DDE superfamily endonuclease
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g18412 FvH4_3g09360 FvH4_4g09542 |
| rosa_samantha | Rh5AG062900 Rh5CG069800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 59 |
| AgsI | TTSAA | 1 cut(s) | 68 |
| AluBI | AGCT | 2 cut(s) | 161, 200 |
| AluI | AGCT | 2 cut(s) | 161, 200 |
| AoxI | GGCC | 1 cut(s) | 188 |
| ApeKI | GCWGC | 3 cut(s) | 161, 200, 209 |
| AspS9I | GGNCC | 1 cut(s) | 189 |
| BanI | GGYRCC | 1 cut(s) | 59 |
| BbsI | GAAGAC | 1 cut(s) | 48 |
| BbvI | GCAGC | 3 cut(s) | 148, 187, 196 |
| BclI | TGATCA | 1 cut(s) | 76 |
| BfaI | CTAG | 1 cut(s) | 237 |
| BglII | AGATCT | 1 cut(s) | 230 |
| BisI | GCNGC | 3 cut(s) | 162, 201, 210 |
| BlsI | GCNGC | 3 cut(s) | 163, 202, 211 |
| BmgT120I | GGNCC | 1 cut(s) | 189 |
| BmiI | GGNNCC | 1 cut(s) | 61 |
| BpiI | GAAGAC | 1 cut(s) | 48 |
| Bpu10I | CCTNAGC | 1 cut(s) | 165 |
| BseXI | GCAGC | 3 cut(s) | 148, 187, 196 |
| BshFI | GGCC | 1 cut(s) | 190 |
| BshNI | GGYRCC | 1 cut(s) | 59 |
| BsnI | GGCC | 1 cut(s) | 190 |
| Bsp143I | GATC | 2 cut(s) | 76, 230 |
| BspANI | GGCC | 1 cut(s) | 190 |
| BspLI | GGNNCC | 1 cut(s) | 61 |
| BspT107I | GGYRCC | 1 cut(s) | 59 |
| BssMI | GATC | 2 cut(s) | 76, 230 |
| Bst4CI | ACNGT | 1 cut(s) | 64 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 161, 209 |
| BstC8I | GCNNGC | 1 cut(s) | 144 |
| BstDEI | CTNAG | 2 cut(s) | 103, 165 |
| BstKTI | GATC | 2 cut(s) | 79, 233 |
| BstMBI | GATC | 2 cut(s) | 76, 230 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 152, 161, 206, 209, 215 |
| BstV1I | GCAGC | 3 cut(s) | 148, 187, 196 |
| BstV2I | GAAGAC | 1 cut(s) | 48 |
| BstX2I | RGATCY | 1 cut(s) | 230 |
| BstYI | RGATCY | 1 cut(s) | 230 |
| BsuRI | GGCC | 1 cut(s) | 190 |
| Cac8I | GCNNGC | 1 cut(s) | 144 |
| Cfr13I | GGNCC | 1 cut(s) | 189 |
| CviJI | RGCY | 5 cut(s) | 142, 161, 190, 200, 209 |
| CviKI_1 | RGCY | 5 cut(s) | 142, 161, 190, 200, 209 |
| DdeI | CTNAG | 2 cut(s) | 103, 165 |
| DpnI | GATC | 2 cut(s) | 78, 232 |
| DpnII | GATC | 2 cut(s) | 76, 230 |
| FbaI | TGATCA | 1 cut(s) | 76 |
| Fnu4HI | GCNGC | 3 cut(s) | 162, 201, 210 |
| Fsp4HI | GCNGC | 3 cut(s) | 162, 201, 210 |
| FspBI | CTAG | 1 cut(s) | 237 |
| GluI | GCNGC | 3 cut(s) | 162, 201, 210 |
| HaeIII | GGCC | 1 cut(s) | 190 |
| HinfI | GANTC | 1 cut(s) | 68 |
| Hpy188I | TCNGA | 1 cut(s) | 76 |
| HpyAV | CCTTC | 1 cut(s) | 132 |
| HpyCH4III | ACNGT | 1 cut(s) | 64 |
| HpyCH4IV | ACGT | 1 cut(s) | 36 |
| HpyCH4V | TGCA | 4 cut(s) | 146, 203, 212, 218 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 152, 161, 206, 209, 215 |
| HpyF3I | CTNAG | 2 cut(s) | 103, 165 |
| HpySE526I | ACGT | 1 cut(s) | 36 |
| Ksp22I | TGATCA | 1 cut(s) | 76 |
| Kzo9I | GATC | 2 cut(s) | 76, 230 |
| LpnPI | CCDG | 1 cut(s) | 205 |
| Lsp1109I | GCAGC | 3 cut(s) | 148, 187, 196 |
| MaeI | CTAG | 1 cut(s) | 237 |
| MaeII | ACGT | 1 cut(s) | 36 |
| MalI | GATC | 2 cut(s) | 78, 232 |
| MboI | GATC | 2 cut(s) | 76, 230 |
| MboII | GAAGA | 2 cut(s) | 53, 147 |
| MflI | RGATCY | 1 cut(s) | 230 |
| MluCI | AATT | 1 cut(s) | 177 |
| MnlI | CCTC | 2 cut(s) | 87, 123 |
| MseI | TTAA | 1 cut(s) | 120 |
| MslI | CAYNNNNRTG | 1 cut(s) | 50 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 152, 161, 206, 209, 215 |
| NdeII | GATC | 2 cut(s) | 76, 230 |
| NlaIV | GGNNCC | 1 cut(s) | 61 |
| PfeI | GAWTC | 1 cut(s) | 68 |
| PkrI | GCNGC | 3 cut(s) | 163, 202, 211 |
| PspN4I | GGNNCC | 1 cut(s) | 61 |
| PspPI | GGNCC | 1 cut(s) | 189 |
| PsuI | RGATCY | 1 cut(s) | 230 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RseI | CAYNNNNRTG | 1 cut(s) | 50 |
| SaqAI | TTAA | 1 cut(s) | 120 |
| SatI | GCNGC | 3 cut(s) | 162, 201, 210 |
| Sau3AI | GATC | 2 cut(s) | 76, 230 |
| Sau96I | GGNCC | 1 cut(s) | 189 |
| SetI | ASST | 4 cut(s) | 39, 163, 171, 202 |
| SgeI | CNNG | 9 cut(s) | 49, 102, 155, 159, 168, 198, 204, 216, 231 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 50 |
| Sse9I | AATT | 1 cut(s) | 177 |
| SspMI | CTAG | 1 cut(s) | 237 |
| TaaI | ACNGT | 1 cut(s) | 64 |
| TaiI | ACGT | 1 cut(s) | 39 |
| TasI | AATT | 1 cut(s) | 177 |
| TfiI | GAWTC | 1 cut(s) | 68 |
| Tru1I | TTAA | 1 cut(s) | 120 |
| Tru9I | TTAA | 1 cut(s) | 120 |
| TseI | GCWGC | 3 cut(s) | 161, 200, 209 |
| TspDTI | ATGAA | 1 cut(s) | 240 |
| XspI | CTAG | 1 cut(s) | 237 |