Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0020820

Physical Location & Seq

Genomic Coordinates Forward (+)

5465198 .. 5467127

Gene Structure 1930 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g09360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGGCTCTACAGAACATTGGTGCTTCCAACCGTAATGATCCCTTCTATAGGTATAAGATGCCAAGCATGATCACTAAGATTGAAGGAAGAGGAAATGGCATCAAGACTAATGTGGTTAACATGGTGGATATCGCAGATAAGTTGGCCAGACCTCCTTATATCACCAAGTATTTTGGTTGTGAGCTTGGAGCACAGTCAAAGTTCGACGACAAGAACAAAACGTGTTATGTGAATGGTGCTCATGACACTGCAAAGCTTGCTGGACTTCTGGAGAACTTCATTGAGAAATATGTGCAGTGCTACCGTTGTGGGAACCCTGAGACTGAGATTATTATCACCAAGAAACAGACGTCGAATCTCAAATGTGCCGCGTGTGGGCATGTGTCTGATATTAACATGAGGGACAAGCTTACGAATTTTATCCTCAAGAATCCTCCAGAGCAGAAGAAGTCTGCCAAAGAGAAGAAAGCTTTGAGGAGGGTAGACAAAGAGCAGCTCAAGGAAGGTGAAGCTGCTGAGGAGGAGCAAAAGAAGCTTAAGAAAGAGGCAGCAGAAAAGAAAGGCACTTCTGGCTCCACAGTATCTAGCAAGAAGAAAACCGCCGGTTGTGACGAGGATCACTCCCCTACTCGGAGCCAAGGAGATGTGATTGACCAAGCAGCTGAAGAGGATGATGGCGGCCAGTGGCAGACAGACACTTCCATAGAGGCAGCCAAGAAGCGAATCGAGGAGCAGTTGAGTGCTATATCTGTGGAGATGAATCAGAATGGTGTGTGGAAACGAAGTTCTAGCTCAATTGAGAACACTTTTGAAAGTAGCATCATGAAAAGCCTTGATAAAATTGCCATGAGTCTTGAAGGAATCTGTAATCTACTAGAGAAAAGAGAAATGAGGAGACAATATACAGTTTGGGATGCAATCAAGGAGATCCCAAACTTGGACTTGGTTGCTCGTTTCAAGGTGCTTGAGTTGATTGATACCAAAGTAAAAGAAGAGGTGTTCTTGCAGATGTCCCTTGAAGAACGATTAAGATGGATATCCTACAAGATGAACCCGGAAAATCTACAAGGTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko03013 ko04214 map03013 map04214

Pfam Domains

Protein Families

W2 eIF-5_eIF-2B

Protein Analysis

359

Amino Acids

40.51

Weight (kDa)

8.43

Isoelectric Point (pI)

48.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF-5_eIF-2B	PF01873	11 - 127	7e-34	Domain found in IF2B/IF5
At2g29880_C	PF24769	303 - 349	1.5e-21	At2g29880 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020820)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18412 FvH4_3g09360 FvH4_4g09542
rosa_samantha	Rh5AG062900 Rh5CG069800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	483
AccII	CGCG	1 cut(s)	371
AciI	CCGC	3 cut(s)	369, 600, 678
AclWI	GGATC	3 cut(s)	32, 624, 922
AcoI	YGGCCR	2 cut(s)	144, 679
AcsI	RAATTY	1 cut(s)	415
AcuI	CTGAAG	1 cut(s)	684
AcyI	GRCGYC	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	48, 375, 630, 937
AflII	CTTAAG	1 cut(s)	536
AflIII	ACRYGT	1 cut(s)	221
AgsI	TTSAA	5 cut(s)	83, 812, 857, 958, 1019
AloI	GAACNNNNNNTCC	2 cut(s)	769, 801
AluBI	AGCT	9 cut(s)	184, 256, 409, 470, 496, 512, 535, 662, 792
AluI	AGCT	9 cut(s)	184, 256, 409, 470, 496, 512, 535, 662, 792
Alw21I	GWGCWC	2 cut(s)	193, 241
Alw26I	GTCTC	2 cut(s)	314, 889
AlwI	GGATC	3 cut(s)	32, 624, 922
AoxI	GGCC	2 cut(s)	144, 679
ApeKI	GCWGC	5 cut(s)	493, 512, 548, 659, 710
ApoI	RAATTY	1 cut(s)	415
AsuC2I	CCSGG	1 cut(s)	1055
AsuHPI	GGTGA	3 cut(s)	154, 328, 518
BaeI	ACNNNNGTAYC	2 cut(s)	969, 1002
BalI	TGGCCA	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	193, 241
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	5 cut(s)	499, 505, 560, 671, 722
BccI	CCATC	2 cut(s)	668, 1026
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	1055
BcoDI	GTCTC	2 cut(s)	314, 889
BfaI	CTAG	4 cut(s)	585, 789, 875, 1075
BfmI	CTRYAG	2 cut(s)	8, 46
BfrI	CTTAAG	1 cut(s)	536
BisI	GCNGC	7 cut(s)	369, 494, 513, 549, 660, 679, 711
BlsI	GCNGC	7 cut(s)	370, 495, 514, 550, 661, 680, 712
Bme1390I	CCNGG	1 cut(s)	1055
BmiI	GGNNCC	3 cut(s)	314, 574, 635
BmrFI	CCNGG	1 cut(s)	1055
BmsI	GCATC	4 cut(s)	48, 108, 828, 904
BplI	GAGNNNNNCTC	2 cut(s)	605, 637
BpmI	CTGGAG	2 cut(s)	290, 420
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	3 cut(s)	410, 482, 986
BpuMI	CCSGG	1 cut(s)	1055
BsaBI	GATNNNNATC	2 cut(s)	332, 1036
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	637
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 375, 630, 937
Bse118I	RCCGGY	1 cut(s)	602
Bse1I	ACTGG	1 cut(s)	682
Bse8I	GATNNNNATC	2 cut(s)	332, 1036
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	2 cut(s)	676, 919
BseJI	GATNNNNATC	2 cut(s)	332, 1036
BseLI	CCNNNNNNNGG	4 cut(s)	48, 375, 630, 937
BseMII	CTCAG	3 cut(s)	309, 315, 507
BseNI	ACTGG	1 cut(s)	682
BseRI	GAGGAG	5 cut(s)	490, 533, 536, 743, 907
BseXI	GCAGC	5 cut(s)	499, 505, 560, 671, 722
BsgI	GTGCAG	1 cut(s)	314
Bsh1236I	CGCG	1 cut(s)	371
BshFI	GGCC	2 cut(s)	146, 681
BsiHKAI	GWGCWC	2 cut(s)	193, 241
BsiSI	CCGG	2 cut(s)	603, 1055
BslFI	GGGAC	2 cut(s)	416, 997
BslI	CCNNNNNNNGG	4 cut(s)	48, 375, 630, 937
BsmAI	GTCTC	2 cut(s)	314, 889
BsmFI	GGGAC	2 cut(s)	416, 997
BsnI	GGCC	2 cut(s)	146, 681
Bsp1286I	GDGCHC	2 cut(s)	193, 241
Bsp143I	GATC	4 cut(s)	37, 69, 616, 927
BspACI	CCGC	3 cut(s)	369, 600, 678
BspANI	GGCC	2 cut(s)	146, 681
BspCNI	CTCAG	3 cut(s)	310, 316, 508
BspFNI	CGCG	1 cut(s)	371
BspHI	TCATGA	2 cut(s)	241, 822
BspLI	GGNNCC	3 cut(s)	314, 574, 635
BspPI	GGATC	3 cut(s)	32, 624, 922
BspTI	CTTAAG	1 cut(s)	536
BsrFI	RCCGGY	1 cut(s)	602
BsrI	ACTGG	1 cut(s)	682
BssAI	RCCGGY	1 cut(s)	602
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	4 cut(s)	37, 69, 616, 927
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	637
Bst4CI	ACNGT	5 cut(s)	32, 195, 305, 580, 907
Bst6I	CTCTTC	3 cut(s)	82, 660, 987
BstACI	GRCGYC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	536
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	4 cut(s)	75, 318, 324, 516
BstENI	CCTNNNNNAGG	1 cut(s)	46
BstF5I	GGATG	2 cut(s)	676, 919
BstFNI	CGCG	1 cut(s)	371
BstKTI	GATC	4 cut(s)	40, 72, 619, 930
BstMAI	GTCTC	2 cut(s)	314, 889
BstMBI	GATC	4 cut(s)	37, 69, 616, 927
BstMWI	GCNNNNNNNGC	3 cut(s)	257, 532, 570
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	1053
BstSFI	CTRYAG	2 cut(s)	8, 46
BstUI	CGCG	1 cut(s)	371
BstV1I	GCAGC	5 cut(s)	499, 505, 560, 671, 722
BstX2I	RGATCY	1 cut(s)	927
BstYI	RGATCY	1 cut(s)	927
BsuRI	GGCC	2 cut(s)	146, 681
BtsCI	GGATG	2 cut(s)	676, 919
BtsI	GCAGTG	2 cut(s)	246, 302
BtsIMutI	CAGTG	3 cut(s)	246, 302, 689
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	2 cut(s)	241, 822
Cfr10I	RCCGGY	1 cut(s)	602
CviAII	CATG	7 cut(s)	67, 121, 242, 380, 397, 823, 847
DdeI	CTNAG	4 cut(s)	75, 318, 324, 516
DpnI	GATC	4 cut(s)	39, 71, 618, 929
DpnII	GATC	4 cut(s)	37, 69, 616, 927
EaeI	YGGCCR	2 cut(s)	144, 679
Eam1104I	CTCTTC	3 cut(s)	82, 660, 987
EarI	CTCTTC	3 cut(s)	82, 660, 987
Eco130I	CCWWGG	1 cut(s)	637
Eco32I	GATATC	2 cut(s)	130, 1038
Eco57I	CTGAAG	1 cut(s)	684
EcoNI	CCTNNNNNAGG	1 cut(s)	46
EcoRV	GATATC	2 cut(s)	130, 1038
EcoT14I	CCWWGG	1 cut(s)	637
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	7 cut(s)	70, 124, 245, 383, 400, 826, 850
FaqI	GGGAC	2 cut(s)	416, 997
FatI	CATG	7 cut(s)	66, 120, 241, 379, 396, 822, 846
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	7 cut(s)	369, 494, 513, 549, 660, 679, 711
FokI	GGATG	2 cut(s)	683, 926
Fsp4HI	GCNGC	7 cut(s)	369, 494, 513, 549, 660, 679, 711
FspBI	CTAG	4 cut(s)	585, 789, 875, 1075
GluI	GCNGC	7 cut(s)	369, 494, 513, 549, 660, 679, 711
GsuI	CTGGAG	2 cut(s)	290, 420
HaeIII	GGCC	2 cut(s)	146, 681
HapII	CCGG	2 cut(s)	603, 1055
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	7 cut(s)	70, 124, 245, 383, 400, 826, 850
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HindIII	AAGCTT	4 cut(s)	254, 407, 468, 533
HinfI	GANTC	6 cut(s)	355, 430, 723, 760, 850, 861
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	2 cut(s)	603, 1055
HphI	GGTGA	3 cut(s)	154, 328, 518
Hpy166II	GTNNAC	2 cut(s)	118, 484
Hpy188I	TCNGA	3 cut(s)	388, 633, 765
Hpy188III	TCNNGA	7 cut(s)	103, 242, 269, 427, 437, 823, 854
Hpy8I	GTNNAC	2 cut(s)	118, 484
Hpy99I	CGWCG	2 cut(s)	209, 355
HpyAV	CCTTC	4 cut(s)	52, 77, 497, 851
HpyCH4III	ACNGT	5 cut(s)	32, 195, 305, 580, 907
HpyCH4IV	ACGT	2 cut(s)	221, 350
HpyCH4V	TGCA	4 cut(s)	251, 295, 917, 1006
HpyF10VI	GCNNNNNNNGC	3 cut(s)	257, 532, 570
HpyF3I	CTNAG	4 cut(s)	75, 318, 324, 516
HpySE526I	ACGT	2 cut(s)	221, 350
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	7 cut(s)	70, 124, 245, 383, 400, 826, 850
Ksp22I	TGATCA	1 cut(s)	69
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	4 cut(s)	37, 69, 616, 927
LmnI	GCTCC	5 cut(s)	188, 523, 578, 633, 730
LpnPI	CCDG	9 cut(s)	160, 246, 254, 330, 450, 555, 616, 695, 1068
Lsp1109I	GCAGC	5 cut(s)	499, 505, 560, 671, 722
LweI	GCATC	4 cut(s)	48, 108, 828, 904
MaeI	CTAG	4 cut(s)	585, 789, 875, 1075
MaeII	ACGT	2 cut(s)	221, 350
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	4 cut(s)	39, 71, 618, 929
MboI	GATC	4 cut(s)	37, 69, 616, 927
MboII	GAAGA	7 cut(s)	99, 457, 475, 604, 677, 1004, 1031
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	1 cut(s)	927
MhlI	GDGCHC	2 cut(s)	193, 241
MlsI	TGGCCA	1 cut(s)	146
MluCI	AATT	3 cut(s)	415, 795, 840
MluNI	TGGCCA	1 cut(s)	146
MlyI	GAGTC	1 cut(s)	859
MmeI	TCCRAC	1 cut(s)	51
Mox20I	TGGCCA	1 cut(s)	146
MscI	TGGCCA	1 cut(s)	146
MseI	TTAA	4 cut(s)	117, 393, 537, 1028
Msp20I	TGGCCA	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	662
MspCI	CTTAAG	1 cut(s)	536
MspI	CCGG	2 cut(s)	603, 1055
MspR9I	CCNGG	1 cut(s)	1055
MunI	CAATTG	1 cut(s)	795
MvnI	CGCG	1 cut(s)	371
MwoI	GCNNNNNNNGC	3 cut(s)	257, 532, 570
NciI	CCSGG	1 cut(s)	1055
NdeII	GATC	4 cut(s)	37, 69, 616, 927
NlaIII	CATG	7 cut(s)	70, 124, 245, 383, 400, 826, 850
NlaIV	GGNNCC	3 cut(s)	314, 574, 635
NmuCI	GTSAC	1 cut(s)	608
NspI	RCATGY	1 cut(s)	383
PagI	TCATGA	2 cut(s)	241, 822
PfeI	GAWTC	5 cut(s)	355, 430, 723, 760, 861
PkrI	GCNGC	7 cut(s)	370, 495, 514, 550, 661, 680, 712
PleI	GAGTC	1 cut(s)	858
PpsI	GAGTC	1 cut(s)	858
PspN4I	GGNNCC	3 cut(s)	314, 574, 635
PsuI	RGATCY	1 cut(s)	927
PvuII	CAGCTG	1 cut(s)	662
SaqAI	TTAA	4 cut(s)	117, 393, 537, 1028
SatI	GCNGC	7 cut(s)	369, 494, 513, 549, 660, 679, 711
Sau3AI	GATC	4 cut(s)	37, 69, 616, 927
SchI	GAGTC	1 cut(s)	859
ScrFI	CCNGG	1 cut(s)	1055
SduI	GDGCHC	2 cut(s)	193, 241
SfaNI	GCATC	4 cut(s)	48, 108, 828, 904
SfcI	CTRYAG	2 cut(s)	8, 46
SmlI	CTYRAG	4 cut(s)	425, 497, 536, 965
SmoI	CTYRAG	4 cut(s)	425, 497, 536, 965
Sse9I	AATT	3 cut(s)	415, 795, 840
SsiI	CCGC	3 cut(s)	369, 600, 678
SspMI	CTAG	4 cut(s)	585, 789, 875, 1075
StyD4I	CCNGG	1 cut(s)	1053
StyI	CCWWGG	1 cut(s)	637
TaaI	ACNGT	5 cut(s)	32, 195, 305, 580, 907
TaiI	ACGT	2 cut(s)	224, 353
TaqI	TCGA	3 cut(s)	204, 353, 726
TasI	AATT	3 cut(s)	415, 795, 840
TauI	GCSGC	2 cut(s)	371, 681
TfiI	GAWTC	5 cut(s)	355, 430, 723, 760, 861
Tru1I	TTAA	4 cut(s)	117, 393, 537, 1028
Tru9I	TTAA	4 cut(s)	117, 393, 537, 1028
TscAI	CASTG	3 cut(s)	253, 302, 689
TseFI	GTSAC	1 cut(s)	608
TseI	GCWGC	5 cut(s)	493, 512, 548, 659, 710
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	268, 773, 839, 1064
TspRI	CASTG	3 cut(s)	253, 302, 689
Vha464I	CTTAAG	1 cut(s)	536
XagI	CCTNNNNNAGG	1 cut(s)	46
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	383
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	4 cut(s)	585, 789, 875, 1075
ZraI	GACGTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.