RLG00000030946

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0019206
Physical Location & Seq
Reverse (-)
834769 .. 835386
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030946

Sequence Viewer

Length: 618 bp
ATGGATTCGCTTAGGAAGATAATCAAAAGGGGTGCTACGTTAAGCACATTGAAGCGCTCCTCTTCTGCGCGATCCTGTAGTACAAGTATAGGAGCGTCCCTCATGGGGTTGCTGAAACCGGGGTGCTTAAGATCCGAGAAGAGCGTAAGGAAGAGACCCTTGACGCCGGAGATGAAGAAGAGGAATGTTAGTAGTATAAGTAGTACTACAAATAAAAATATTTCAGGAGAGAGCAGCTTTACGAGCCTAGGAGAATGGCTCTCATCCTCTCCAGGATCGAAGCCAGATAGCATGAATGGAGGTGAATTGTATGTGTTGAGATCACACCACTCATCTAGAAGGGTGCACCCTTCTTCTTCTTCATTAAAACGGCCTCATGATCATGCAGCTCTAGGTTCTAAAGCAAGCGACAGTTTCTCCATAAACAGAACTGTGAAAAATGAGGGTGACAAGAATCCAGGTGCAAACTTGGACAACACGAGTTCATCGCTTAGCAGAAACCAAAGTGGGAATAAGTCGAAGAAAAGGGTGAGCTTTAGGTTGCCTGAGGAAGCTGATATTATTATATTTTACCCTTCAGAGGAGATGTTCATCGATTGTGAACAAAACTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

206

Amino Acids

22.39

Weight (kDa)

10.05

Isoelectric Point (pI)

68.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019206)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g01051
prunus_persica Prupe.4G011600_v2.0.a1
rosa_laevigata RLG00000030946
rosa_roxburghii Rroxscaffold_1G00074720
rosa_samantha Rh5AG012700 Rh5BG015600 Rh5CG013700 Rh5DG013500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 70
AclWI GGATC 3 cut(s) 66, 126, 283
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 164
AfaI GTAC 2 cut(s) 82, 205
AfeI AGCGCT 1 cut(s) 56
AfiI CCNNNNNNNGG 2 cut(s) 105, 580
AflII CTTAAG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 2 cut(s) 271, 457
AluBI AGCT 4 cut(s) 237, 389, 534, 554
AluI AGCT 4 cut(s) 237, 389, 534, 554
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 1 cut(s) 148
Alw44I GTGCAC 1 cut(s) 344
AlwI GGATC 3 cut(s) 66, 126, 283
Aor51HI AGCGCT 1 cut(s) 56
AoxI GGCC 1 cut(s) 371
ApaLI GTGCAC 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 234, 386
AspA2I CCTAGG 1 cut(s) 247
AspLEI GCGC 2 cut(s) 57, 70
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 314, 458, 541
AvrII CCTAGG 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 546
BaeGI GKGCMC 1 cut(s) 348
BauI CACGAG 1 cut(s) 478
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 2 cut(s) 246, 398
BceAI ACGGC 1 cut(s) 386
BciT130I CCWGG 2 cut(s) 273, 459
BclI TGATCA 1 cut(s) 379
BcnI CCSGG 1 cut(s) 120
BcoDI GTCTC 1 cut(s) 148
BfaI CTAG 3 cut(s) 248, 336, 392
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 1 cut(s) 58
BfrI CTTAAG 1 cut(s) 127
BisI GCNGC 2 cut(s) 235, 387
BlnI CCTAGG 1 cut(s) 247
BlpI GCTNAGC 1 cut(s) 491
BlsI GCNGC 2 cut(s) 236, 388
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 3 cut(s) 120, 273, 459
BmrFI CCNGG 3 cut(s) 120, 273, 459
BplI GAGNNNNNCTC 4 cut(s) 84, 116, 243, 275
BpmI CTGGAG 1 cut(s) 255
Bpu10I CCTNAGC 1 cut(s) 11
Bpu1102I GCTNAGC 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 594
BsaBI GATNNNNATC 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 164
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 119, 247
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 105, 580
Bse21I CCTNAGG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 590
BseBI CCWGG 2 cut(s) 273, 459
BseCI ATCGAT 1 cut(s) 594
BseDI CCNNGG 2 cut(s) 119, 247
BseGI GGATG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 590
BseLI CCNNNNNNNGG 2 cut(s) 105, 580
BseMII CTCAG 1 cut(s) 537
BseRI GAGGAG 2 cut(s) 49, 596
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 2 cut(s) 246, 398
Bsh1236I CGCG 1 cut(s) 70
BshFI GGCC 1 cut(s) 373
BshVI ATCGAT 1 cut(s) 594
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 2 cut(s) 119, 167
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 2 cut(s) 105, 580
BsmAI GTCTC 1 cut(s) 148
BsmFI GGGAC 1 cut(s) 82
BsnI GGCC 1 cut(s) 373
Bso31I GGTCTC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 5 cut(s) 71, 131, 275, 320, 379
Bsp1720I GCTNAGC 1 cut(s) 491
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 538
BspDI ATCGAT 1 cut(s) 594
BspFNI CGCG 1 cut(s) 70
BspHI TCATGA 1 cut(s) 376
BspPI GGATC 3 cut(s) 66, 126, 283
BspQI GCTCTTC 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 119, 247
BssMI GATC 5 cut(s) 71, 131, 275, 320, 379
BssNI GRCGYC 1 cut(s) 164
BssSI CACGAG 1 cut(s) 478
BssT1I CCWWGG 1 cut(s) 247
Bst2BI CACGAG 1 cut(s) 478
Bst2UI CCWGG 2 cut(s) 273, 459
Bst4CI ACNGT 2 cut(s) 413, 433
Bst6I CTCTTC 4 cut(s) 67, 134, 146, 173
BstACI GRCGYC 1 cut(s) 164
BstAFI CTTAAG 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 406
BstDEI CTNAG 3 cut(s) 11, 491, 546
BstF5I GGATG 1 cut(s) 263
BstFNI CGCG 1 cut(s) 70
BstH2I RGCGCY 1 cut(s) 58
BstHHI GCGC 2 cut(s) 57, 70
BstKTI GATC 5 cut(s) 74, 134, 278, 323, 382
BstMAI GTCTC 1 cut(s) 148
BstMBI GATC 5 cut(s) 71, 131, 275, 320, 379
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstNI CCWGG 2 cut(s) 273, 459
BstSCI CCNGG 3 cut(s) 118, 271, 457
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 348
BstUI CGCG 1 cut(s) 70
BstV1I GCAGC 2 cut(s) 246, 398
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
Bsu15I ATCGAT 1 cut(s) 594
Bsu36I CCTNAGG 1 cut(s) 546
BsuRI GGCC 1 cut(s) 373
BsuTUI ATCGAT 1 cut(s) 594
BtgZI GCGATG 1 cut(s) 471
BtsCI GGATG 1 cut(s) 263
Cac8I GCNNGC 1 cut(s) 406
CciI TCATGA 1 cut(s) 376
CfoI GCGC 2 cut(s) 57, 70
ClaI ATCGAT 1 cut(s) 594
CseI GACGC 2 cut(s) 84, 172
Csp6I GTAC 2 cut(s) 81, 204
CviAII CATG 4 cut(s) 103, 292, 377, 383
CviJI RGCY 8 cut(s) 237, 246, 259, 283, 373, 389, 534, 554
CviKI_1 RGCY 8 cut(s) 237, 246, 259, 283, 373, 389, 534, 554
CviQI GTAC 2 cut(s) 81, 204
DdeI CTNAG 3 cut(s) 11, 491, 546
DpnI GATC 5 cut(s) 73, 133, 277, 322, 381
DpnII GATC 5 cut(s) 71, 131, 275, 320, 379
Eam1104I CTCTTC 4 cut(s) 67, 134, 146, 173
EarI CTCTTC 4 cut(s) 67, 134, 146, 173
Eco130I CCWWGG 1 cut(s) 247
Eco31I GGTCTC 1 cut(s) 148
Eco47III AGCGCT 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 561
Eco81I CCTNAGG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 271, 457
EcoT14I CCWWGG 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 247
FaeI CATG 4 cut(s) 106, 295, 380, 386
FaiI YATR 9 cut(s) 89, 104, 197, 293, 312, 378, 384, 422, 566
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 1 cut(s) 82
FatI CATG 4 cut(s) 102, 291, 376, 382
FbaI TGATCA 1 cut(s) 379
Fnu4HI GCNGC 2 cut(s) 235, 387
FokI GGATG 1 cut(s) 250
Fsp4HI GCNGC 2 cut(s) 235, 387
FspBI CTAG 3 cut(s) 248, 336, 392
GlaI GCGC 2 cut(s) 56, 69
GluI GCNGC 2 cut(s) 235, 387
GsuI CTGGAG 1 cut(s) 255
HaeII RGCGCY 1 cut(s) 58
HaeIII GGCC 1 cut(s) 373
HapII CCGG 2 cut(s) 119, 167
HgaI GACGC 2 cut(s) 84, 172
HhaI GCGC 2 cut(s) 57, 70
Hin1I GRCGYC 1 cut(s) 164
Hin1II CATG 4 cut(s) 106, 295, 380, 386
Hin6I GCGC 2 cut(s) 55, 68
HinP1I GCGC 2 cut(s) 55, 68
HinfI GANTC 2 cut(s) 5, 454
HpaII CCGG 2 cut(s) 119, 167
HphI GGTGA 3 cut(s) 314, 458, 541
Hpy166II GTNNAC 2 cut(s) 346, 602
Hpy188I TCNGA 2 cut(s) 136, 580
Hpy188III TCNNGA 3 cut(s) 225, 336, 377
Hpy8I GTNNAC 2 cut(s) 346, 602
HpyAV CCTTC 3 cut(s) 333, 360, 585
HpyCH4III ACNGT 2 cut(s) 413, 433
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 3 cut(s) 346, 386, 464
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 3 cut(s) 11, 491, 546
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 164
Hsp92II CATG 4 cut(s) 106, 295, 380, 386
HspAI GCGC 2 cut(s) 55, 68
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 5 cut(s) 71, 131, 275, 320, 379
LguI GCTCTTC 1 cut(s) 134
LmnI GCTCC 2 cut(s) 62, 92
Lsp1109I GCAGC 2 cut(s) 246, 398
MaeI CTAG 3 cut(s) 248, 336, 392
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 446
MalI GATC 5 cut(s) 73, 133, 277, 322, 381
MboI GATC 5 cut(s) 71, 131, 275, 320, 379
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 1 cut(s) 305
MnlI CCTC 9 cut(s) 70, 110, 174, 277, 293, 384, 436, 541, 574
MseI TTAA 3 cut(s) 41, 128, 365
MslI CAYNNNNRTG 1 cut(s) 381
MspCI CTTAAG 1 cut(s) 127
MspI CCGG 2 cut(s) 119, 167
MspR9I CCNGG 3 cut(s) 120, 273, 459
MvaI CCWGG 2 cut(s) 273, 459
MvnI CGCG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 243
NciI CCSGG 1 cut(s) 120
NdeII GATC 5 cut(s) 71, 131, 275, 320, 379
NlaIII CATG 4 cut(s) 106, 295, 380, 386
NmuCI GTSAC 1 cut(s) 446
PagI TCATGA 1 cut(s) 376
PciSI GCTCTTC 1 cut(s) 134
PfeI GAWTC 2 cut(s) 5, 454
PfoI TCCNGGA 1 cut(s) 271
PkrI GCNGC 2 cut(s) 236, 388
Psp6I CCWGG 2 cut(s) 271, 457
PspGI CCWGG 2 cut(s) 271, 457
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 82, 205
RsaNI GTAC 2 cut(s) 81, 204
RseI CAYNNNNRTG 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 134
SaqAI TTAA 3 cut(s) 41, 128, 365
SatI GCNGC 2 cut(s) 235, 387
Sau3AI GATC 5 cut(s) 71, 131, 275, 320, 379
ScaI AGTACT 1 cut(s) 205
ScrFI CCNGG 3 cut(s) 120, 273, 459
SduI GDGCHC 1 cut(s) 348
SetI ASST 9 cut(s) 41, 239, 304, 391, 397, 463, 536, 542, 556
SfcI CTRYAG 1 cut(s) 76
SmiMI CAYNNNNRTG 1 cut(s) 381
SmlI CTYRAG 1 cut(s) 127
SmoI CTYRAG 1 cut(s) 127
Sse9I AATT 1 cut(s) 305
SspI AATATT 1 cut(s) 220
SspMI CTAG 3 cut(s) 248, 336, 392
StyD4I CCNGG 3 cut(s) 118, 271, 457
StyI CCWWGG 1 cut(s) 247
TaaI ACNGT 2 cut(s) 413, 433
TaiI ACGT 1 cut(s) 41
TaqI TCGA 3 cut(s) 278, 518, 594
TasI AATT 1 cut(s) 305
TatI WGTACW 2 cut(s) 80, 203
TfiI GAWTC 2 cut(s) 5, 454
Tru1I TTAA 3 cut(s) 41, 128, 365
Tru9I TTAA 3 cut(s) 41, 128, 365
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 234, 386
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 5 cut(s) 188, 308, 351, 474, 580
Vha464I CTTAAG 1 cut(s) 127
VneI GTGCAC 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 335
XmaJI CCTAGG 1 cut(s) 247
XspI CTAG 3 cut(s) 248, 336, 392
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.