FvH4_3g01051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0019206
Physical Location & Seq
Reverse (-)
530560 .. 531449
890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01051.t1

Sequence Viewer

Length: 681 bp
ATGCATTATAATATAGCAAGGGAATTGAGCAACTTACACATGAAGATGATGATTATCAAAATGGGAGCTAATCTAAGCACATTCAAGCGCTCACCATCGGCTCGTTCCTGTTCTTGTAATTCTTCAAGTACAGGAGCCTCTCTCATGGAGTTGCTGAAACCAGGGTGCCTAAGATCCGAGAAGGGTGTTAGGAAGAGACCCTTGACCCCAGAGAAGAAGAAGACGACGAATGTTTATAGTACTAGTAGTACTAAAAAAGAAAATATTTCAGGCGAGGGCAGCTTTACTAGCCTAGGAGATTGGCTCACGTCCTCTCCGGGTTCAAAGCCAGATAGCATGAATGGAGGTGAATTGTATGTGTTGAGATCTCACTACTCATCTAGAAGGGTGCACCCTTCTTCTTCATCATCATCAAAACGACCTCATAGTATTCATGATGATGAAGCTTTAAGTTCTAAAGCAAGAGACAGTTTCCCCATAAACAGAAGTGCTGTGAAAAATGAGGATGACAACATTTATCCAGACGCAAACTTGGATAACGTGAGTTCATCGCTAAGAAGAAACCAAAGTGGCAATAAGTCGAAGAAAAGGGTAAGCTTTAGGTTGCCCGAGGAAGCTGATATTGTTATATTTTACCCTTCAGAGGAGATGTTCATCGATTGTGAAGAAAACTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.18

Weight (kDa)

9.33

Isoelectric Point (pI)

83.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01051
prunus_persica Prupe.4G011600_v2.0.a1
rosa_laevigata RLG00000030946
rosa_roxburghii Rroxscaffold_1G00074720
rosa_samantha Rh5AG012700 Rh5BG015600 Rh5CG013700 Rh5DG013500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 165
AclWI GGATC 1 cut(s) 168
AcuI CTGAAG 1 cut(s) 624
AfaI GTAC 3 cut(s) 130, 241, 250
AfeI AGCGCT 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 643
AgsI TTSAA 3 cut(s) 85, 126, 324
AhlI ACTAGT 1 cut(s) 242
AjiI CACGTC 1 cut(s) 309
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 5 cut(s) 68, 282, 446, 597, 617
AluI AGCT 5 cut(s) 68, 282, 446, 597, 617
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 2 cut(s) 190, 459
Alw44I GTGCAC 1 cut(s) 389
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 608
Aor51HI AGCGCT 1 cut(s) 89
ApaLI GTGCAC 1 cut(s) 389
ApeKI GCWGC 1 cut(s) 279
AspA2I CCTAGG 1 cut(s) 292
AspLEI GCGC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 318
AsuHPI GGTGA 2 cut(s) 84, 359
AvaI CYCGRG 1 cut(s) 608
AvrII CCTAGG 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 393
BanI GGYRCC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 162
BcnI CCSGG 1 cut(s) 318
BcoDI GTCTC 2 cut(s) 190, 459
BcuI ACTAGT 1 cut(s) 242
BfaI CTAG 4 cut(s) 243, 288, 293, 381
BfoI RGCGCY 1 cut(s) 91
BglII AGATCT 1 cut(s) 365
BisI GCNGC 1 cut(s) 280
BlnI CCTAGG 1 cut(s) 292
BlsI GCNGC 1 cut(s) 281
BmcAI AGTACT 2 cut(s) 241, 250
Bme1390I CCNGG 2 cut(s) 162, 318
BmeT110I CYCGRG 1 cut(s) 608
BmgBI CACGTC 1 cut(s) 309
BmiI GGNNCC 2 cut(s) 136, 167
BmrFI CCNGG 2 cut(s) 162, 318
BpiI GAAGAC 1 cut(s) 227
BplI GAGNNNNNCTC 4 cut(s) 126, 158, 288, 320
BpuMI CCSGG 1 cut(s) 318
Bsa29I ATCGAT 1 cut(s) 657
BsaBI GATNNNNATC 2 cut(s) 53, 653
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 161, 292, 609
BsaXI ACNNNNNCTCC 2 cut(s) 298, 328
Bsc4I CCNNNNNNNGG 1 cut(s) 643
Bse8I GATNNNNATC 2 cut(s) 53, 653
BseBI CCWGG 1 cut(s) 162
BseCI ATCGAT 1 cut(s) 657
BseDI CCNNGG 3 cut(s) 161, 292, 609
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 2 cut(s) 53, 653
BseLI CCNNNNNNNGG 1 cut(s) 643
BseRI GAGGAG 1 cut(s) 659
BseSI GKGCMC 1 cut(s) 393
BseXI GCAGC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 165
BshVI ATCGAT 1 cut(s) 657
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 608
BsiSI CCGG 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 643
BsmAI GTCTC 2 cut(s) 190, 459
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 1 cut(s) 608
Bsp1286I GDGCHC 1 cut(s) 393
Bsp143I GATC 2 cut(s) 173, 365
BspDI ATCGAT 1 cut(s) 657
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 2 cut(s) 136, 167
BspPI GGATC 1 cut(s) 168
BspT107I GGYRCC 1 cut(s) 165
BspTNI GGTCTC 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 161, 292, 609
BssMI GATC 2 cut(s) 173, 365
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 470
Bst6I CTCTTC 1 cut(s) 188
BstDEI CTNAG 3 cut(s) 74, 170, 554
BstF5I GGATG 1 cut(s) 511
BstH2I RGCGCY 1 cut(s) 91
BstHHI GCGC 1 cut(s) 90
BstKTI GATC 2 cut(s) 176, 368
BstMAI GTCTC 2 cut(s) 190, 459
BstMBI GATC 2 cut(s) 173, 365
BstMWI GCNNNNNNNGC 2 cut(s) 279, 288
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 2 cut(s) 160, 316
BstSLI GKGCMC 1 cut(s) 393
BstV1I GCAGC 1 cut(s) 291
BstV2I GAAGAC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 173, 365
BstYI RGATCY 2 cut(s) 173, 365
Bsu15I ATCGAT 1 cut(s) 657
BsuTUI ATCGAT 1 cut(s) 657
BtgZI GCGATG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 309
BtsCI GGATG 1 cut(s) 511
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 90
ClaI ATCGAT 1 cut(s) 657
CseI GACGC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 129, 240, 249
CviAII CATG 4 cut(s) 40, 145, 337, 434
CviQI GTAC 3 cut(s) 129, 240, 249
DdeI CTNAG 3 cut(s) 74, 170, 554
DpnI GATC 2 cut(s) 175, 367
DpnII GATC 2 cut(s) 173, 365
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 1 cut(s) 292
Eco31I GGTCTC 1 cut(s) 190
Eco47III AGCGCT 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 624
Eco88I CYCGRG 1 cut(s) 608
EcoRII CCWGG 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 4 cut(s) 43, 148, 340, 437
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 4 cut(s) 39, 144, 336, 433
Fnu4HI GCNGC 1 cut(s) 280
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 4 cut(s) 243, 288, 293, 381
GlaI GCGC 1 cut(s) 89
GluI GCNGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 91
HapII CCGG 1 cut(s) 317
HgaI GACGC 1 cut(s) 533
HhaI GCGC 1 cut(s) 90
Hin1II CATG 4 cut(s) 43, 148, 340, 437
Hin6I GCGC 1 cut(s) 88
HinP1I GCGC 1 cut(s) 88
HindIII AAGCTT 2 cut(s) 444, 595
HpaII CCGG 1 cut(s) 317
HphI GGTGA 2 cut(s) 84, 359
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 2 cut(s) 178, 643
Hpy188III TCNNGA 3 cut(s) 381, 434, 521
Hpy8I GTNNAC 1 cut(s) 391
Hpy99I CGWCG 1 cut(s) 229
HpyAV CCTTC 4 cut(s) 175, 378, 405, 648
HpyCH4III ACNGT 1 cut(s) 470
HpyCH4IV ACGT 2 cut(s) 308, 540
HpyCH4V TGCA 2 cut(s) 4, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 279, 288
HpyF3I CTNAG 3 cut(s) 74, 170, 554
HpySE526I ACGT 2 cut(s) 308, 540
Hsp92II CATG 4 cut(s) 43, 148, 340, 437
HspAI GCGC 1 cut(s) 88
Kzo9I GATC 2 cut(s) 173, 365
LmnI GCTCC 2 cut(s) 65, 134
LpnPI CCDG 9 cut(s) 117, 121, 147, 174, 222, 255, 330, 342, 534
Lsp1109I GCAGC 1 cut(s) 291
MaeI CTAG 4 cut(s) 243, 288, 293, 381
MaeII ACGT 2 cut(s) 308, 540
MalI GATC 2 cut(s) 175, 367
MboI GATC 2 cut(s) 173, 365
MflI RGATCY 2 cut(s) 173, 365
MhlI GDGCHC 1 cut(s) 393
MluCI AATT 3 cut(s) 23, 118, 350
MnlI CCTC 8 cut(s) 148, 268, 322, 338, 432, 496, 604, 637
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 449
MslI CAYNNNNRTG 2 cut(s) 44, 438
MspI CCGG 1 cut(s) 317
MspR9I CCNGG 2 cut(s) 162, 318
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 279, 288
NciI CCSGG 1 cut(s) 318
NdeII GATC 2 cut(s) 173, 365
NlaIII CATG 4 cut(s) 43, 148, 340, 437
NlaIV GGNNCC 2 cut(s) 136, 167
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 433
PkrI GCNGC 1 cut(s) 281
PsiI TTATAA 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 2 cut(s) 136, 167
PsuI RGATCY 2 cut(s) 173, 365
RsaI GTAC 3 cut(s) 130, 241, 250
RsaNI GTAC 3 cut(s) 129, 240, 249
RseI CAYNNNNRTG 2 cut(s) 44, 438
SaqAI TTAA 1 cut(s) 449
SatI GCNGC 1 cut(s) 280
Sau3AI GATC 2 cut(s) 173, 365
ScaI AGTACT 2 cut(s) 241, 250
ScrFI CCNGG 2 cut(s) 162, 318
SduI GDGCHC 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 44, 438
SpeI ACTAGT 1 cut(s) 242
Sse9I AATT 3 cut(s) 23, 118, 350
SspI AATATT 1 cut(s) 265
SspMI CTAG 4 cut(s) 243, 288, 293, 381
StyD4I CCNGG 2 cut(s) 160, 316
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 1 cut(s) 470
TaiI ACGT 2 cut(s) 311, 543
TaqI TCGA 2 cut(s) 581, 657
TasI AATT 3 cut(s) 23, 118, 350
TatI WGTACW 3 cut(s) 128, 239, 248
Tru1I TTAA 1 cut(s) 449
Tru9I TTAA 1 cut(s) 449
TseI GCWGC 1 cut(s) 279
TspDTI ATGAA 7 cut(s) 56, 353, 393, 422, 456, 537, 643
VneI GTGCAC 1 cut(s) 389
XbaI TCTAGA 1 cut(s) 380
XmaJI CCTAGG 1 cut(s) 292
XspI CTAG 4 cut(s) 243, 288, 293, 381
ZrmI AGTACT 2 cut(s) 241, 250
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.