Rw2G023390

chorismate mutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0019676
Physical Location & Seq
Reverse (-)
34105216 .. 34108697
3482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G023390.1

Sequence Viewer

Length: 441 bp
ATGTTGTTGGTTTGTTTGTACGTGGATGATTTAATTTTTACAGGCAATAATCCAAGAATGTTTGAAGATTTCATGAAAGCAATGACTAGAGAATTCGAGATGACCGATATTGGGCTCATGTCATACTATCTTGACATTGAAGTGAAGCAAATGGAAGAAGGCATCTTCATTTCACAAGAAGGCTATACCAGAGAAATCCTCCAAAAATTCAAGATGGATAAGTGCAATCCTGCAATCACACCTGTGGAGTATGGAGTGAAGTTATTCAAGCATGATGTTGCTGAGAAGGTGAATCCAATTACTTTCAAGAGTTTGATTGGGAGTTTGAGATATCTAACATGTACTAGACTTGATATTCTTTATGGAGTTAGTCTTGTTAGCTGTTGCATGGAGGAGCTAACTAGCACCCACATGAAGACAGCCACAAGAATTCTTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.9

Weight (kDa)

5.21

Isoelectric Point (pI)

36.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_2 PF07727 2 - 83 4.2e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019676)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40202
rosa_chinensis RchiOBHm_Chr1g0369901 RchiOBHm_Chr2g0121901
rosa_laevigata RLG00000035900
rosa_roxburghii Rroxscaffold_3G00244770 Rroxscaffold_5G00337010
rosa_wichuraiana Rw2G023390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 92, 206, 429
AfaI GTAC 2 cut(s) 20, 343
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 338
AgsI TTSAA 5 cut(s) 65, 140, 211, 268, 307
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 2 cut(s) 381, 397
AluI AGCT 2 cut(s) 381, 397
ApoI RAATTY 3 cut(s) 92, 206, 429
Asp700I GAANNNNTTC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 301
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 422
BccI CCATC 1 cut(s) 208
BfaI CTAG 3 cut(s) 87, 345, 402
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 422
BplI GAGNNNNNCTC 2 cut(s) 183, 215
BsaAI YACGTR 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 87
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 111
Bsp1286I GDGCHC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 274
BspHI TCATGA 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 282, 434
BstF5I GGATG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 31
CciI TCATGA 1 cut(s) 72
Csp6I GTAC 2 cut(s) 19, 342
CviAII CATG 6 cut(s) 73, 118, 272, 339, 388, 412
CviJI RGCY 5 cut(s) 115, 183, 381, 397, 422
CviKI_1 RGCY 5 cut(s) 115, 183, 381, 397, 422
CviQI GTAC 2 cut(s) 19, 342
DdeI CTNAG 2 cut(s) 282, 434
Eco24I GRGCYC 1 cut(s) 117
Eco32I GATATC 1 cut(s) 332
EcoRI GAATTC 2 cut(s) 92, 429
EcoRV GATATC 1 cut(s) 332
EcoT38I GRGCYC 1 cut(s) 117
FaeI CATG 6 cut(s) 76, 121, 275, 342, 391, 415
FatI CATG 6 cut(s) 72, 117, 271, 338, 387, 411
FokI GGATG 1 cut(s) 38
FriOI GRGCYC 1 cut(s) 117
FspBI CTAG 3 cut(s) 87, 345, 402
Hin1II CATG 6 cut(s) 76, 121, 275, 342, 391, 415
HinfI GANTC 1 cut(s) 292
HphI GGTGA 1 cut(s) 301
Hpy188III TCNNGA 5 cut(s) 73, 97, 131, 211, 307
HpyAV CCTTC 3 cut(s) 152, 173, 280
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 3 cut(s) 225, 233, 387
HpyF3I CTNAG 2 cut(s) 282, 434
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 6 cut(s) 76, 121, 275, 342, 391, 415
LmnI GCTCC 1 cut(s) 394
LpnPI CCDG 4 cut(s) 27, 202, 243, 255
LweI GCATC 1 cut(s) 171
MaeI CTAG 3 cut(s) 87, 345, 402
MaeII ACGT 1 cut(s) 21
MboII GAAGA 4 cut(s) 77, 157, 167, 427
MhlI GDGCHC 1 cut(s) 117
MluCI AATT 5 cut(s) 33, 92, 206, 297, 429
MnlI CCTC 2 cut(s) 209, 385
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 32
MslI CAYNNNNRTG 3 cut(s) 140, 242, 410
NlaIII CATG 6 cut(s) 76, 121, 275, 342, 391, 415
NspI RCATGY 1 cut(s) 342
OliI CACNNNNGTG 1 cut(s) 242
PagI TCATGA 1 cut(s) 72
PciI ACATGT 1 cut(s) 338
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 22
PscI ACATGT 1 cut(s) 338
RsaI GTAC 2 cut(s) 20, 343
RsaNI GTAC 2 cut(s) 19, 342
RseI CAYNNNNRTG 3 cut(s) 140, 242, 410
SaqAI TTAA 1 cut(s) 32
SduI GDGCHC 1 cut(s) 117
SetI ASST 5 cut(s) 24, 244, 291, 383, 399
SfaNI GCATC 1 cut(s) 171
SmiMI CAYNNNNRTG 3 cut(s) 140, 242, 410
Sse9I AATT 5 cut(s) 33, 92, 206, 297, 429
SspMI CTAG 3 cut(s) 87, 345, 402
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 96
TaqII GACCGA 1 cut(s) 119
TasI AATT 5 cut(s) 33, 92, 206, 297, 429
TatI WGTACW 1 cut(s) 341
TfiI GAWTC 1 cut(s) 292
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TspDTI ATGAA 4 cut(s) 61, 89, 157, 428
XapI RAATTY 3 cut(s) 92, 206, 429
XceI RCATGY 1 cut(s) 342
XmnI GAANNNNTTC 1 cut(s) 263
XspI CTAG 3 cut(s) 87, 345, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.