Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017998

Physical Location & Seq

Genomic Coordinates Reverse (-)

3502962 .. 3503896

Gene Structure 935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g06051.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTAATCACCAGGAACCGGAAGTGACACCAGAGTCCTTGGAACGTATAGAGTTATTCTTGTCCAACATGAACGATAGCCTAAAACTGAATTTAAGCTCCTTCATCCTTGATAATCTGGAAGACTTTCGCAGTGGCCGCGCCACCCATAGATATTCTCATTGCCCTGTCCCCGCCTCCTTTGATGAAGGGCGTGTCGTTGGGGGTCAACTTCAGTTCTCTGAAGACGGCAAAGAGGTTGACTGCACTAAAATGCAGGGGGGCAAAATCATCCCAAATCTCGCCAACGTTACAGTCGTTGATATGAAGAGTAGTACTGGAGAATTCATCTTAGTAGTTCAGAGGTACGAGAATTTTCGAAGATTGGCAGCGGCTGCTAGTAAATTTATAGTTGTGAATGTTGAAGAGGAGCTTGACTCGAAGACGAAGCTCTTTCTGTGTAAGCTGAAGAAGGAGTTGAAGCTTCCAGTTCTTGCACTTGTGGACAGCAGTCCAGATGGGCTTAAGATTATTTCGACTGTATCTCAATGCTGCGGCGGGTGCGATGTAACTTGGATCGGAATATTCCCAAGCGAATTGGATGAAGGAGAAGATGACGAATCTAAAATTGTTAGGGAGCCGACTGTGAGTAAGAAGAATCTGATAAGGAATGCTTTTTGGGAGAAGAAGAGGAACAATGGGACATGGCATGACGAGCTGACTAGGATGAAGAAATCCATGACGACAACCAGGGTTGAGGATTTTGGCGATTTCATGAGCATGCTGTATACTATGGTGCTAGTAGCCAGTGAACCTTGTGAGGCACGTACGAGCCTACGAGGTGATCAAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

278

Amino Acids

31.18

Weight (kDa)

5.18

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	109 - 248	7.7e-12	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017998)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06051 FvH4_4g12771
rosa_laevigata	RLG00000003317 RLG00000003318
rosa_multiflora	Rmu_sc0003652.1_g000002 Rmu_sc0005065.1_g000016
rosa_roxburghii	Rroxscaffold_3G00251590
rosa_samantha	Rh7AG228500 Rh7BG224900 Rh7CG243100 Rh7CG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	34
AccI	GTMKAC	1 cut(s)	767
AccII	CGCG	1 cut(s)	141
AciI	CCGC	5 cut(s)	139, 174, 371, 534, 537
AclI	AACGTT	1 cut(s)	288
AclWI	GGATC	1 cut(s)	563
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	4 cut(s)	91, 323, 352, 383
AcuI	CTGAAG	3 cut(s)	197, 243, 467
AfaI	GTAC	3 cut(s)	316, 347, 808
AfiI	CCNNNNNNNGG	1 cut(s)	19
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	2 cut(s)	404, 460
AjnI	CCWGG	2 cut(s)	12, 728
AluBI	AGCT	6 cut(s)	99, 412, 430, 445, 463, 697
AluI	AGCT	6 cut(s)	99, 412, 430, 445, 463, 697
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	374
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	368, 374, 531
ApoI	RAATTY	4 cut(s)	91, 323, 352, 383
Asp700I	GAANNNNTTC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	833
AsuII	TTCGAA	1 cut(s)	358
BbsI	GAAGAC	3 cut(s)	129, 231, 428
BbvI	GCAGC	3 cut(s)	361, 380, 518
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	2 cut(s)	14, 730
BclI	TGATCA	1 cut(s)	823
BfaI	CTAG	3 cut(s)	378, 702, 779
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	6 cut(s)	139, 369, 372, 375, 532, 535
BlsI	GCNGC	6 cut(s)	140, 370, 373, 376, 533, 536
BmcAI	AGTACT	1 cut(s)	316
Bme1390I	CCNGG	2 cut(s)	14, 730
BmiI	GGNNCC	2 cut(s)	18, 618
BmrFI	CCNGG	2 cut(s)	14, 730
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	3 cut(s)	129, 231, 428
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpmI	CTGGAG	1 cut(s)	339
Bpu14I	TTCGAA	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	806
BsaJI	CCNNGG	2 cut(s)	39, 729
BsaWI	WCCGGW	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse1I	ACTGG	3 cut(s)	322, 467, 786
Bse3DI	GCAATG	1 cut(s)	160
BseBI	CCWGG	2 cut(s)	14, 730
BseDI	CCNNGG	2 cut(s)	39, 729
BseGI	GGATG	4 cut(s)	105, 270, 586, 711
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	1 cut(s)	160
BseNI	ACTGG	3 cut(s)	322, 467, 786
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	361, 380, 518
BsgI	GTGCAG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	138
BsiSI	CCGG	1 cut(s)	20
BsiWI	CGTACG	1 cut(s)	806
BslFI	GGGAC	2 cut(s)	155, 694
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	2 cut(s)	155, 694
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	1 cut(s)	138
Bsp119I	TTCGAA	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	555, 823
BspACI	CCGC	5 cut(s)	139, 174, 371, 534, 537
BspANI	GGCC	1 cut(s)	138
BspFNI	CGCG	1 cut(s)	141
BspHI	TCATGA	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	18, 618
BspPI	GGATC	1 cut(s)	563
BspT104I	TTCGAA	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	3 cut(s)	322, 467, 786
BssECI	CCNNGG	2 cut(s)	39, 729
BssMI	GATC	2 cut(s)	555, 823
BssNAI	GTATAC	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	39
Bst1107I	GTATAC	1 cut(s)	768
Bst2UI	CCWGG	2 cut(s)	14, 730
Bst4CI	ACNGT	3 cut(s)	295, 520, 625
Bst6I	CTCTTC	3 cut(s)	302, 399, 662
BstAFI	CTTAAG	1 cut(s)	503
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	806
BstBI	TTCGAA	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	761
BstDEI	CTNAG	1 cut(s)	331
BstF5I	GGATG	4 cut(s)	105, 270, 586, 711
BstFNI	CGCG	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	558, 826
BstMBI	GATC	2 cut(s)	555, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 374, 540, 694
BstNI	CCWGG	2 cut(s)	14, 730
BstNSI	RCATGY	1 cut(s)	763
BstPAI	GACNNNNGTC	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	12, 728
BstUI	CGCG	1 cut(s)	141
BstV1I	GCAGC	3 cut(s)	361, 380, 518
BstV2I	GAAGAC	3 cut(s)	129, 231, 428
BstZ17I	GTATAC	1 cut(s)	768
BsuRI	GGCC	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	558
BtsCI	GGATG	4 cut(s)	105, 270, 586, 711
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	139, 793
Cac8I	GCNNGC	1 cut(s)	761
CaiI	CAGNNNCTG	1 cut(s)	374
CciI	TCATGA	1 cut(s)	753
CfoI	GCGC	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	315, 346, 807
CviAII	CATG	6 cut(s)	70, 684, 689, 718, 754, 760
CviQI	GTAC	3 cut(s)	315, 346, 807
DdeI	CTNAG	1 cut(s)	331
DpnI	GATC	2 cut(s)	557, 825
DpnII	GATC	2 cut(s)	555, 823
DrdI	GACNNNNNNGTC	1 cut(s)	34
DseDI	GACNNNNNNGTC	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	3 cut(s)	302, 399, 662
EarI	CTCTTC	3 cut(s)	302, 399, 662
Eco130I	CCWWGG	1 cut(s)	39
Eco57I	CTGAAG	3 cut(s)	197, 243, 467
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	12, 728
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	6 cut(s)	73, 687, 692, 721, 757, 763
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 637, 669
FaqI	GGGAC	2 cut(s)	155, 694
FatI	CATG	6 cut(s)	69, 683, 688, 717, 753, 759
FauI	CCCGC	2 cut(s)	181, 530
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	767
Fnu4HI	GCNGC	6 cut(s)	139, 369, 372, 375, 532, 535
FokI	GGATG	4 cut(s)	92, 257, 593, 718
Fsp4HI	GCNGC	6 cut(s)	139, 369, 372, 375, 532, 535
FspBI	CTAG	3 cut(s)	378, 702, 779
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	6 cut(s)	139, 369, 372, 375, 532, 535
GsuI	CTGGAG	1 cut(s)	339
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	6 cut(s)	73, 687, 692, 721, 757, 763
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	2 cut(s)	209, 241
HindII	GTYRAC	2 cut(s)	209, 241
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	4 cut(s)	35, 416, 599, 637
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	5 cut(s)	209, 241, 484, 768, 791
Hpy188I	TCNGA	4 cut(s)	223, 342, 560, 642
Hpy188III	TCNNGA	4 cut(s)	119, 494, 754, 827
Hpy8I	GTNNAC	5 cut(s)	209, 241, 484, 768, 791
HpyAV	CCTTC	4 cut(s)	112, 182, 445, 578
HpyCH4III	ACNGT	3 cut(s)	295, 520, 625
HpyCH4IV	ACGT	3 cut(s)	46, 288, 805
HpyCH4V	TGCA	3 cut(s)	246, 256, 476
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 374, 540, 694
HpyF3I	CTNAG	1 cut(s)	331
HpySE526I	ACGT	3 cut(s)	46, 288, 805
Hsp92II	CATG	6 cut(s)	73, 687, 692, 721, 757, 763
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	2 cut(s)	555, 823
LmnI	GCTCC	3 cut(s)	104, 409, 616
Lsp1109I	GCAGC	3 cut(s)	361, 380, 518
MaeI	CTAG	3 cut(s)	378, 702, 779
MaeII	ACGT	3 cut(s)	46, 288, 805
MaeIII	GTNAC	3 cut(s)	25, 289, 547
MalI	GATC	2 cut(s)	557, 825
MboI	GATC	2 cut(s)	555, 823
MluCI	AATT	6 cut(s)	91, 323, 352, 383, 575, 606
MlyI	GAGTC	2 cut(s)	44, 410
MmeI	TCCRAC	1 cut(s)	90
MnlI	CCTC	8 cut(s)	187, 229, 336, 400, 663, 730, 793, 812
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	2 cut(s)	95, 504
MslI	CAYNNNNRTG	2 cut(s)	251, 758
MspA1I	CMGCKG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	2 cut(s)	14, 730
Mva1269I	GAATGC	1 cut(s)	655
MvaI	CCWGG	2 cut(s)	14, 730
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	138, 374, 540, 694
NdeII	GATC	2 cut(s)	555, 823
NlaIII	CATG	6 cut(s)	73, 687, 692, 721, 757, 763
NlaIV	GGNNCC	2 cut(s)	18, 618
NmuCI	GTSAC	1 cut(s)	25
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	358
PaeI	GCATGC	1 cut(s)	763
PagI	TCATGA	1 cut(s)	753
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	599, 637
Pfl23II	CGTACG	1 cut(s)	806
PkrI	GCNGC	6 cut(s)	140, 370, 373, 376, 533, 536
PleI	GAGTC	2 cut(s)	43, 410
PpsI	GAGTC	2 cut(s)	43, 410
Ppu21I	YACGTR	1 cut(s)	806
PshAI	GACNNNNGTC	1 cut(s)	489
Psp1406I	AACGTT	1 cut(s)	288
Psp6I	CCWGG	2 cut(s)	12, 728
PspGI	CCWGG	2 cut(s)	12, 728
PspLI	CGTACG	1 cut(s)	806
PspN4I	GGNNCC	2 cut(s)	18, 618
PstNI	CAGNNNCTG	1 cut(s)	374
RsaI	GTAC	3 cut(s)	316, 347, 808
RsaNI	GTAC	3 cut(s)	315, 346, 807
RseI	CAYNNNNRTG	2 cut(s)	251, 758
SaqAI	TTAA	2 cut(s)	95, 504
SatI	GCNGC	6 cut(s)	139, 369, 372, 375, 532, 535
Sau3AI	GATC	2 cut(s)	555, 823
ScaI	AGTACT	1 cut(s)	316
SchI	GAGTC	2 cut(s)	44, 410
ScrFI	CCNGG	2 cut(s)	14, 730
SfuI	TTCGAA	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	251, 758
SmlI	CTYRAG	1 cut(s)	503
SmoI	CTYRAG	1 cut(s)	503
SphI	GCATGC	1 cut(s)	763
Sse9I	AATT	6 cut(s)	91, 323, 352, 383, 575, 606
SsiI	CCGC	5 cut(s)	139, 174, 371, 534, 537
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	3 cut(s)	378, 702, 779
StyD4I	CCNGG	2 cut(s)	12, 728
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	3 cut(s)	295, 520, 625
TaiI	ACGT	3 cut(s)	49, 291, 808
TaqI	TCGA	3 cut(s)	358, 419, 515
TasI	AATT	6 cut(s)	91, 323, 352, 383, 575, 606
TatI	WGTACW	1 cut(s)	314
TauI	GCSGC	3 cut(s)	141, 374, 537
TfiI	GAWTC	2 cut(s)	599, 637
Tru1I	TTAA	2 cut(s)	95, 504
Tru9I	TTAA	2 cut(s)	95, 504
TscAI	CASTG	2 cut(s)	139, 793
TseFI	GTSAC	1 cut(s)	25
TseI	GCWGC	3 cut(s)	368, 374, 531
Tsp45I	GTSAC	1 cut(s)	25
TspDTI	ATGAA	8 cut(s)	86, 94, 201, 316, 320, 597, 722, 742
TspRI	CASTG	2 cut(s)	139, 793
Vha464I	CTTAAG	1 cut(s)	503
XapI	RAATTY	4 cut(s)	91, 323, 352, 383
XceI	RCATGY	1 cut(s)	763
XmiI	GTMKAC	1 cut(s)	767
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	3 cut(s)	378, 702, 779
ZrmI	AGTACT	1 cut(s)	316

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.