Rroxscaffold_1G00063520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0018394
Physical Location & Seq
Forward (+)
85380691 .. 85381734
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00063520.1

Sequence Viewer

Length: 1044 bp
ATGGAGGATACTGCAGGAAGACGAAAATGGGCCAAGTTAGAGGTGGACTGCTTAACCAATGTGTTTGGAAGACTAGGAATGGAGTCACTGCTTTTGAATGTGCCTTTTGTCTGCAAATCATGGCACAAAGCAACCCAGGATCCTCTGTGCTGGCAAAACCTCTCATTCCCAGAGTTTTTACCACTACTCGAACCCAAGAGTCTCGGCCCGGAGCCATTTTACTACAAGTTTGTTGATAAATGTCAAGTCAAGAAGAACACTACTTTCTCCATCAGTGCTTTTGTAAGGATGGTAGTGGCTCGTAGCCACGGAAAGGCCATCGAGATCAAACTCCCTAGCTTTATAACTGAAGAAACCTTGAGGTACGTTTCGGATGCATGTCCCGGGATTAGGGTTTTGTGCATGCCAGATGATATAGTCATTTTTAAGCATTCTAGGCTTATTGCGAAATTGATTGGCAAGTGGAAGATGTTGGAGCAATTGCATTTGGGCGGCAACCTCAAGAAGATTGTCACACTTCGAGCACAATTGGATAAGCAAAGGACAAATGATTTGTTTGCAATGGGAGATTATTGTTCGTGTGAAACCATATTGGACGAGATCGTGATGCAGATTGGCATTCACTGCAATCATTTTGTGGGTCTCAGAATTGCTCATGCTTATGTTGATGAAGTAGAGGCATCGATTATTGTGGAATCGTTGCCGAATCTCAAGTACTTGTGGGTTGAAGAGTCTCACTTTGAAGGGGACAGTCTTGTCACGCTAGTGCGGGGCTGCAAACAACTTGAGGTTTTGGATGTCACTGACTGTGGAGAACTTGAAGACAGTGATGGTGATATGAAGGAAATAGCAAACCTTGCTAAGGGCTATGGTATTGAATTTCTATGGCAAGGTGGACGTGAAGATGCTGATTATTGTGGTCTTGATTTTCAGATCCGGTCGAGGAAGTTGCTTTTAACCAAGGTTCGTGTGAGACAATGTCCACGGATGAGCACCGGTGGAATGGCACCATCGAGGCTCCTAGCTCATAGAAATTCCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

347

Amino Acids

39.46

Weight (kDa)

7.08

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018394)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06260
rosa_chinensis RchiOBHm_Chr5g0013061
rosa_laevigata RLG00000031981
rosa_multiflora Rmu_sc0003892.1_g000016
rosa_roxburghii Rroxscaffold_1G00063520
rosa_rugosa Rorug05G0006900
rosa_samantha Rh5BG097500 Rh5CG109600 Rh5DG096500
rosa_wichuraiana Rw5G008820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AasI GACNNNNNNGTC 1 cut(s) 755
AccB1I GGYRCC 1 cut(s) 1006
AciI CCGC 2 cut(s) 492, 769
AclWI GGATC 3 cut(s) 134, 147, 928
AcsI RAATTY 2 cut(s) 878, 1033
AcuI CTGAAG 1 cut(s) 369
AfaI GTAC 2 cut(s) 365, 716
AfiI CCNNNNNNNGG 3 cut(s) 313, 390, 862
AgeI ACCGGT 1 cut(s) 995
AgsI TTSAA 5 cut(s) 97, 728, 743, 821, 878
AjiI CACGTC 1 cut(s) 899
AjnI CCWGG 1 cut(s) 135
AleI CACNNNNGTG 1 cut(s) 764
AluBI AGCT 2 cut(s) 339, 1025
AluI AGCT 2 cut(s) 339, 1025
Alw21I GWGCWC 2 cut(s) 526, 995
Alw26I GTCTC 4 cut(s) 206, 647, 738, 967
AlwI GGATC 3 cut(s) 134, 147, 928
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 3 cut(s) 30, 205, 315
ApeKI GCWGC 1 cut(s) 774
ApoI RAATTY 2 cut(s) 878, 1033
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AsiGI ACCGGT 1 cut(s) 995
AspS9I GGNCC 2 cut(s) 30, 206
AsuC2I CCSGG 4 cut(s) 209, 384, 385, 1039
AsuHPI GGTGA 1 cut(s) 845
AvaI CYCGRG 1 cut(s) 383
BamHI GGATCC 1 cut(s) 139
BanI GGYRCC 1 cut(s) 1006
BbsI GAAGAC 3 cut(s) 25, 76, 828
Bbv12I GWGCWC 2 cut(s) 526, 995
BbvI GCAGC 1 cut(s) 761
BccI CCATC 5 cut(s) 278, 283, 326, 824, 1018
BcgI CGANNNNNNTGC 2 cut(s) 931, 965
BciT130I CCWGG 1 cut(s) 137
BcnI CCSGG 4 cut(s) 209, 384, 385, 1039
BcoDI GTCTC 4 cut(s) 206, 647, 738, 967
BfaI CTAG 5 cut(s) 74, 336, 435, 764, 1022
BfmI CTRYAG 1 cut(s) 12
BisI GCNGC 2 cut(s) 493, 775
BlsI GCNGC 2 cut(s) 494, 776
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 5 cut(s) 137, 209, 384, 385, 1039
BmeT110I CYCGRG 1 cut(s) 383
BmgBI CACGTC 1 cut(s) 899
BmgT120I GGNCC 2 cut(s) 30, 206
BmiI GGNNCC 4 cut(s) 141, 213, 1008, 1019
BmrFI CCNGG 5 cut(s) 137, 209, 384, 385, 1039
BmsI GCATC 4 cut(s) 364, 597, 689, 895
BpiI GAAGAC 3 cut(s) 25, 76, 828
Bpu10I CCTNAGC 1 cut(s) 861
BpuEI CTTGAG 4 cut(s) 379, 485, 695, 806
BpuMI CCSGG 4 cut(s) 209, 384, 385, 1039
Bsa29I ATCGAT 1 cut(s) 683
BsaI GGTCTC 1 cut(s) 647
BsaJI CCNNGG 5 cut(s) 135, 307, 383, 960, 983
BsaWI WCCGGW 2 cut(s) 936, 995
Bsc4I CCNNNNNNNGG 3 cut(s) 313, 390, 862
Bse118I RCCGGY 1 cut(s) 995
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 137
BseCI ATCGAT 1 cut(s) 683
BseDI CCNNGG 5 cut(s) 135, 307, 383, 960, 983
BseGI GGATG 4 cut(s) 294, 379, 802, 993
BseLI CCNNNNNNNGG 3 cut(s) 313, 390, 862
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 1 cut(s) 658
BseXI GCAGC 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 941
BshFI GGCC 3 cut(s) 32, 207, 317
BshNI GGYRCC 1 cut(s) 1006
BshTI ACCGGT 1 cut(s) 995
BshVI ATCGAT 1 cut(s) 683
BsiEI CGRYCG 1 cut(s) 941
BsiHKAI GWGCWC 2 cut(s) 526, 995
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 5 cut(s) 209, 384, 937, 996, 1039
BslFI GGGAC 2 cut(s) 366, 761
BslI CCNNNNNNNGG 3 cut(s) 313, 390, 862
BsmAI GTCTC 4 cut(s) 206, 647, 738, 967
BsmFI GGGAC 2 cut(s) 366, 761
BsmI GAATGC 2 cut(s) 430, 618
BsnI GGCC 3 cut(s) 32, 207, 317
Bso31I GGTCTC 1 cut(s) 647
BsoBI CYCGRG 1 cut(s) 383
Bsp1286I GDGCHC 2 cut(s) 526, 995
Bsp143I GATC 4 cut(s) 139, 324, 600, 933
BspACI CCGC 2 cut(s) 492, 769
BspANI GGCC 3 cut(s) 32, 207, 317
BspCNI CTCAG 1 cut(s) 657
BspDI ATCGAT 1 cut(s) 683
BspLI GGNNCC 4 cut(s) 141, 213, 1008, 1019
BspMAI CTGCAG 1 cut(s) 16
BspPI GGATC 3 cut(s) 134, 147, 928
BspT107I GGYRCC 1 cut(s) 1006
BspTNI GGTCTC 1 cut(s) 647
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 1 cut(s) 995
BssAI RCCGGY 1 cut(s) 995
BssECI CCNNGG 5 cut(s) 135, 307, 383, 960, 983
BssMI GATC 4 cut(s) 139, 324, 600, 933
BssT1I CCWWGG 1 cut(s) 960
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 3 cut(s) 752, 809, 827
Bst6I CTCTTC 1 cut(s) 723
BstAPI GCANNNNNTGC 2 cut(s) 624, 857
BstC8I GCNNGC 2 cut(s) 152, 404
BstDEI CTNAG 2 cut(s) 644, 861
BstDSI CCRYGG 2 cut(s) 307, 983
BstENI CCTNNNNNAGG 1 cut(s) 860
BstF5I GGATG 4 cut(s) 294, 379, 802, 993
BstKTI GATC 4 cut(s) 142, 327, 603, 936
BstMAI GTCTC 4 cut(s) 206, 647, 738, 967
BstMBI GATC 4 cut(s) 139, 324, 600, 933
BstMCI CGRYCG 1 cut(s) 941
BstMWI GCNNNNNNNGC 3 cut(s) 436, 624, 857
BstNI CCWGG 1 cut(s) 137
BstNSI RCATGY 2 cut(s) 381, 406
BstSCI CCNGG 5 cut(s) 135, 207, 382, 383, 1037
BstSFI CTRYAG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 761
BstV2I GAAGAC 3 cut(s) 25, 76, 828
BstX2I RGATCY 2 cut(s) 139, 933
BstYI RGATCY 2 cut(s) 139, 933
Bsu15I ATCGAT 1 cut(s) 683
BsuRI GGCC 3 cut(s) 32, 207, 317
BsuTUI ATCGAT 1 cut(s) 683
BtgI CCRYGG 2 cut(s) 307, 983
BtrI CACGTC 1 cut(s) 899
BtsCI GGATG 4 cut(s) 294, 379, 802, 993
BtsI GCAGTG 2 cut(s) 86, 622
BtsIMutI CAGTG 5 cut(s) 86, 280, 622, 801, 832
Cac8I GCNNGC 2 cut(s) 152, 404
Cfr10I RCCGGY 1 cut(s) 995
Cfr13I GGNCC 2 cut(s) 30, 206
Cfr9I CCCGGG 1 cut(s) 383
ClaI ATCGAT 1 cut(s) 683
Csp6I GTAC 2 cut(s) 364, 715
CspAI ACCGGT 1 cut(s) 995
CviAII CATG 4 cut(s) 120, 378, 403, 656
CviQI GTAC 2 cut(s) 364, 715
DdeI CTNAG 2 cut(s) 644, 861
DpnI GATC 4 cut(s) 141, 326, 602, 935
DpnII GATC 4 cut(s) 139, 324, 600, 933
DrdI GACNNNNNNGTC 1 cut(s) 755
DseDI GACNNNNNNGTC 1 cut(s) 755
Eam1104I CTCTTC 1 cut(s) 723
EarI CTCTTC 1 cut(s) 723
Eco130I CCWWGG 1 cut(s) 960
Eco31I GGTCTC 1 cut(s) 647
Eco57I CTGAAG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 383
EcoNI CCTNNNNNAGG 1 cut(s) 860
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 960
EcoT22I ATGCAT 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 960
FaeI CATG 4 cut(s) 123, 381, 406, 659
FaqI GGGAC 2 cut(s) 366, 761
FatI CATG 4 cut(s) 119, 377, 402, 655
FauI CCCGC 1 cut(s) 762
Fnu4HI GCNGC 2 cut(s) 493, 775
FokI GGATG 4 cut(s) 301, 386, 809, 1000
Fsp4HI GCNGC 2 cut(s) 493, 775
FspBI CTAG 5 cut(s) 74, 336, 435, 764, 1022
GluI GCNGC 2 cut(s) 493, 775
HaeIII GGCC 3 cut(s) 32, 207, 317
HapII CCGG 5 cut(s) 209, 384, 937, 996, 1039
Hin1II CATG 4 cut(s) 123, 381, 406, 659
HinfI GANTC 5 cut(s) 83, 199, 695, 706, 731
HpaII CCGG 5 cut(s) 209, 384, 937, 996, 1039
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 3 cut(s) 46, 896, 983
Hpy188I TCNGA 3 cut(s) 373, 647, 933
Hpy188III TCNNGA 5 cut(s) 250, 322, 502, 604, 923
Hpy8I GTNNAC 3 cut(s) 46, 896, 983
HpyAV CCTTC 2 cut(s) 737, 835
HpyCH4III ACNGT 3 cut(s) 752, 809, 827
HpyCH4IV ACGT 2 cut(s) 366, 898
HpyCH4V TGCA 9 cut(s) 14, 114, 377, 402, 484, 560, 610, 627, 777
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 624, 857
HpyF3I CTNAG 2 cut(s) 644, 861
HpySE526I ACGT 2 cut(s) 366, 898
Hsp92II CATG 4 cut(s) 123, 381, 406, 659
Kzo9I GATC 4 cut(s) 139, 324, 600, 933
LmnI GCTCC 3 cut(s) 211, 475, 1023
LpnPI CCDG 9 cut(s) 122, 136, 149, 183, 222, 397, 420, 950, 1009
Lsp1109I GCAGC 1 cut(s) 761
LweI GCATC 4 cut(s) 364, 597, 689, 895
MaeI CTAG 5 cut(s) 74, 336, 435, 764, 1022
MaeII ACGT 2 cut(s) 366, 898
MaeIII GTNAC 4 cut(s) 84, 511, 757, 799
MalI GATC 4 cut(s) 141, 326, 602, 935
MboI GATC 4 cut(s) 139, 324, 600, 933
MboII GAAGA 9 cut(s) 30, 81, 265, 362, 478, 517, 740, 833, 914
MfeI CAATTG 2 cut(s) 479, 527
MflI RGATCY 2 cut(s) 139, 933
MhlI GDGCHC 2 cut(s) 526, 995
MluCI AATT 6 cut(s) 449, 479, 527, 648, 878, 1033
MlyI GAGTC 3 cut(s) 92, 208, 740
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 9 cut(s) 34, 153, 170, 354, 509, 670, 781, 936, 1008
Mph1103I ATGCAT 1 cut(s) 379
MseI TTAA 3 cut(s) 53, 426, 956
MslI CAYNNNNRTG 2 cut(s) 660, 764
MspI CCGG 5 cut(s) 209, 384, 937, 996, 1039
MspR9I CCNGG 5 cut(s) 137, 209, 384, 385, 1039
MunI CAATTG 2 cut(s) 479, 527
Mva1269I GAATGC 2 cut(s) 430, 618
MvaI CCWGG 1 cut(s) 137
MwoI GCNNNNNNNGC 3 cut(s) 436, 624, 857
NciI CCSGG 4 cut(s) 209, 384, 385, 1039
NdeII GATC 4 cut(s) 139, 324, 600, 933
NlaIII CATG 4 cut(s) 123, 381, 406, 659
NlaIV GGNNCC 4 cut(s) 141, 213, 1008, 1019
NmeAIII GCCGAG 1 cut(s) 183
NmuCI GTSAC 4 cut(s) 84, 511, 757, 799
NsiI ATGCAT 1 cut(s) 379
NspI RCATGY 2 cut(s) 381, 406
OliI CACNNNNGTG 1 cut(s) 764
PaeI GCATGC 1 cut(s) 406
PctI GAATGC 2 cut(s) 430, 618
PfeI GAWTC 2 cut(s) 695, 706
PflFI GACNNNGTC 1 cut(s) 978
PinAI ACCGGT 1 cut(s) 995
PkrI GCNGC 2 cut(s) 494, 776
PleI GAGTC 3 cut(s) 91, 207, 739
PpsI GAGTC 3 cut(s) 91, 207, 739
PsiI TTATAA 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 141, 213, 1008, 1019
PspPI GGNCC 2 cut(s) 30, 206
PstI CTGCAG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 139, 933
PsyI GACNNNGTC 1 cut(s) 978
RsaI GTAC 2 cut(s) 365, 716
RsaNI GTAC 2 cut(s) 364, 715
RseI CAYNNNNRTG 2 cut(s) 660, 764
SaqAI TTAA 3 cut(s) 53, 426, 956
SatI GCNGC 2 cut(s) 493, 775
Sau3AI GATC 4 cut(s) 139, 324, 600, 933
Sau96I GGNCC 2 cut(s) 30, 206
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 3 cut(s) 92, 208, 740
ScrFI CCNGG 5 cut(s) 137, 209, 384, 385, 1039
SduI GDGCHC 2 cut(s) 526, 995
SfaNI GCATC 4 cut(s) 364, 597, 689, 895
SfcI CTRYAG 1 cut(s) 12
SgrAI CRCCGGYG 1 cut(s) 995
SmaI CCCGGG 1 cut(s) 385
SmiMI CAYNNNNRTG 2 cut(s) 660, 764
SmlI CTYRAG 4 cut(s) 358, 500, 710, 785
SmoI CTYRAG 4 cut(s) 358, 500, 710, 785
SphI GCATGC 1 cut(s) 406
Sse9I AATT 6 cut(s) 449, 479, 527, 648, 878, 1033
SsiI CCGC 2 cut(s) 492, 769
SspMI CTAG 5 cut(s) 74, 336, 435, 764, 1022
StyD4I CCNGG 5 cut(s) 135, 207, 382, 383, 1037
StyI CCWWGG 1 cut(s) 960
TaaI ACNGT 3 cut(s) 752, 809, 827
TaiI ACGT 2 cut(s) 369, 901
TaqI TCGA 6 cut(s) 189, 321, 520, 683, 941, 1013
TasI AATT 6 cut(s) 449, 479, 527, 648, 878, 1033
TatI WGTACW 1 cut(s) 714
TauI GCSGC 1 cut(s) 495
TfiI GAWTC 2 cut(s) 695, 706
Tru1I TTAA 3 cut(s) 53, 426, 956
Tru9I TTAA 3 cut(s) 53, 426, 956
TscAI CASTG 5 cut(s) 93, 280, 629, 808, 832
TseFI GTSAC 4 cut(s) 84, 511, 757, 799
TseI GCWGC 1 cut(s) 774
Tsp45I GTSAC 4 cut(s) 84, 511, 757, 799
TspDTI ATGAA 2 cut(s) 684, 854
TspGWI ACGGA 2 cut(s) 324, 1000
TspMI CCCGGG 1 cut(s) 383
TspRI CASTG 5 cut(s) 93, 280, 629, 808, 832
Tth111I GACNNNGTC 1 cut(s) 978
XagI CCTNNNNNAGG 1 cut(s) 860
XapI RAATTY 2 cut(s) 878, 1033
XceI RCATGY 2 cut(s) 381, 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 40
XmaI CCCGGG 1 cut(s) 383
XspI CTAG 5 cut(s) 74, 336, 435, 764, 1022
ZrmI AGTACT 1 cut(s) 716
Zsp2I ATGCAT 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.