FvH4_3g08730

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0022181
Physical Location & Seq
Forward (+)
5097816 .. 5098673
858 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g08730.t1

Sequence Viewer

Length: 858 bp
ATGTTCAATCAGATGCTCAGAGATGGTATTTGCCCCAATCATATTACTTTAGTCAGTGTCCTCTGTGCTTGCAATCATGCAGGTTTAGTAACTGAAGCCACAATATATTTTGAGTCAATGAAAGAGTTGTTTGGAGTTGTGCCAAGGGAGGAGCATTATGCCTGCATGATTGATCTTCTTGGCAGAGCAGGAAAGATAAAGGAGGCAATGGAGCTTGTCAACACTATGCCATTTCAAGCCAACGCCTCAGTTTGGGGGTCACTTCTTGGTGCTGCAAGAATCCATAAAAATGTTGAGCTTGGTGAACGTGCTGCTGATATGCTCTTTGTTCTGGAACCTGAGAAATCAGGTACCCATGTACTTCTTGCAAACATATATGCAGCAGTGGGCATGTGGGACAAGGTAGCAAAAATGAGAAGACTTATGAAACATAACCAGGTAAAGAAGGAACCTGGGATGAGTTGGATTGAGGTCCAAGACAAGGTACACACCTTTATTGTAGGTGACAGAAATCATTGGAGAAGCAAGGAAATATATGCAAAACTTGATGAGCTGCTTGACAGTATGCATAAAGCCGGCTATGTTCCGATGGTGGAGATTGACCTCCATGATGTGGAACAAAGCGAAAAGGAGCAGCTGCTACGATGTCACAGTGAGAAGCTTGCAGTGGCTTTCGCATTGATTGCCACTCCGCCAGGAGCTCTGATTAGAGTGAAGAAGAATTTAAGAGTGTGTATAGATTGCCATACTGCATTCAAGTTCATCTGTAAAATCGTCTCGAGGGAGATAATCGTAAGGGATGTCAATAGATTTCATCATTTCAAAGATGGCTCATGCTCTTGTGGGGATTACTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

286

Amino Acids

32.38

Weight (kDa)

7.63

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
E_motif PF20431 95 - 157 2.6e-21 E motif
Eplus_motif PF20430 162 - 189 3.9e-09 E+ motif
DYW_deaminase PF14432 193 - 285 1.3e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022181)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g08730
malus_domestica MD05G1311200.v1.1
pyrus_communis pycom14g06810
rosa_multiflora Rmu_sc0025557.1_g000003

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 71
Acc65I GGTACC 1 cut(s) 350
AccB1I GGYRCC 1 cut(s) 350
AccB7I CCANNNNNTGG 1 cut(s) 613
AciI CCGC 1 cut(s) 692
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 3 cut(s) 352, 360, 486
AfiI CCNNNNNNNGG 3 cut(s) 252, 481, 613
AgsI TTSAA 4 cut(s) 7, 236, 757, 823
AjnI CCWGG 3 cut(s) 435, 451, 694
AluBI AGCT 6 cut(s) 214, 298, 553, 637, 661, 701
AluI AGCT 6 cut(s) 214, 298, 553, 637, 661, 701
Alw21I GWGCWC 1 cut(s) 703
Alw26I GTCTC 1 cut(s) 781
Ama87I CYCGRG 1 cut(s) 778
ApeKI GCWGC 6 cut(s) 272, 311, 380, 553, 634, 637
ApoI RAATTY 1 cut(s) 721
Asp718I GGTACC 1 cut(s) 350
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 2 cut(s) 314, 515
AvaI CYCGRG 1 cut(s) 778
AvaII GGWCC 1 cut(s) 472
BaeI ACNNNNGTAYC 2 cut(s) 342, 375
BanI GGYRCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 703
BbsI GAAGAC 1 cut(s) 424
Bbv12I GWGCWC 1 cut(s) 703
BbvI GCAGC 6 cut(s) 259, 298, 392, 540, 624, 646
BccI CCATC 3 cut(s) 17, 583, 821
BciT130I CCWGG 3 cut(s) 437, 453, 696
BcoDI GTCTC 1 cut(s) 781
BfuAI ACCTGC 1 cut(s) 71
BisI GCNGC 6 cut(s) 273, 312, 381, 554, 635, 638
BlsI GCNGC 6 cut(s) 274, 313, 382, 555, 636, 639
Bme1390I CCNGG 3 cut(s) 437, 453, 696
Bme18I GGWCC 1 cut(s) 472
BmeT110I CYCGRG 1 cut(s) 778
BmgT120I GGNCC 1 cut(s) 472
BmiI GGNNCC 3 cut(s) 336, 352, 450
BmrFI CCNGG 3 cut(s) 437, 453, 696
BmsI GCATC 1 cut(s) 3
BpiI GAAGAC 1 cut(s) 424
BsaJI CCNNGG 2 cut(s) 143, 452
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 481, 613
Bse118I RCCGGY 1 cut(s) 575
Bse1I ACTGG 1 cut(s) 857
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 3 cut(s) 437, 453, 696
BseDI CCNNGG 2 cut(s) 143, 452
BseGI GGATG 2 cut(s) 462, 805
BseLI CCNNNNNNNGG 3 cut(s) 252, 481, 613
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 3 cut(s) 31, 261, 330
BseNI ACTGG 1 cut(s) 857
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 6 cut(s) 259, 298, 392, 540, 624, 646
BshNI GGYRCC 1 cut(s) 350
BsiHKAI GWGCWC 1 cut(s) 703
BsiHKCI CYCGRG 1 cut(s) 778
BsiSI CCGG 1 cut(s) 576
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 3 cut(s) 252, 481, 613
BsmAI GTCTC 1 cut(s) 781
BsmBI CGTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 752
BsoBI CYCGRG 1 cut(s) 778
Bsp1286I GDGCHC 1 cut(s) 703
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 1 cut(s) 692
BspCNI CTCAG 3 cut(s) 30, 260, 331
BspLI GGNNCC 3 cut(s) 336, 352, 450
BspMI ACCTGC 1 cut(s) 71
BspT107I GGYRCC 1 cut(s) 350
BsrDI GCAATG 1 cut(s) 213
BsrFI RCCGGY 1 cut(s) 575
BsrI ACTGG 1 cut(s) 857
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 2 cut(s) 143, 452
BssMI GATC 1 cut(s) 172
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 3 cut(s) 437, 453, 696
Bst4CI ACNGT 2 cut(s) 563, 653
BstAPI GCANNNNNTGC 1 cut(s) 683
BstC8I GCNNGC 4 cut(s) 70, 163, 577, 663
BstDEI CTNAG 3 cut(s) 17, 247, 339
BstF5I GGATG 2 cut(s) 462, 805
BstKTI GATC 1 cut(s) 175
BstMAI GTCTC 1 cut(s) 781
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNI CCWGG 3 cut(s) 437, 453, 696
BstNSI RCATGY 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 435, 451, 694
BstV1I GCAGC 6 cut(s) 259, 298, 392, 540, 624, 646
BstV2I GAAGAC 1 cut(s) 424
BtsCI GGATG 2 cut(s) 462, 805
BtsI GCAGTG 2 cut(s) 390, 672
BtsIMutI CAGTG 4 cut(s) 61, 390, 658, 672
BveI ACCTGC 1 cut(s) 71
Cac8I GCNNGC 4 cut(s) 70, 163, 577, 663
Cfr10I RCCGGY 1 cut(s) 575
Cfr13I GGNCC 1 cut(s) 472
CsiI ACCWGGT 1 cut(s) 435
Csp6I GTAC 3 cut(s) 351, 359, 485
CviAII CATG 6 cut(s) 77, 166, 356, 391, 608, 834
CviQI GTAC 3 cut(s) 351, 359, 485
DdeI CTNAG 3 cut(s) 17, 247, 339
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
EciI GGCGGA 1 cut(s) 681
Ecl136II GAGCTC 1 cut(s) 701
Eco130I CCWWGG 1 cut(s) 143
Eco24I GRGCYC 1 cut(s) 703
Eco47I GGWCC 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 701
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 778
EcoICRI GAGCTC 1 cut(s) 701
EcoRII CCWGG 3 cut(s) 435, 451, 694
EcoT14I CCWWGG 1 cut(s) 143
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 781
FaeI CATG 6 cut(s) 80, 169, 359, 394, 611, 837
FaqI GGGAC 1 cut(s) 410
FatI CATG 6 cut(s) 76, 165, 355, 390, 607, 833
Fnu4HI GCNGC 6 cut(s) 273, 312, 381, 554, 635, 638
FokI GGATG 2 cut(s) 469, 812
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 6 cut(s) 273, 312, 381, 554, 635, 638
GluI GCNGC 6 cut(s) 273, 312, 381, 554, 635, 638
HapII CCGG 1 cut(s) 576
Hin1II CATG 6 cut(s) 80, 169, 359, 394, 611, 837
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 659
HinfI GANTC 2 cut(s) 113, 279
HpaII CCGG 1 cut(s) 576
HphI GGTGA 2 cut(s) 314, 515
Hpy166II GTNNAC 3 cut(s) 220, 305, 487
Hpy188I TCNGA 4 cut(s) 12, 20, 588, 705
Hpy188III TCNNGA 2 cut(s) 332, 778
Hpy8I GTNNAC 3 cut(s) 220, 305, 487
HpyAV CCTTC 1 cut(s) 439
HpyCH4III ACNGT 2 cut(s) 563, 653
HpyCH4IV ACGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 3 cut(s) 17, 247, 339
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 6 cut(s) 80, 169, 359, 394, 611, 837
KpnI GGTACC 1 cut(s) 354
KroI GCCGGC 1 cut(s) 575
KroNI GCCGGC 1 cut(s) 577
Kzo9I GATC 1 cut(s) 172
LmnI GCTCC 4 cut(s) 151, 211, 631, 698
Lsp1109I GCAGC 6 cut(s) 259, 298, 392, 540, 624, 646
LweI GCATC 1 cut(s) 3
MabI ACCWGGT 1 cut(s) 435
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 4 cut(s) 88, 258, 503, 647
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 4 cut(s) 167, 429, 727, 730
MhlI GDGCHC 1 cut(s) 703
MluCI AATT 1 cut(s) 721
MlyI GAGTC 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 443
MnlI CCTC 7 cut(s) 71, 142, 196, 256, 463, 614, 774
Mph1103I ATGCAT 1 cut(s) 570
MroNI GCCGGC 1 cut(s) 575
MseI TTAA 1 cut(s) 725
MslI CAYNNNNRTG 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 637
MspI CCGG 1 cut(s) 576
MspR9I CCNGG 3 cut(s) 437, 453, 696
Mva1269I GAATGC 1 cut(s) 752
MvaI CCWGG 3 cut(s) 437, 453, 696
MwoI GCNNNNNNNGC 1 cut(s) 683
NaeI GCCGGC 1 cut(s) 577
NdeII GATC 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 575
NlaIII CATG 6 cut(s) 80, 169, 359, 394, 611, 837
NlaIV GGNNCC 3 cut(s) 336, 352, 450
NmuCI GTSAC 3 cut(s) 258, 503, 647
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 1 cut(s) 394
PaeR7I CTCGAG 1 cut(s) 778
PctI GAATGC 1 cut(s) 752
PdiI GCCGGC 1 cut(s) 577
PfeI GAWTC 1 cut(s) 279
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 6 cut(s) 274, 313, 382, 555, 636, 639
PleI GAGTC 1 cut(s) 121
PpsI GAGTC 1 cut(s) 121
Psp124BI GAGCTC 1 cut(s) 703
Psp6I CCWGG 3 cut(s) 435, 451, 694
PspGI CCWGG 3 cut(s) 435, 451, 694
PspN4I GGNNCC 3 cut(s) 336, 352, 450
PspPI GGNCC 1 cut(s) 472
PvuII CAGCTG 1 cut(s) 637
RsaI GTAC 3 cut(s) 352, 360, 486
RsaNI GTAC 3 cut(s) 351, 359, 485
RseI CAYNNNNRTG 1 cut(s) 288
SacI GAGCTC 1 cut(s) 703
SaqAI TTAA 1 cut(s) 725
SatI GCNGC 6 cut(s) 273, 312, 381, 554, 635, 638
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 1 cut(s) 122
ScrFI CCNGG 3 cut(s) 437, 453, 696
SduI GDGCHC 1 cut(s) 703
SexAI ACCWGGT 1 cut(s) 435
SfaNI GCATC 1 cut(s) 3
Sfr274I CTCGAG 1 cut(s) 778
SinI GGWCC 1 cut(s) 472
SlaI CTCGAG 1 cut(s) 778
SmiMI CAYNNNNRTG 1 cut(s) 288
SmlI CTYRAG 1 cut(s) 778
SmoI CTYRAG 1 cut(s) 778
Sse9I AATT 1 cut(s) 721
SsiI CCGC 1 cut(s) 692
SstI GAGCTC 1 cut(s) 703
StyD4I CCNGG 3 cut(s) 435, 451, 694
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 563, 653
TaiI ACGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 779
TasI AATT 1 cut(s) 721
TatI WGTACW 1 cut(s) 358
TfiI GAWTC 1 cut(s) 279
Tru1I TTAA 1 cut(s) 725
Tru9I TTAA 1 cut(s) 725
TscAI CASTG 4 cut(s) 61, 390, 658, 672
TseFI GTSAC 3 cut(s) 258, 503, 647
TseI GCWGC 6 cut(s) 272, 311, 380, 553, 634, 637
Tsp45I GTSAC 3 cut(s) 258, 503, 647
TspDTI ATGAA 4 cut(s) 134, 440, 751, 803
TspRI CASTG 4 cut(s) 61, 390, 658, 672
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 1 cut(s) 472
XapI RAATTY 1 cut(s) 721
XceI RCATGY 1 cut(s) 394
XhoI CTCGAG 1 cut(s) 778
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.