Rh4CG013100

Uridine 5-monophosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0021033
Physical Location & Seq
Reverse (-)
2257352 .. 2257519
168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG013100.1

Sequence Viewer

Length: 168 bp
ATGACGTCCCAATGCTCATGCGCCGCCAAGGAGGTCAAGGACTACGGTACCGCCACGGCCATCGAAGGCGAATTCAAGCCCGTCCAGGTCTGCCTCATCATCGAGGACCTCGTCACCAGCGGCGCCTTCGTTCTCGAGACTGCCTCGCCGCTCAGAGCGCCGGGTTGA

Protein Analysis

55

Amino Acids

5.75

Weight (kDa)

4.49

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03840
rosa_chinensis RchiOBHm_Chr4g0435201 RchiOBHm_Chr5g0023651
rosa_roxburghii Rroxscaffold_5G00380830
rosa_samantha Rh4CG013100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc65I GGTACC 1 cut(s) 47
AccB1I GGYRCC 2 cut(s) 47, 122
AccBSI CCGCTC 1 cut(s) 151
AciI CCGC 4 cut(s) 24, 51, 120, 149
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 71
AcyI GRCGYC 2 cut(s) 5, 123
AfaI GTAC 1 cut(s) 49
AgsI TTSAA 1 cut(s) 76
AjnI CCWGG 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 71
Asp718I GGTACC 1 cut(s) 47
AspLEI GCGC 3 cut(s) 23, 125, 160
AspS9I GGNCC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 106
BaeI ACNNNNGTAYC 2 cut(s) 31, 64
BanI GGYRCC 2 cut(s) 47, 122
BccI CCATC 1 cut(s) 68
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 131
BfoI RGCGCY 2 cut(s) 126, 161
BisI GCNGC 3 cut(s) 24, 121, 149
BlsI GCNGC 3 cut(s) 25, 122, 150
Bme1390I CCNGG 2 cut(s) 86, 162
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 2 cut(s) 49, 124
BmrFI CCNGG 2 cut(s) 86, 162
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuMI CCSGG 1 cut(s) 162
BsaHI GRCGYC 2 cut(s) 5, 123
BsaJI CCNNGG 2 cut(s) 27, 54
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 27, 54
BseMII CTCAG 1 cut(s) 166
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 2 cut(s) 47, 122
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 161
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 59
BsoBI CYCGRG 1 cut(s) 134
BspACI CCGC 4 cut(s) 24, 51, 120, 149
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 165
BspLI GGNNCC 2 cut(s) 49, 124
BspT107I GGYRCC 2 cut(s) 47, 122
BsrBI CCGCTC 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 27, 54
BssNI GRCGYC 2 cut(s) 5, 123
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 47
BstACI GRCGYC 2 cut(s) 5, 123
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 54
BstH2I RGCGCY 2 cut(s) 126, 161
BstHHI GCGC 3 cut(s) 23, 125, 160
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 84, 160
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 54
CfoI GCGC 3 cut(s) 23, 125, 160
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 48
CviAII CATG 1 cut(s) 18
CviJI RGCY 2 cut(s) 59, 79
CviKI_1 RGCY 2 cut(s) 59, 79
CviQI GTAC 1 cut(s) 48
DdeI CTNAG 1 cut(s) 152
DinI GGCGCC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 106
Eco88I CYCGRG 1 cut(s) 134
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 27
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 1 cut(s) 21
FaiI YATR 1 cut(s) 19
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 3 cut(s) 24, 121, 149
Fsp4HI GCNGC 3 cut(s) 24, 121, 149
GlaI GCGC 3 cut(s) 22, 124, 159
GluI GCNGC 3 cut(s) 24, 121, 149
HaeII RGCGCY 2 cut(s) 126, 161
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 161
HhaI GCGC 3 cut(s) 23, 125, 160
Hin1I GRCGYC 2 cut(s) 5, 123
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 3 cut(s) 21, 123, 158
HinP1I GCGC 3 cut(s) 21, 123, 158
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 2 cut(s) 134, 136
HpyAV CCTTC 2 cut(s) 59, 136
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 2 cut(s) 5, 123
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 3 cut(s) 21, 123, 158
KasI GGCGCC 1 cut(s) 122
KpnI GGTACC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 71, 98, 130
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 112
MbiI CCGCTC 1 cut(s) 151
MluCI AATT 1 cut(s) 71
Mly113I GGCGCC 1 cut(s) 123
MnlI CCTC 5 cut(s) 25, 97, 104, 119, 154
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 86, 162
MvaI CCWGG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 123
NciI CCSGG 1 cut(s) 162
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 2 cut(s) 49, 124
NmuCI GTSAC 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 25, 122, 150
PluTI GGCGCC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 2 cut(s) 49, 124
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 1 cut(s) 49
RsaNI GTAC 1 cut(s) 48
SatI GCNGC 3 cut(s) 24, 121, 149
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 2 cut(s) 86, 162
SetI ASST 4 cut(s) 8, 36, 90, 111
SfoI GGCGCC 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 134
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 71
SsiI CCGC 4 cut(s) 24, 51, 120, 149
SspDI GGCGCC 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 84, 160
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 63, 102, 135
TasI AATT 1 cut(s) 71
TauI GCSGC 3 cut(s) 26, 123, 151
TseFI GTSAC 1 cut(s) 112
Tsp45I GTSAC 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.