FvH4_3g06260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018394
Physical Location & Seq
Forward (+)
3606802 .. 3607905
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g06260.t1

Sequence Viewer

Length: 1104 bp
ATGGCCAACATCGGAGAAAGAGCAGCTCGACGGAGAGGACCGCCCGTCGTGGGAAGAAAACGGAAGTTCCGATCACTAAGTAAGATAATGAAAGAAACTGCAGGAAGAAGAAAGTGGGCGGAGTTAGAGATGGACTGCTTAATCAATGTGTTTGGAAGAGTCGGAATGGAATCACTTCTTGTGAGTGTCCCTTTTGTCTGCAAATCATGGCATGAAGCAACCCTAGATCCTTTGTGCTGGCAAACCCTCTCATTCCCTGAGTTTTTACCACTGCTCGAACCCAATAGTCTTGGTCTGGAGCCATTTTACTACAAGTTTGTTGGTTTATGCCAAGTTAAAAAGAACACTAGTTTCTCCATCACTGCTTTTGTGAGGATGGTAGTGGCTCGGAGTCATGGGAAGGTTGTTGAGATCAAATTTCCTGGCTTTATAAATGAAGAAACATTGAGGTATGTTTCGGGTTCGTGTCCCGGGATTAGGGTTTTGAGCTTGCCAGATGATGTAGTACTTTTTAACCATTCTAGGGTTATTGCGAAACTGATTGGGAAGTGGAAGCTGTTGGAGCAATTGCATTTGGGTGGCAACCTCAAGAAGATTCGCACATTCCGTGCTGACTTGGATAAGAAAAGGATGTACGAGTTGTTTCCAAGGGGGTTGGGTGTTTTTTCTCGTGAAACTATTATGGACGATATCCTGAAGCAGATTGGTATTCACTGCAAGCATTTTGTAGGTCTCAGAATTGCTCATGCTTACAAGGTAAACATCTGCAATATTGTGGAATCATTGCCGAATCTGAAGTACTTGTGGTTCGAGGAGTGTCATTTTGAAGGGAACAGTCTCGTCACGCTAGTGAAAGGCTGCAAACAGCTTGAGGTTTTGGATCTTGGCAAGTGTGGAGAACTTGAAGTCGACAGTGATATTGGTGGTGTGGAAGAGATTGCAAACCTTGCTAAGGACTATGGTGTTGAGTTTCTGTGGCAGAGTGGAGGTGAAGATGGTGAAGAGTATACTCAGTATAGTCTTAAGGCTCAGATGTGGACAAGGCAGTTGCTTTTAAACAGGGGTCGAGTGGCACCATGGATGGAACTAGCTCGTAGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

368

Amino Acids

41.93

Weight (kDa)

9.13

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06260
rosa_chinensis RchiOBHm_Chr5g0013061
rosa_laevigata RLG00000031981
rosa_multiflora Rmu_sc0003892.1_g000016
rosa_roxburghii Rroxscaffold_1G00063520
rosa_rugosa Rorug05G0006900
rosa_samantha Rh5BG097500 Rh5CG109600 Rh5DG096500
rosa_wichuraiana Rw5G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AccB1I GGYRCC 1 cut(s) 1072
AccI GTMKAC 2 cut(s) 909, 1007
AciI CCGC 2 cut(s) 41, 119
AclWI GGATC 2 cut(s) 221, 888
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 2 cut(s) 716, 815
AfaI GTAC 3 cut(s) 507, 635, 800
AfiI CCNNNNNNNGG 4 cut(s) 50, 477, 523, 952
AflII CTTAAG 1 cut(s) 1022
AgsI TTSAA 2 cut(s) 827, 905
AhdI GACNNNNNGTC 1 cut(s) 44
AhlI ACTAGT 1 cut(s) 347
AjnI CCWGG 1 cut(s) 421
AleI CACNNNNGTG 1 cut(s) 848
AluBI AGCT 5 cut(s) 26, 489, 556, 868, 1091
AluI AGCT 5 cut(s) 26, 489, 556, 868, 1091
Alw26I GTCTC 2 cut(s) 737, 842
AlwI GGATC 2 cut(s) 221, 888
Ama87I CYCGRG 1 cut(s) 470
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 23, 858
ApoI RAATTY 1 cut(s) 416
Asp700I GAANNNNTTC 1 cut(s) 174
AspS9I GGNCC 1 cut(s) 38
AsuC2I CCSGG 2 cut(s) 471, 472
AsuHPI GGTGA 2 cut(s) 1001, 1010
AvaI CYCGRG 1 cut(s) 470
AvaII GGWCC 1 cut(s) 38
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 1072
BauI CACGAG 1 cut(s) 669
BbvI GCAGC 2 cut(s) 35, 845
BccI CCATC 5 cut(s) 124, 365, 370, 989, 1075
BciT130I CCWGG 1 cut(s) 423
BcnI CCSGG 2 cut(s) 471, 472
BcoDI GTCTC 2 cut(s) 737, 842
BcuI ACTAGT 1 cut(s) 347
BfaI CTAG 5 cut(s) 224, 348, 522, 848, 1088
BfmI CTRYAG 1 cut(s) 99
BfrI CTTAAG 1 cut(s) 1022
BisI GCNGC 2 cut(s) 24, 859
BlsI GCNGC 2 cut(s) 25, 860
BmcAI AGTACT 2 cut(s) 507, 800
Bme1390I CCNGG 3 cut(s) 423, 471, 472
Bme18I GGWCC 1 cut(s) 38
BmeRI GACNNNNNGTC 1 cut(s) 44
BmeT110I CYCGRG 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 38
BmiI GGNNCC 2 cut(s) 300, 1074
BmrFI CCNGG 3 cut(s) 423, 471, 472
BpmI CTGGAG 1 cut(s) 317
Bpu10I CCTNAGC 1 cut(s) 951
BpuEI CTTGAG 2 cut(s) 572, 890
BpuMI CCSGG 2 cut(s) 471, 472
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 470, 647, 1076
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 477, 523, 952
Bse3DI GCAATG 1 cut(s) 782
BseBI CCWGG 1 cut(s) 423
BseDI CCNNGG 3 cut(s) 470, 647, 1076
BseGI GGATG 3 cut(s) 381, 636, 1086
BseLI CCNNNNNNNGG 4 cut(s) 50, 477, 523, 952
BseMI GCAATG 1 cut(s) 782
BseMII CTCAG 4 cut(s) 249, 748, 1025, 1043
BseRI GAGGAG 1 cut(s) 827
BseXI GCAGC 2 cut(s) 35, 845
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 1072
BsiHKCI CYCGRG 1 cut(s) 470
BsiSI CCGG 1 cut(s) 471
BslFI GGGAC 2 cut(s) 173, 453
BslI CCNNNNNNNGG 4 cut(s) 50, 477, 523, 952
BsmAI GTCTC 2 cut(s) 737, 842
BsmFI GGGAC 2 cut(s) 173, 453
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 737
BsoBI CYCGRG 1 cut(s) 470
Bsp143I GATC 4 cut(s) 71, 226, 411, 880
Bsp19I CCATGG 1 cut(s) 1076
BspACI CCGC 2 cut(s) 41, 119
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 4 cut(s) 250, 747, 1024, 1042
BspLI GGNNCC 2 cut(s) 300, 1074
BspMAI CTGCAG 1 cut(s) 103
BspPI GGATC 2 cut(s) 221, 888
BspT107I GGYRCC 1 cut(s) 1072
BspTI CTTAAG 1 cut(s) 1022
BspTNI GGTCTC 1 cut(s) 737
BsrDI GCAATG 1 cut(s) 782
BssECI CCNNGG 3 cut(s) 470, 647, 1076
BssMI GATC 4 cut(s) 71, 226, 411, 880
BssNAI GTATAC 1 cut(s) 1008
BssSI CACGAG 1 cut(s) 669
BssT1I CCWWGG 2 cut(s) 647, 1076
Bst1107I GTATAC 1 cut(s) 1008
Bst2BI CACGAG 1 cut(s) 669
Bst2UI CCWGG 1 cut(s) 423
Bst4CI ACNGT 2 cut(s) 836, 914
Bst6I CTCTTC 3 cut(s) 151, 927, 996
BstAFI CTTAAG 1 cut(s) 1022
BstAPI GCANNNNNTGC 1 cut(s) 947
BstC8I GCNNGC 3 cut(s) 239, 491, 719
BstDEI CTNAG 6 cut(s) 77, 258, 734, 951, 1011, 1029
BstDSI CCRYGG 1 cut(s) 1076
BstENI CCTNNNNNAGG 1 cut(s) 950
BstF5I GGATG 3 cut(s) 381, 636, 1086
BstKTI GATC 4 cut(s) 74, 229, 414, 883
BstMAI GTCTC 2 cut(s) 737, 842
BstMBI GATC 4 cut(s) 71, 226, 411, 880
BstMWI GCNNNNNNNGC 2 cut(s) 562, 947
BstNI CCWGG 1 cut(s) 423
BstSCI CCNGG 3 cut(s) 421, 469, 470
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 35, 845
BstX2I RGATCY 2 cut(s) 226, 880
BstYI RGATCY 2 cut(s) 226, 880
BstZ17I GTATAC 1 cut(s) 1008
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 1076
BtsCI GGATG 3 cut(s) 381, 636, 1086
BtsI GCAGTG 3 cut(s) 269, 360, 712
BtsIMutI CAGTG 4 cut(s) 269, 360, 712, 919
Cac8I GCNNGC 3 cut(s) 239, 491, 719
Cfr13I GGNCC 1 cut(s) 38
Cfr9I CCCGGG 1 cut(s) 470
Csp6I GTAC 3 cut(s) 506, 634, 799
CviAII CATG 5 cut(s) 207, 212, 395, 746, 1077
CviQI GTAC 3 cut(s) 506, 634, 799
DdeI CTNAG 6 cut(s) 77, 258, 734, 951, 1011, 1029
DpnI GATC 4 cut(s) 73, 228, 413, 882
DpnII GATC 4 cut(s) 71, 226, 411, 880
DraI TTTAAA 1 cut(s) 1056
DriI GACNNNNNGTC 1 cut(s) 44
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 151, 927, 996
Eam1105I GACNNNNNGTC 1 cut(s) 44
EarI CTCTTC 3 cut(s) 151, 927, 996
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 647, 1076
Eco31I GGTCTC 1 cut(s) 737
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 2 cut(s) 716, 815
Eco88I CYCGRG 1 cut(s) 470
EcoNI CCTNNNNNAGG 1 cut(s) 950
EcoRII CCWGG 1 cut(s) 421
EcoRV GATATC 1 cut(s) 691
EcoT14I CCWWGG 2 cut(s) 647, 1076
ErhI CCWWGG 2 cut(s) 647, 1076
FaeI CATG 5 cut(s) 210, 215, 398, 749, 1080
FaqI GGGAC 2 cut(s) 173, 453
FatI CATG 5 cut(s) 206, 211, 394, 745, 1076
FblI GTMKAC 2 cut(s) 909, 1007
Fnu4HI GCNGC 2 cut(s) 24, 859
FokI GGATG 3 cut(s) 388, 643, 1093
Fsp4HI GCNGC 2 cut(s) 24, 859
FspBI CTAG 5 cut(s) 224, 348, 522, 848, 1088
GluI GCNGC 2 cut(s) 24, 859
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 471
Hin1II CATG 5 cut(s) 210, 215, 398, 749, 1080
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HinfI GANTC 6 cut(s) 159, 170, 391, 595, 779, 790
HpaII CCGG 1 cut(s) 471
HphI GGTGA 2 cut(s) 1001, 1010
Hpy166II GTNNAC 4 cut(s) 760, 910, 1008, 1038
Hpy188I TCNGA 7 cut(s) 14, 71, 164, 390, 737, 795, 1032
Hpy188III TCNNGA 4 cut(s) 296, 589, 671, 694
Hpy8I GTNNAC 4 cut(s) 760, 910, 1008, 1038
Hpy99I CGWCG 2 cut(s) 33, 50
HpyAV CCTTC 2 cut(s) 394, 821
HpyCH4III ACNGT 2 cut(s) 836, 914
HpyCH4V TGCA 7 cut(s) 101, 201, 571, 717, 768, 861, 941
HpyF10VI GCNNNNNNNGC 2 cut(s) 562, 947
HpyF3I CTNAG 6 cut(s) 77, 258, 734, 951, 1011, 1029
Hsp92II CATG 5 cut(s) 210, 215, 398, 749, 1080
Kzo9I GATC 4 cut(s) 71, 226, 411, 880
LmnI GCTCC 2 cut(s) 298, 562
Lsp1109I GCAGC 2 cut(s) 35, 845
MaeI CTAG 5 cut(s) 224, 348, 522, 848, 1088
MaeIII GTNAC 1 cut(s) 841
MalI GATC 4 cut(s) 73, 228, 413, 882
MboI GATC 4 cut(s) 71, 226, 411, 880
MboII GAAGA 9 cut(s) 66, 117, 120, 168, 449, 604, 944, 1004, 1013
MfeI CAATTG 1 cut(s) 566
MflI RGATCY 2 cut(s) 226, 880
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 3 cut(s) 416, 566, 738
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 168, 400
MmeI TCCRAC 2 cut(s) 142, 540
MnlI CCTC 8 cut(s) 29, 257, 366, 441, 596, 805, 865, 980
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 174
MscI TGGCCA 1 cut(s) 5
MseI TTAA 5 cut(s) 140, 336, 513, 1023, 1055
MslI CAYNNNNRTG 2 cut(s) 576, 848
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 1022
MspI CCGG 1 cut(s) 471
MspR9I CCNGG 3 cut(s) 423, 471, 472
MunI CAATTG 1 cut(s) 566
MvaI CCWGG 1 cut(s) 423
MwoI GCNNNNNNNGC 2 cut(s) 562, 947
NciI CCSGG 2 cut(s) 471, 472
NcoI CCATGG 1 cut(s) 1076
NdeII GATC 4 cut(s) 71, 226, 411, 880
NlaIII CATG 5 cut(s) 210, 215, 398, 749, 1080
NlaIV GGNNCC 2 cut(s) 300, 1074
NmuCI GTSAC 1 cut(s) 841
OliI CACNNNNGTG 1 cut(s) 848
PcsI WCGNNNNNNNCGW 2 cut(s) 67, 604
PdmI GAANNNNTTC 1 cut(s) 174
PfeI GAWTC 4 cut(s) 170, 595, 779, 790
PkrI GCNGC 2 cut(s) 25, 860
PleI GAGTC 2 cut(s) 167, 399
PpsI GAGTC 2 cut(s) 167, 399
PsiI TTATAA 1 cut(s) 431
Psp6I CCWGG 1 cut(s) 421
PspGI CCWGG 1 cut(s) 421
PspN4I GGNNCC 2 cut(s) 300, 1074
PspPI GGNCC 1 cut(s) 38
PsrI GAACNNNNNNTAC 2 cut(s) 791, 823
PstI CTGCAG 1 cut(s) 103
PsuI RGATCY 2 cut(s) 226, 880
RsaI GTAC 3 cut(s) 507, 635, 800
RsaNI GTAC 3 cut(s) 506, 634, 799
RseI CAYNNNNRTG 2 cut(s) 576, 848
SalI GTCGAC 1 cut(s) 908
SaqAI TTAA 5 cut(s) 140, 336, 513, 1023, 1055
SatI GCNGC 2 cut(s) 24, 859
Sau3AI GATC 4 cut(s) 71, 226, 411, 880
Sau96I GGNCC 1 cut(s) 38
ScaI AGTACT 2 cut(s) 507, 800
SchI GAGTC 2 cut(s) 168, 400
ScrFI CCNGG 3 cut(s) 423, 471, 472
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 38
SmaI CCCGGG 1 cut(s) 472
SmiMI CAYNNNNRTG 2 cut(s) 576, 848
SmlI CTYRAG 3 cut(s) 587, 869, 1022
SmoI CTYRAG 3 cut(s) 587, 869, 1022
SpeI ACTAGT 1 cut(s) 347
Sse9I AATT 3 cut(s) 416, 566, 738
SsiI CCGC 2 cut(s) 41, 119
SspI AATATT 1 cut(s) 772
SspMI CTAG 5 cut(s) 224, 348, 522, 848, 1088
StyD4I CCNGG 3 cut(s) 421, 469, 470
StyI CCWWGG 2 cut(s) 647, 1076
TaaI ACNGT 2 cut(s) 836, 914
TaqI TCGA 5 cut(s) 28, 276, 810, 909, 1066
TasI AATT 3 cut(s) 416, 566, 738
TatI WGTACW 2 cut(s) 505, 798
TfiI GAWTC 4 cut(s) 170, 595, 779, 790
Tru1I TTAA 5 cut(s) 140, 336, 513, 1023, 1055
Tru9I TTAA 5 cut(s) 140, 336, 513, 1023, 1055
TscAI CASTG 4 cut(s) 276, 367, 719, 919
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 2 cut(s) 23, 858
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 3 cut(s) 104, 228, 450
TspGWI ACGGA 3 cut(s) 46, 76, 596
TspMI CCCGGG 1 cut(s) 470
TspRI CASTG 4 cut(s) 276, 367, 719, 919
Vha464I CTTAAG 1 cut(s) 1022
VpaK11BI GGWCC 1 cut(s) 38
XagI CCTNNNNNAGG 1 cut(s) 950
XapI RAATTY 1 cut(s) 416
XmaI CCCGGG 1 cut(s) 470
XmiI GTMKAC 2 cut(s) 909, 1007
XmnI GAANNNNTTC 1 cut(s) 174
XspI CTAG 5 cut(s) 224, 348, 522, 848, 1088
ZrmI AGTACT 2 cut(s) 507, 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.