Rorug05G0006900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0018394
Physical Location & Seq
Reverse (-)
409322 .. 409837
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0006900.1

Sequence Viewer

Length: 516 bp
ATGGATCCTCTATTGTTTTTGTTCGTCCTTCTTGTTGCTCTCTTCCCAATATCAGAATCACAACTAGATGGAGAACCAGAGCTCATCGCTCGCGGTTTCATCTCCAGTGATTTGCAGGATGCAGTAAATGATATGAGAGCAAAGTCTTACTATGGATTTGCAATCCTTTTGCAGATGGTGAATGGATCGGCACAACAAAACCGGCCCTTGACCTTCTTCATGCCAGCTGACTCACAATTATCTGAATCCCCAATCTCGGTACAACACCTTGAAGAGTTCATGACAAGCCATGCAATCCCAATGCCTCTCTCGTTCAATGACCTTTTACATTTTCCAACTGGGAGCCTTGTCCCAACTGGTGTTGATAACAAGATGATCAGAATCAACAACCGGGGAAGAACTAGTTTCTATGTTAGCAATGCACACATTGTCACACCAAACATTTGCAATGGCACTTCCTTCAGGTGCCATGGAATTGATGCAGTGATTCAGTTTGGCAATGTTACAGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.88

Weight (kDa)

5.16

Isoelectric Point (pI)

44.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 65 - 163 1.8e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06260
rosa_chinensis RchiOBHm_Chr5g0013061
rosa_laevigata RLG00000031981
rosa_multiflora Rmu_sc0003892.1_g000016
rosa_roxburghii Rroxscaffold_1G00063520
rosa_rugosa Rorug05G0006900
rosa_samantha Rh5BG097500 Rh5CG109600 Rh5DG096500
rosa_wichuraiana Rw5G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 465
AccII CGCG 1 cut(s) 93
AciI CCGC 1 cut(s) 93
AclWI GGATC 2 cut(s) 12, 193
AcuI CTGAAG 1 cut(s) 445
AfaI GTAC 1 cut(s) 261
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 2 cut(s) 272, 316
AhlI ACTAGT 1 cut(s) 401
AluBI AGCT 3 cut(s) 82, 227, 509
AluI AGCT 3 cut(s) 82, 227, 509
Alw21I GWGCWC 1 cut(s) 84
AlwI GGATC 2 cut(s) 12, 193
AoxI GGCC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 1 cut(s) 190
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 465
BanII GRGCYC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 84
BccI CCATC 2 cut(s) 62, 169
BclI TGATCA 1 cut(s) 375
BcnI CCSGG 1 cut(s) 392
BcuI ACTAGT 1 cut(s) 401
BfaI CTAG 2 cut(s) 65, 402
Bme1390I CCNGG 1 cut(s) 392
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 3 cut(s) 6, 344, 467
BmrFI CCNGG 1 cut(s) 392
BmrI ACTGGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 109, 469
BmuI ACTGGG 1 cut(s) 348
BpmI CTGGAG 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 391, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 105, 343, 361
Bse3DI GCAATG 3 cut(s) 424, 454, 505
Bse8I GATNNNNATC 1 cut(s) 380
BseDI CCNNGG 2 cut(s) 391, 469
BseGI GGATG 1 cut(s) 124
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 3 cut(s) 424, 454, 505
BseNI ACTGG 3 cut(s) 105, 343, 361
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 205
BshNI GGYRCC 1 cut(s) 465
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 2 cut(s) 202, 391
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 256
BsmFI GGGAC 1 cut(s) 335
BsnI GGCC 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 84
Bsp143I GATC 3 cut(s) 4, 185, 375
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 1 cut(s) 93
BspANI GGCC 1 cut(s) 205
BspFNI CGCG 1 cut(s) 93
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 3 cut(s) 6, 344, 467
BspPI GGATC 2 cut(s) 12, 193
BspT107I GGYRCC 1 cut(s) 465
BsrDI GCAATG 3 cut(s) 424, 454, 505
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 3 cut(s) 105, 343, 361
BssAI RCCGGY 1 cut(s) 201
BssECI CCNNGG 2 cut(s) 391, 469
BssMI GATC 3 cut(s) 4, 185, 375
BssT1I CCWWGG 1 cut(s) 469
Bst6I CTCTTC 2 cut(s) 47, 267
BstC8I GCNNGC 2 cut(s) 91, 225
BstDSI CCRYGG 1 cut(s) 469
BstF5I GGATG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 3 cut(s) 7, 188, 378
BstMBI GATC 3 cut(s) 4, 185, 375
BstSCI CCNGG 1 cut(s) 390
BstUI CGCG 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 205
BtgI CCRYGG 1 cut(s) 469
BtgZI GCGATG 1 cut(s) 70
BtsCI GGATG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 112, 489
Cac8I GCNNGC 2 cut(s) 91, 225
CciI TCATGA 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 260
CviAII CATG 4 cut(s) 220, 280, 290, 470
CviJI RGCY 6 cut(s) 82, 205, 227, 288, 345, 509
CviKI_1 RGCY 6 cut(s) 82, 205, 227, 288, 345, 509
CviQI GTAC 1 cut(s) 260
DpnI GATC 3 cut(s) 6, 187, 377
DpnII GATC 3 cut(s) 4, 185, 375
Eam1104I CTCTTC 2 cut(s) 47, 267
EarI CTCTTC 2 cut(s) 47, 267
Ecl136II GAGCTC 1 cut(s) 82
Eco130I CCWWGG 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 445
EcoICRI GAGCTC 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 84
ErhI CCWWGG 1 cut(s) 469
FaeI CATG 4 cut(s) 223, 283, 293, 473
FaiI YATR 8 cut(s) 134, 153, 221, 281, 291, 411, 471, 514
FaqI GGGAC 1 cut(s) 335
FatI CATG 4 cut(s) 219, 279, 289, 469
FbaI TGATCA 1 cut(s) 375
FokI GGATG 1 cut(s) 131
FriOI GRGCYC 1 cut(s) 84
FspBI CTAG 2 cut(s) 65, 402
GsuI CTGGAG 1 cut(s) 88
HaeIII GGCC 1 cut(s) 205
HapII CCGG 2 cut(s) 202, 391
Hin1II CATG 4 cut(s) 223, 283, 293, 473
HinfI GANTC 5 cut(s) 56, 230, 245, 381, 487
HpaII CCGG 2 cut(s) 202, 391
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 55, 244, 380
Hpy188III TCNNGA 1 cut(s) 280
HpyAV CCTTC 3 cut(s) 38, 223, 469
HpyCH4V TGCA 8 cut(s) 115, 122, 161, 172, 293, 422, 447, 482
Hsp92II CATG 4 cut(s) 223, 283, 293, 473
Ksp22I TGATCA 1 cut(s) 375
Kzo9I GATC 3 cut(s) 4, 185, 375
LmnI GCTCC 1 cut(s) 342
LpnPI CCDG 9 cut(s) 90, 101, 118, 215, 237, 324, 342, 404, 448
LweI GCATC 2 cut(s) 109, 469
MaeI CTAG 2 cut(s) 65, 402
MaeIII GTNAC 2 cut(s) 430, 502
MalI GATC 3 cut(s) 6, 187, 377
MboI GATC 3 cut(s) 4, 185, 375
MboII GAAGA 4 cut(s) 34, 208, 284, 408
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 2 cut(s) 236, 474
MlyI GAGTC 1 cut(s) 224
MmeI TCCRAC 1 cut(s) 359
MnlI CCTC 2 cut(s) 18, 315
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 2 cut(s) 202, 391
MspR9I CCNGG 1 cut(s) 392
MvnI CGCG 1 cut(s) 93
NciI CCSGG 1 cut(s) 392
NcoI CCATGG 1 cut(s) 469
NdeII GATC 3 cut(s) 4, 185, 375
NlaIII CATG 4 cut(s) 223, 283, 293, 473
NlaIV GGNNCC 3 cut(s) 6, 344, 467
NmuCI GTSAC 1 cut(s) 430
PagI TCATGA 1 cut(s) 279
PfeI GAWTC 4 cut(s) 56, 245, 381, 487
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
Psp124BI GAGCTC 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 6, 344, 467
PspPI GGNCC 1 cut(s) 204
PsuI RGATCY 1 cut(s) 4
PvuII CAGCTG 1 cut(s) 227
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
SacI GAGCTC 1 cut(s) 84
Sau3AI GATC 3 cut(s) 4, 185, 375
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 1 cut(s) 224
ScrFI CCNGG 1 cut(s) 392
SduI GDGCHC 1 cut(s) 84
SetI ASST 7 cut(s) 84, 215, 229, 270, 324, 467, 511
SfaNI GCATC 2 cut(s) 109, 469
SpeI ACTAGT 1 cut(s) 401
Sse9I AATT 2 cut(s) 236, 474
SsiI CCGC 1 cut(s) 93
SspMI CTAG 2 cut(s) 65, 402
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 390
StyI CCWWGG 1 cut(s) 469
TasI AATT 2 cut(s) 236, 474
TfiI GAWTC 4 cut(s) 56, 245, 381, 487
TscAI CASTG 2 cut(s) 112, 489
TseFI GTSAC 1 cut(s) 430
Tsp45I GTSAC 1 cut(s) 430
TspDTI ATGAA 3 cut(s) 88, 208, 268
TspRI CASTG 2 cut(s) 112, 489
XspI CTAG 2 cut(s) 65, 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.