FvH4_3g03840

Uridine 5-monophosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0021033
Physical Location & Seq
Forward (+)
2148137 .. 2148516
380 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03840.t1

Sequence Viewer

Length: 345 bp
ATGCTCATGCGCCAAAAGGAGGTCAAGGACTACGGCACCGCCAAGGCCATCGAGGGCACCTTCACCCCCGGCCAGGTCTGCCTCATCATCGAGGACCTCGTCACCAACGGCGCCTCCGTTATTGAAACCGTCGCGCCGCTCCGTGCCGCCGGGTTAAAGTCGCGCCGCCTCCTAGAGGATGCGATTGTCCTCAACCCGTATGATCCGTCCATATCCGAGCTAGAGCTCGGCGTCCTGGACGACGCCGATCGGAGGACGATGGCGAAGACAATGACCATGGAGGACGATTGCGGGGATGGTGATGACGATGGCGAGCTTGGTGCCAAGGCGGAGGCGGCGGGTTAG

Protein Analysis

115

Amino Acids

12.16

Weight (kDa)

4.28

Isoelectric Point (pI)

39.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03840
rosa_chinensis RchiOBHm_Chr4g0435201 RchiOBHm_Chr5g0023651
rosa_roxburghii Rroxscaffold_5G00380830
rosa_samantha Rh4CG013100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 35, 56, 110, 320
AccBSI CCGCTC 1 cut(s) 139
AccII CGCG 2 cut(s) 134, 163
AciI CCGC 8 cut(s) 39, 137, 147, 166, 291, 329, 335, 338
AclWI GGATC 1 cut(s) 197
AcoI YGGCCR 1 cut(s) 70
AcyI GRCGYC 3 cut(s) 111, 231, 243
AfiI CCNNNNNNNGG 4 cut(s) 19, 73, 175, 252
AgsI TTSAA 1 cut(s) 125
AjnI CCWGG 2 cut(s) 72, 234
AluBI AGCT 3 cut(s) 220, 226, 316
AluI AGCT 3 cut(s) 220, 226, 316
Alw21I GWGCWC 1 cut(s) 228
AlwI GGATC 1 cut(s) 197
AoxI GGCC 2 cut(s) 45, 70
AspLEI GCGC 4 cut(s) 12, 113, 136, 165
AspS9I GGNCC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 69, 151
AsuHPI GGTGA 3 cut(s) 55, 94, 311
AvaII GGWCC 1 cut(s) 94
BaeGI GKGCMC 1 cut(s) 59
BanI GGYRCC 4 cut(s) 35, 56, 110, 320
BanII GRGCYC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 228
BccI CCATC 4 cut(s) 56, 253, 290, 302
BceAI ACGGC 2 cut(s) 49, 124
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BciT130I CCWGG 2 cut(s) 74, 236
BcnI CCSGG 2 cut(s) 69, 151
BfaI CTAG 2 cut(s) 173, 221
BfoI RGCGCY 1 cut(s) 114
BisI GCNGC 4 cut(s) 137, 147, 166, 336
BlsI GCNGC 4 cut(s) 138, 148, 167, 337
Bme1390I CCNGG 4 cut(s) 69, 74, 151, 236
Bme18I GGWCC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 4 cut(s) 37, 58, 112, 322
BmrFI CCNGG 4 cut(s) 69, 74, 151, 236
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 272
BpuMI CCSGG 2 cut(s) 69, 151
BsaHI GRCGYC 3 cut(s) 111, 231, 243
BsaJI CCNNGG 4 cut(s) 42, 67, 276, 324
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 4 cut(s) 19, 73, 175, 252
BseBI CCWGG 2 cut(s) 74, 236
BseDI CCNNGG 4 cut(s) 42, 67, 276, 324
BseGI GGATG 2 cut(s) 184, 301
BseLI CCNNNNNNNGG 4 cut(s) 19, 73, 175, 252
BseSI GKGCMC 1 cut(s) 59
Bsh1236I CGCG 2 cut(s) 134, 163
Bsh1285I CGRYCG 1 cut(s) 250
BshFI GGCC 2 cut(s) 47, 72
BshNI GGYRCC 4 cut(s) 35, 56, 110, 320
BsiEI CGRYCG 1 cut(s) 250
BsiHKAI GWGCWC 1 cut(s) 228
BsiSI CCGG 2 cut(s) 69, 150
BslI CCNNNNNNNGG 4 cut(s) 19, 73, 175, 252
BsnI GGCC 2 cut(s) 47, 72
Bsp1286I GDGCHC 2 cut(s) 59, 228
Bsp143I GATC 2 cut(s) 202, 247
Bsp19I CCATGG 1 cut(s) 276
BspACI CCGC 8 cut(s) 39, 137, 147, 166, 291, 329, 335, 338
BspANI GGCC 2 cut(s) 47, 72
BspFNI CGCG 2 cut(s) 134, 163
BspLI GGNNCC 4 cut(s) 37, 58, 112, 322
BspPI GGATC 1 cut(s) 197
BspT107I GGYRCC 4 cut(s) 35, 56, 110, 320
BsrBI CCGCTC 1 cut(s) 139
BssECI CCNNGG 4 cut(s) 42, 67, 276, 324
BssMI GATC 2 cut(s) 202, 247
BssNI GRCGYC 3 cut(s) 111, 231, 243
BssT1I CCWWGG 3 cut(s) 42, 276, 324
Bst2UI CCWGG 2 cut(s) 74, 236
Bst4CI ACNGT 1 cut(s) 130
BstACI GRCGYC 3 cut(s) 111, 231, 243
BstC8I GCNNGC 1 cut(s) 314
BstDSI CCRYGG 1 cut(s) 276
BstENI CCTNNNNNAGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 184, 301
BstFNI CGCG 2 cut(s) 134, 163
BstH2I RGCGCY 1 cut(s) 114
BstHHI GCGC 4 cut(s) 12, 113, 136, 165
BstKTI GATC 2 cut(s) 205, 250
BstMBI GATC 2 cut(s) 202, 247
BstMCI CGRYCG 1 cut(s) 250
BstMWI GCNNNNNNNGC 2 cut(s) 78, 335
BstNI CCWGG 2 cut(s) 74, 236
BstSCI CCNGG 4 cut(s) 67, 72, 149, 234
BstSLI GKGCMC 1 cut(s) 59
BstUI CGCG 2 cut(s) 134, 163
BstV2I GAAGAC 1 cut(s) 272
BsuRI GGCC 2 cut(s) 47, 72
BtgI CCRYGG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 184, 301
Cac8I GCNNGC 1 cut(s) 314
CfoI GCGC 4 cut(s) 12, 113, 136, 165
Cfr13I GGNCC 1 cut(s) 94
CseI GACGC 2 cut(s) 220, 251
CviAII CATG 2 cut(s) 7, 277
CviJI RGCY 5 cut(s) 47, 72, 220, 226, 316
CviKI_1 RGCY 5 cut(s) 47, 72, 220, 226, 316
DinI GGCGCC 1 cut(s) 112
DpnI GATC 2 cut(s) 204, 249
DpnII GATC 2 cut(s) 202, 247
EaeI YGGCCR 1 cut(s) 70
EciI GGCGGA 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 226
Eco130I CCWWGG 3 cut(s) 42, 276, 324
Eco24I GRGCYC 1 cut(s) 228
Eco47I GGWCC 1 cut(s) 94
Eco53kI GAGCTC 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 226
EcoNI CCTNNNNNAGG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 2 cut(s) 72, 234
EcoT14I CCWWGG 3 cut(s) 42, 276, 324
EcoT38I GRGCYC 1 cut(s) 228
EgeI GGCGCC 1 cut(s) 112
EheI GGCGCC 1 cut(s) 112
ErhI CCWWGG 3 cut(s) 42, 276, 324
FaeI CATG 2 cut(s) 10, 280
FaiI YATR 4 cut(s) 8, 201, 212, 278
FatI CATG 2 cut(s) 6, 276
FauI CCCGC 2 cut(s) 284, 331
Fnu4HI GCNGC 4 cut(s) 137, 147, 166, 336
FokI GGATG 2 cut(s) 191, 308
FriOI GRGCYC 1 cut(s) 228
Fsp4HI GCNGC 4 cut(s) 137, 147, 166, 336
FspBI CTAG 2 cut(s) 173, 221
GlaI GCGC 4 cut(s) 11, 112, 135, 164
GluI GCNGC 4 cut(s) 137, 147, 166, 336
HaeII RGCGCY 1 cut(s) 114
HaeIII GGCC 2 cut(s) 47, 72
HapII CCGG 2 cut(s) 69, 150
HgaI GACGC 2 cut(s) 220, 251
HhaI GCGC 4 cut(s) 12, 113, 136, 165
Hin1I GRCGYC 3 cut(s) 111, 231, 243
Hin1II CATG 2 cut(s) 10, 280
Hin6I GCGC 4 cut(s) 10, 111, 134, 163
HinP1I GCGC 4 cut(s) 10, 111, 134, 163
HpaII CCGG 2 cut(s) 69, 150
HphI GGTGA 3 cut(s) 55, 94, 311
Hpy188I TCNGA 2 cut(s) 217, 252
Hpy99I CGWCG 2 cut(s) 134, 245
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 1 cut(s) 130
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 335
Hsp92I GRCGYC 3 cut(s) 111, 231, 243
Hsp92II CATG 2 cut(s) 10, 280
HspAI GCGC 4 cut(s) 10, 111, 134, 163
KasI GGCGCC 1 cut(s) 110
Kzo9I GATC 2 cut(s) 202, 247
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 6 cut(s) 59, 82, 86, 163, 221, 248
LweI GCATC 1 cut(s) 169
MaeI CTAG 2 cut(s) 173, 221
MaeIII GTNAC 1 cut(s) 100
MalI GATC 2 cut(s) 204, 249
MbiI CCGCTC 1 cut(s) 139
MboI GATC 2 cut(s) 202, 247
MboII GAAGA 1 cut(s) 277
MhlI GDGCHC 2 cut(s) 59, 228
Mly113I GGCGCC 1 cut(s) 111
MseI TTAA 1 cut(s) 155
MspI CCGG 2 cut(s) 69, 150
MspR9I CCNGG 4 cut(s) 69, 74, 151, 236
MvaI CCWGG 2 cut(s) 74, 236
MvnI CGCG 2 cut(s) 134, 163
MwoI GCNNNNNNNGC 2 cut(s) 78, 335
NarI GGCGCC 1 cut(s) 111
NciI CCSGG 2 cut(s) 69, 151
NcoI CCATGG 1 cut(s) 276
NdeII GATC 2 cut(s) 202, 247
NlaIII CATG 2 cut(s) 10, 280
NlaIV GGNNCC 4 cut(s) 37, 58, 112, 322
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 100
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 114
PflFI GACNNNGTC 1 cut(s) 98
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 4 cut(s) 138, 148, 167, 337
Ple19I CGATCG 1 cut(s) 250
PluTI GGCGCC 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 94
Psp124BI GAGCTC 1 cut(s) 228
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 2 cut(s) 72, 234
PspGI CCWGG 2 cut(s) 72, 234
PspN4I GGNNCC 4 cut(s) 37, 58, 112, 322
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 98
PvuI CGATCG 1 cut(s) 250
SacI GAGCTC 1 cut(s) 228
SaqAI TTAA 1 cut(s) 155
SatI GCNGC 4 cut(s) 137, 147, 166, 336
Sau3AI GATC 2 cut(s) 202, 247
Sau96I GGNCC 1 cut(s) 94
ScrFI CCNGG 4 cut(s) 69, 74, 151, 236
SduI GDGCHC 2 cut(s) 59, 228
SetI ASST 7 cut(s) 24, 62, 78, 99, 222, 228, 318
SfaNI GCATC 1 cut(s) 169
SfoI GGCGCC 1 cut(s) 112
SinI GGWCC 1 cut(s) 94
SsiI CCGC 8 cut(s) 39, 137, 147, 166, 291, 329, 335, 338
SspDI GGCGCC 1 cut(s) 110
SspMI CTAG 2 cut(s) 173, 221
SstI GAGCTC 1 cut(s) 228
StyD4I CCNGG 4 cut(s) 67, 72, 149, 234
StyI CCWWGG 3 cut(s) 42, 276, 324
TaaI ACNGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 51, 90
TauI GCSGC 4 cut(s) 139, 149, 168, 338
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
TseFI GTSAC 1 cut(s) 100
Tsp45I GTSAC 1 cut(s) 100
TspGWI ACGGA 3 cut(s) 106, 131, 195
Tth111I GACNNNGTC 1 cut(s) 98
VpaK11BI GGWCC 1 cut(s) 94
XagI CCTNNNNNAGG 1 cut(s) 173
XspI CTAG 2 cut(s) 173, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.