Rroxscaffold_5G00380830

Uridine 5-monophosphate

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0021033
Physical Location & Seq
Forward (+)
60968559 .. 60969040
482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380830.1

Sequence Viewer

Length: 243 bp
ATGACGTCCCAATGCTCATGCCCCGCCAAGGAGGTCAAGGACTACTGTACTGCCAAGGCCATCGAAGGAGAATTCAAGCCCGTCCAGGTCTGCCTCATCATCGAGGACCTCGTCACCGGTGGCGCCTTCGTTCTCGAGACCGCCGCGCTGCTCGGAGCGCGGGTTGAAGCTGGAAGAGAGGAGCAAACCCGAGCACCGACAGGGCGAGAGTATCGGGAGTACAATATATCAGCAGAACCTTAG

Protein Analysis

80

Amino Acids

8.71

Weight (kDa)

4.76

Isoelectric Point (pI)

48.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021033)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03840
rosa_chinensis RchiOBHm_Chr4g0435201 RchiOBHm_Chr5g0023651
rosa_roxburghii Rroxscaffold_5G00380830
rosa_samantha Rh4CG013100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccB1I GGYRCC 1 cut(s) 122
AccII CGCG 2 cut(s) 146, 160
AciI CCGC 4 cut(s) 24, 141, 144, 160
AcsI RAATTY 1 cut(s) 71
AcyI GRCGYC 2 cut(s) 5, 123
AfaI GTAC 2 cut(s) 49, 221
AfiI CCNNNNNNNGG 1 cut(s) 28
AgeI ACCGGT 1 cut(s) 116
AgsI TTSAA 2 cut(s) 76, 167
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 170
AluI AGCT 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 131
Ama87I CYCGRG 2 cut(s) 134, 189
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 71
AsiGI ACCGGT 1 cut(s) 116
AspLEI GCGC 3 cut(s) 125, 148, 160
AspS9I GGNCC 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 106
AvaI CYCGRG 2 cut(s) 134, 189
AvaII GGWCC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 196
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 68
BciT130I CCWGG 1 cut(s) 86
BcoDI GTCTC 1 cut(s) 131
BfoI RGCGCY 1 cut(s) 126
BisI GCNGC 2 cut(s) 144, 149
BlsI GCNGC 2 cut(s) 145, 150
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 106
BmeT110I CYCGRG 2 cut(s) 134, 189
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 124
BmrFI CCNGG 1 cut(s) 86
BsaHI GRCGYC 2 cut(s) 5, 123
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 27, 54
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 28
Bse118I RCCGGY 1 cut(s) 116
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 27, 54
BseLI CCNNNNNNNGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 194
BseXI GCAGC 1 cut(s) 135
Bsh1236I CGCG 2 cut(s) 146, 160
BshFI GGCC 1 cut(s) 59
BshNI GGYRCC 1 cut(s) 122
BshTI ACCGGT 1 cut(s) 116
BsiHKAI GWGCWC 1 cut(s) 196
BsiHKCI CYCGRG 2 cut(s) 134, 189
BsiSI CCGG 1 cut(s) 117
BslI CCNNNNNNNGG 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 131
BsnI GGCC 1 cut(s) 59
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 2 cut(s) 134, 189
Bsp1286I GDGCHC 1 cut(s) 196
BspACI CCGC 4 cut(s) 24, 141, 144, 160
BspANI GGCC 1 cut(s) 59
BspFNI CGCG 2 cut(s) 146, 160
BspLI GGNNCC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 131
BsrFI RCCGGY 1 cut(s) 116
BssAI RCCGGY 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 27, 54
BssNI GRCGYC 2 cut(s) 5, 123
BssT1I CCWWGG 2 cut(s) 27, 54
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 47
Bst6I CTCTTC 1 cut(s) 169
BstACI GRCGYC 2 cut(s) 5, 123
BstDEI CTNAG 1 cut(s) 240
BstFNI CGCG 2 cut(s) 146, 160
BstH2I RGCGCY 1 cut(s) 126
BstHHI GCGC 3 cut(s) 125, 148, 160
BstMAI GTCTC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstUI CGCG 2 cut(s) 146, 160
BstV1I GCAGC 1 cut(s) 135
BsuRI GGCC 1 cut(s) 59
CfoI GCGC 3 cut(s) 125, 148, 160
Cfr10I RCCGGY 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 106
Csp6I GTAC 2 cut(s) 48, 220
CspAI ACCGGT 1 cut(s) 116
CviAII CATG 1 cut(s) 18
CviJI RGCY 3 cut(s) 59, 79, 170
CviKI_1 RGCY 3 cut(s) 59, 79, 170
CviQI GTAC 2 cut(s) 48, 220
DdeI CTNAG 1 cut(s) 240
DinI GGCGCC 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Eco130I CCWWGG 2 cut(s) 27, 54
Eco31I GGTCTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 106
Eco88I CYCGRG 2 cut(s) 134, 189
EcoO109I RGGNCCY 1 cut(s) 106
EcoRI GAATTC 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 2 cut(s) 27, 54
EgeI GGCGCC 1 cut(s) 124
EheI GGCGCC 1 cut(s) 124
ErhI CCWWGG 2 cut(s) 27, 54
FaeI CATG 1 cut(s) 21
FaiI YATR 2 cut(s) 19, 227
FatI CATG 1 cut(s) 17
FauI CCCGC 2 cut(s) 31, 153
Fnu4HI GCNGC 2 cut(s) 144, 149
Fsp4HI GCNGC 2 cut(s) 144, 149
GlaI GCGC 3 cut(s) 124, 147, 159
GluI GCNGC 2 cut(s) 144, 149
HaeII RGCGCY 1 cut(s) 126
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 117
HhaI GCGC 3 cut(s) 125, 148, 160
Hin1I GRCGYC 2 cut(s) 5, 123
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 3 cut(s) 123, 146, 158
HinP1I GCGC 3 cut(s) 123, 146, 158
HpaII CCGG 1 cut(s) 117
HphI GGTGA 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 3 cut(s) 134, 136, 215
HpyAV CCTTC 2 cut(s) 59, 136
HpyCH4III ACNGT 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 5
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 5
Hsp92I GRCGYC 2 cut(s) 5, 123
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 3 cut(s) 123, 146, 158
KasI GGCGCC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 155, 181
LpnPI CCDG 5 cut(s) 71, 98, 130, 156, 186
Lsp1109I GCAGC 1 cut(s) 135
MaeII ACGT 1 cut(s) 5
MaeIII GTNAC 1 cut(s) 112
MboII GAAGA 1 cut(s) 186
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 1 cut(s) 71
Mly113I GGCGCC 1 cut(s) 123
MnlI CCTC 5 cut(s) 25, 97, 104, 119, 172
MspI CCGG 1 cut(s) 117
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 146, 160
MwoI GCNNNNNNNGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 123
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 124
NmuCI GTSAC 1 cut(s) 112
PaeR7I CTCGAG 1 cut(s) 134
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PflFI GACNNNGTC 1 cut(s) 110
PinAI ACCGGT 1 cut(s) 116
PkrI GCNGC 2 cut(s) 145, 150
PluTI GGCGCC 1 cut(s) 126
PpuMI RGGWCCY 1 cut(s) 106
Psp5II RGGWCCY 1 cut(s) 106
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 1 cut(s) 106
PspPPI RGGWCCY 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 110
RsaI GTAC 2 cut(s) 49, 221
RsaNI GTAC 2 cut(s) 48, 220
SatI GCNGC 2 cut(s) 144, 149
Sau96I GGNCC 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 196
SetI ASST 6 cut(s) 8, 36, 90, 111, 172, 241
SfoI GGCGCC 1 cut(s) 124
Sfr274I CTCGAG 1 cut(s) 134
SgrAI CRCCGGYG 1 cut(s) 116
SinI GGWCC 1 cut(s) 106
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 71
SsiI CCGC 4 cut(s) 24, 141, 144, 160
SspDI GGCGCC 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 84
StyI CCWWGG 2 cut(s) 27, 54
TaaI ACNGT 1 cut(s) 47
TaiI ACGT 1 cut(s) 8
TaqI TCGA 3 cut(s) 63, 102, 135
TasI AATT 1 cut(s) 71
TatI WGTACW 2 cut(s) 47, 219
TauI GCSGC 1 cut(s) 146
TseFI GTSAC 1 cut(s) 112
TseI GCWGC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 112
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 106
XapI RAATTY 1 cut(s) 71
XhoI CTCGAG 1 cut(s) 134
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.