Rh5AG012700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0019206
Physical Location & Seq
Reverse (-)
838241 .. 839547
1307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG012700.1

Sequence Viewer

Length: 621 bp
ATGGATACGCTTAGGAAGATAATCAAAAGGGGTGCTACGTTAAGCACATTGAAGCGCTCGTCTTCTGCGCGATGCTGTAGTACAAGTACAGGAGCGTCCCTCATGGAGTTGCTGAGACCGGGGTGCTTAAGATCGGAGAAGAGCGTAAGGAAAAGACCCTTGACGCCGGAGATGAAGAAGAGGAATGTTAGTAGTACAAATAGTACTATAACTACAAATATTTCAGGGGAGAGCAGCTTTACCAGCCTAGGAGAATGGCTCTCATCCTCTCCAGGATCGAAGCCAGATAGCATGAATGGAGGTGAATTGTATGTGTTGAGATCACACCACTCATCTAGAAGGGTGCACCCTTCTTCTTCTTCTTCATTAAAACGGCCTCGTGATCATGCAGCTCTAGGTTCTAAAGCAAGAGACAGTTTCTCCATAGACAGAACTGTGAAAAATGAGGGTGACAAGAATCCAGGTGCAAACTTGGACAACACGAGTTCATCGCTTAGCAGAAACCAAAGTGGGAATAAGTCGAAGAAAAGGGTGAGCTTTAGGTTGCCTGAGGAAGCTGATATTATTATATTTTACCCTTCAGAGGAGATGTTCATCGATTGTGAACAAAACTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.68

Weight (kDa)

9.97

Isoelectric Point (pI)

62.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01051
prunus_persica Prupe.4G011600_v2.0.a1
rosa_laevigata RLG00000030946
rosa_roxburghii Rroxscaffold_1G00074720
rosa_samantha Rh5AG012700 Rh5BG015600 Rh5CG013700 Rh5DG013500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AclWI GGATC 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 564
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 4 cut(s) 82, 88, 196, 205
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 583
AflII CTTAAG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 2 cut(s) 271, 460
AluBI AGCT 4 cut(s) 237, 392, 537, 557
AluI AGCT 4 cut(s) 237, 392, 537, 557
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 109, 405
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 1 cut(s) 283
Aor51HI AGCGCT 1 cut(s) 56
AoxI GGCC 1 cut(s) 374
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 234, 389
AspA2I CCTAGG 1 cut(s) 247
AspLEI GCGC 2 cut(s) 57, 70
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 314, 461, 544
AvrII CCTAGG 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 348
BauI CACGAG 2 cut(s) 378, 481
BbsI GAAGAC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 246, 401
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 2 cut(s) 273, 462
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 2 cut(s) 109, 405
BfaI CTAG 3 cut(s) 248, 336, 395
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 58
BfrI CTTAAG 1 cut(s) 127
BisI GCNGC 2 cut(s) 235, 390
BlnI CCTAGG 1 cut(s) 247
BlpI GCTNAGC 1 cut(s) 494
BlsI GCNGC 2 cut(s) 236, 391
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 120, 273, 462
BmrFI CCNGG 3 cut(s) 120, 273, 462
BmsI GCATC 1 cut(s) 62
BpiI GAAGAC 1 cut(s) 54
BplI GAGNNNNNCTC 4 cut(s) 84, 116, 243, 275
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 494
BpuMI CCSGG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 597
BsaBI GATNNNNATC 1 cut(s) 593
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 119, 247
BsaXI ACNNNNNCTCC 2 cut(s) 404, 434
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse21I CCTNAGG 1 cut(s) 549
Bse8I GATNNNNATC 1 cut(s) 593
BseBI CCWGG 2 cut(s) 273, 462
BseCI ATCGAT 1 cut(s) 597
BseDI CCNNGG 2 cut(s) 119, 247
BseGI GGATG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 593
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 104, 540
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 2 cut(s) 246, 401
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 376
BshVI ATCGAT 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 119, 167
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 2 cut(s) 109, 405
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 4 cut(s) 131, 275, 320, 382
Bsp1720I GCTNAGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 376
BspCNI CTCAG 2 cut(s) 105, 541
BspDI ATCGAT 1 cut(s) 597
BspFNI CGCG 1 cut(s) 70
BspPI GGATC 1 cut(s) 283
BspQI GCTCTTC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 109
BssECI CCNNGG 2 cut(s) 119, 247
BssMI GATC 4 cut(s) 131, 275, 320, 382
BssNI GRCGYC 1 cut(s) 164
BssSI CACGAG 2 cut(s) 378, 481
BssT1I CCWWGG 1 cut(s) 247
Bst2BI CACGAG 2 cut(s) 378, 481
Bst2UI CCWGG 2 cut(s) 273, 462
Bst4CI ACNGT 2 cut(s) 416, 436
Bst6I CTCTTC 2 cut(s) 134, 173
BstACI GRCGYC 1 cut(s) 164
BstAFI CTTAAG 1 cut(s) 127
BstDEI CTNAG 4 cut(s) 11, 113, 494, 549
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 2 cut(s) 57, 70
BstKTI GATC 4 cut(s) 134, 278, 323, 385
BstMAI GTCTC 2 cut(s) 109, 405
BstMBI GATC 4 cut(s) 131, 275, 320, 382
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 2 cut(s) 273, 462
BstSCI CCNGG 3 cut(s) 118, 271, 460
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 246, 401
BstV2I GAAGAC 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 597
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 1 cut(s) 376
BsuTUI ATCGAT 1 cut(s) 597
BtgZI GCGATG 2 cut(s) 85, 474
BtsCI GGATG 1 cut(s) 263
CfoI GCGC 2 cut(s) 57, 70
ClaI ATCGAT 1 cut(s) 597
CseI GACGC 2 cut(s) 84, 172
Csp6I GTAC 4 cut(s) 81, 87, 195, 204
CviAII CATG 3 cut(s) 103, 292, 386
CviJI RGCY 8 cut(s) 237, 246, 259, 283, 376, 392, 537, 557
CviKI_1 RGCY 8 cut(s) 237, 246, 259, 283, 376, 392, 537, 557
CviQI GTAC 4 cut(s) 81, 87, 195, 204
DdeI CTNAG 4 cut(s) 11, 113, 494, 549
DpnI GATC 4 cut(s) 133, 277, 322, 384
DpnII GATC 4 cut(s) 131, 275, 320, 382
Eam1104I CTCTTC 2 cut(s) 134, 173
EarI CTCTTC 2 cut(s) 134, 173
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 564
Eco81I CCTNAGG 1 cut(s) 549
EcoRII CCWGG 2 cut(s) 271, 460
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 3 cut(s) 106, 295, 389
FaiI YATR 7 cut(s) 104, 209, 293, 312, 387, 425, 569
FaqI GGGAC 1 cut(s) 82
FatI CATG 3 cut(s) 102, 291, 385
FbaI TGATCA 1 cut(s) 382
Fnu4HI GCNGC 2 cut(s) 235, 390
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 235, 390
FspBI CTAG 3 cut(s) 248, 336, 395
GlaI GCGC 2 cut(s) 56, 69
GluI GCNGC 2 cut(s) 235, 390
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 1 cut(s) 376
HapII CCGG 2 cut(s) 119, 167
HgaI GACGC 2 cut(s) 84, 172
HhaI GCGC 2 cut(s) 57, 70
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 3 cut(s) 106, 295, 389
Hin6I GCGC 2 cut(s) 55, 68
HinP1I GCGC 2 cut(s) 55, 68
HinfI GANTC 1 cut(s) 457
HpaII CCGG 2 cut(s) 119, 167
HphI GGTGA 3 cut(s) 314, 461, 544
Hpy166II GTNNAC 2 cut(s) 346, 605
Hpy188I TCNGA 2 cut(s) 136, 583
Hpy188III TCNNGA 2 cut(s) 336, 380
Hpy8I GTNNAC 2 cut(s) 346, 605
HpyAV CCTTC 3 cut(s) 333, 360, 588
HpyCH4III ACNGT 2 cut(s) 416, 436
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 346, 389, 467
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 4 cut(s) 11, 113, 494, 549
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 3 cut(s) 106, 295, 389
HspAI GCGC 2 cut(s) 55, 68
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 4 cut(s) 131, 275, 320, 382
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 2 cut(s) 246, 401
LweI GCATC 1 cut(s) 62
MaeI CTAG 3 cut(s) 248, 336, 395
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 449
MalI GATC 4 cut(s) 133, 277, 322, 384
MboI GATC 4 cut(s) 131, 275, 320, 382
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 305
MnlI CCTC 8 cut(s) 110, 174, 277, 293, 387, 439, 544, 577
MseI TTAA 3 cut(s) 41, 128, 368
MspCI CTTAAG 1 cut(s) 127
MspI CCGG 2 cut(s) 119, 167
MspR9I CCNGG 3 cut(s) 120, 273, 462
MvaI CCWGG 2 cut(s) 273, 462
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 243
NciI CCSGG 1 cut(s) 120
NdeII GATC 4 cut(s) 131, 275, 320, 382
NlaIII CATG 3 cut(s) 106, 295, 389
NmuCI GTSAC 1 cut(s) 449
PciSI GCTCTTC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 457
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 2 cut(s) 236, 391
Psp6I CCWGG 2 cut(s) 271, 460
PspGI CCWGG 2 cut(s) 271, 460
RsaI GTAC 4 cut(s) 82, 88, 196, 205
RsaNI GTAC 4 cut(s) 81, 87, 195, 204
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 41, 128, 368
SatI GCNGC 2 cut(s) 235, 390
Sau3AI GATC 4 cut(s) 131, 275, 320, 382
ScaI AGTACT 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 120, 273, 462
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 41, 239, 304, 394, 400, 466, 539, 545, 559
SfaNI GCATC 1 cut(s) 62
SfcI CTRYAG 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 305
SspI AATATT 1 cut(s) 220
SspMI CTAG 3 cut(s) 248, 336, 395
StyD4I CCNGG 3 cut(s) 118, 271, 460
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 416, 436
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 278, 521, 597
TasI AATT 1 cut(s) 305
TatI WGTACW 4 cut(s) 80, 86, 194, 203
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 41, 128, 368
Tru9I TTAA 3 cut(s) 41, 128, 368
TseFI GTSAC 1 cut(s) 449
TseI GCWGC 2 cut(s) 234, 389
Tsp45I GTSAC 1 cut(s) 449
TspDTI ATGAA 5 cut(s) 188, 308, 354, 477, 583
Vha464I CTTAAG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 247
XspI CTAG 3 cut(s) 248, 336, 395
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.