Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0017998

Physical Location & Seq

Genomic Coordinates Reverse (-)

21625119 .. 21625817

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG228500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGACGACTGCCTGAAACTGCAATTATGCTCCTTCGTCCTTGAAAACCTGGAAGAATTCCGCCGTGGCCGCGCCACCAAAACATATTCTCATTGCCCTATCCCCGCCTCCATTGAGGAACGGCGTGTCGTTGGGGGTCAACTTCAGTTCTCCGAAGACGGCCAAGAGGTCGACTGCACCAAAACGCAGGGGCGCAAAATCATCCCCAATGTCGACAAGGTTAGGGTCGATGATATGAAGAGTAGTTCTGGTAGGTTCATCTTGGTAGTCCAGAGGTATGAAACTTATCGGAGATTGGTGGTGCCTGCTAATGACAGTGATGTTGATCACGTATTTTACGAGCGTCATCCGTGTATAGCTGTAAATGTTGAAGAGGAACTGGATTCGGTGATGAAGCTCTTTCTGTGTAAGCTGAAGATGGAGCTGAAGCTTCCGATGCTTGCAGTTGTGGACAGCAGTCCAGACGGGGTTAAGATTATTTCGACTGTGTCTCAAATCTCAATGCTGCGGATACGATGTACATTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0001708 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0008544 GO:0009888 GO:0009913 GO:0009957 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030154 GO:0030855 GO:0031974 GO:0031981 GO:0032502 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045165 GO:0046483 GO:0048285 GO:0048856 GO:0048869 GO:0050896 GO:0051321 GO:0051716 GO:0060429 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

176

Amino Acids

20.07

Weight (kDa)

6.32

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	86 - 168	2.6e-07	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017998)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06051 FvH4_4g12771
rosa_laevigata	RLG00000003317 RLG00000003318
rosa_multiflora	Rmu_sc0003652.1_g000002 Rmu_sc0005065.1_g000016
rosa_roxburghii	Rroxscaffold_3G00251590
rosa_samantha	Rh7AG228500 Rh7BG224900 Rh7CG243100 Rh7CG243200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	301
AccI	GTMKAC	2 cut(s)	171, 213
AccII	CGCG	1 cut(s)	72
AciI	CCGC	4 cut(s)	61, 70, 105, 508
AcoI	YGGCCR	2 cut(s)	67, 160
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	3 cut(s)	128, 434, 446
AfaI	GTAC	1 cut(s)	520
AgsI	TTSAA	2 cut(s)	44, 371
AjnI	CCWGG	1 cut(s)	48
AluBI	AGCT	5 cut(s)	359, 397, 412, 424, 430
AluI	AGCT	5 cut(s)	359, 397, 412, 424, 430
Alw26I	GTCTC	1 cut(s)	495
AoxI	GGCC	2 cut(s)	67, 160
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	1 cut(s)	56
AspLEI	GCGC	2 cut(s)	74, 195
AsuHPI	GGTGA	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	492
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	3 cut(s)	48, 137, 175
BciT130I	CCWGG	1 cut(s)	50
BciVI	GTATCC	1 cut(s)	504
BclI	TGATCA	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	504
BisI	GCNGC	2 cut(s)	70, 506
BlsI	GCNGC	2 cut(s)	71, 507
Bme1390I	CCNGG	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	50
BmsI	GCATC	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	456
BpiI	GAAGAC	1 cut(s)	162
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	64
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	1 cut(s)	91
Bse8I	GATNNNNATC	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	201, 346
BseJI	GATNNNNATC	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	91
BseNI	ACTGG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	160
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	69, 162
BshNI	GGYRCC	1 cut(s)	301
BsmAI	GTCTC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	69, 162
Bsp1407I	TGTACA	1 cut(s)	518
Bsp143I	GATC	1 cut(s)	325
BspACI	CCGC	4 cut(s)	61, 70, 105, 508
BspANI	GGCC	2 cut(s)	69, 162
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	1 cut(s)	303
BspT107I	GGYRCC	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	518
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	325
Bst2UI	CCWGG	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	317, 487
Bst6I	CTCTTC	2 cut(s)	233, 366
BstAUI	TGTACA	1 cut(s)	518
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	306, 441
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	201, 346
BstFNI	CGCG	1 cut(s)	72
BstHHI	GCGC	2 cut(s)	74, 195
BstKTI	GATC	1 cut(s)	328
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 436
BstNI	CCWGG	1 cut(s)	50
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	48
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	1 cut(s)	492
BstV2I	GAAGAC	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	504
BsuRI	GGCC	2 cut(s)	69, 162
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	2 cut(s)	201, 346
BtsIMutI	CAGTG	1 cut(s)	322
Cac8I	GCNNGC	2 cut(s)	306, 441
CfoI	GCGC	2 cut(s)	74, 195
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	519
CviJI	RGCY	8 cut(s)	69, 162, 359, 397, 412, 424, 430, 527
CviKI_1	RGCY	8 cut(s)	69, 162, 359, 397, 412, 424, 430, 527
CviQI	GTAC	1 cut(s)	519
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
EaeI	YGGCCR	2 cut(s)	67, 160
Eam1104I	CTCTTC	2 cut(s)	233, 366
EarI	CTCTTC	2 cut(s)	233, 366
EciI	GGCGGA	1 cut(s)	50
Eco57I	CTGAAG	3 cut(s)	128, 434, 446
EcoRI	GAATTC	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	48
FaiI	YATR	5 cut(s)	28, 85, 236, 279, 356
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	171, 213
Fnu4HI	GCNGC	2 cut(s)	70, 506
FokI	GGATG	2 cut(s)	188, 333
Fsp4HI	GCNGC	2 cut(s)	70, 506
GlaI	GCGC	2 cut(s)	73, 194
GluI	GCNGC	2 cut(s)	70, 506
HaeIII	GGCC	2 cut(s)	69, 162
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	74, 195
Hin6I	GCGC	2 cut(s)	72, 193
HinP1I	GCGC	2 cut(s)	72, 193
HincII	GTYRAC	3 cut(s)	140, 172, 214
HindII	GTYRAC	3 cut(s)	140, 172, 214
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	383
HphI	GGTGA	1 cut(s)	400
Hpy166II	GTNNAC	4 cut(s)	140, 172, 214, 451
Hpy188I	TCNGA	3 cut(s)	154, 291, 435
Hpy188III	TCNNGA	2 cut(s)	271, 461
Hpy8I	GTNNAC	4 cut(s)	140, 172, 214, 451
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	2 cut(s)	317, 487
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	3 cut(s)	22, 177, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 436
HpySE526I	ACGT	1 cut(s)	330
HspAI	GCGC	2 cut(s)	72, 193
Ksp22I	TGATCA	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	2 cut(s)	35, 421
LpnPI	CCDG	9 cut(s)	26, 35, 62, 173, 234, 284, 318, 365, 474
Lsp1109I	GCAGC	1 cut(s)	492
LweI	GCATC	1 cut(s)	426
MaeII	ACGT	1 cut(s)	330
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	5 cut(s)	65, 167, 250, 383, 427
MluCI	AATT	2 cut(s)	23, 56
MnlI	CCTC	5 cut(s)	109, 118, 160, 267, 367
MseI	TTAA	1 cut(s)	471
MspR9I	CCNGG	1 cut(s)	50
MvaI	CCWGG	1 cut(s)	50
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	2 cut(s)	69, 436
NdeII	GATC	1 cut(s)	325
NlaIV	GGNNCC	1 cut(s)	303
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	383
PflFI	GACNNNGTC	1 cut(s)	487
PkrI	GCNGC	2 cut(s)	71, 507
Ppu21I	YACGTR	1 cut(s)	331
PshAI	GACNNNNGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	48
PspGI	CCWGG	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	303
PsyI	GACNNNGTC	1 cut(s)	487
RsaI	GTAC	1 cut(s)	520
RsaNI	GTAC	1 cut(s)	519
SalI	GTCGAC	2 cut(s)	170, 212
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	2 cut(s)	70, 506
Sau3AI	GATC	1 cut(s)	325
ScrFI	CCNGG	1 cut(s)	50
SfaNI	GCATC	1 cut(s)	426
Sse9I	AATT	2 cut(s)	23, 56
SsiI	CCGC	4 cut(s)	61, 70, 105, 508
StyD4I	CCNGG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	317, 487
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	4 cut(s)	171, 213, 228, 482
TasI	AATT	2 cut(s)	23, 56
TatI	WGTACW	1 cut(s)	518
TauI	GCSGC	1 cut(s)	72
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TscAI	CASTG	1 cut(s)	322
TseI	GCWGC	1 cut(s)	505
TspDTI	ATGAA	4 cut(s)	247, 251, 294, 407
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	487
XapI	RAATTY	1 cut(s)	56
XmiI	GTMKAC	2 cut(s)	171, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.