Rh5AG062900

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
5294977 .. 5295979
1003 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG062900.1

Sequence Viewer

Length: 171 bp
ATGGCTCGCAGTCCTGTCCAGGATCCCATGCTTCTTGAAGTGGTCGATGACAACTGGTTCAGTGGACGCAGAGAGAACAACAAGACCGAGAGAGGACGGAGACCCAACACTAGTGGCTCAATACGCCAAAATATTGAGTTGGCTCTTGGCTTGGTGATGAAGGCAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

56

Amino Acids

6.35

Weight (kDa)

9.95

Isoelectric Point (pI)

76.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0020820)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18412 FvH4_3g09360 FvH4_4g09542
rosa_samantha Rh5AG062900 Rh5CG069800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 17, 30
AgsI TTSAA 1 cut(s) 38
AhlI ACTAGT 1 cut(s) 110
AjnI CCWGG 1 cut(s) 18
Alw26I GTCTC 1 cut(s) 94
AlwI GGATC 2 cut(s) 17, 30
AsuHPI GGTGA 1 cut(s) 166
BamHI GGATCC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 94
BcuI ACTAGT 1 cut(s) 110
BfaI CTAG 1 cut(s) 111
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 20
BsaI GGTCTC 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 20
BseNI ACTGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 94
Bso31I GGTCTC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 22
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 17, 30
BspTNI GGTCTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 59
BssMI GATC 1 cut(s) 22
Bst2UI CCWGG 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 25
BstMAI GTCTC 1 cut(s) 94
BstMBI GATC 1 cut(s) 22
BstMWI GCNNNNNNNGC 1 cut(s) 123
BstNI CCWGG 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 67, 171
Cac8I GCNNGC 1 cut(s) 7
CseI GACGC 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 1 cut(s) 28
CviJI RGCY 4 cut(s) 5, 117, 143, 150
CviKI_1 RGCY 4 cut(s) 5, 117, 143, 150
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 31
FaiI YATR 1 cut(s) 29
FatI CATG 1 cut(s) 27
FspBI CTAG 1 cut(s) 111
HgaI GACGC 1 cut(s) 75
Hin1II CATG 1 cut(s) 31
HphI GGTGA 1 cut(s) 166
Hpy166II GTNNAC 1 cut(s) 65
Hpy188III TCNNGA 1 cut(s) 35
Hpy8I GTNNAC 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 123
Hsp92II CATG 1 cut(s) 31
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 4 cut(s) 5, 27, 32, 40
MaeI CTAG 1 cut(s) 111
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MflI RGATCY 1 cut(s) 22
MnlI CCTC 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 1 cut(s) 123
NdeII GATC 1 cut(s) 22
NlaIII CATG 1 cut(s) 31
NlaIV GGNNCC 1 cut(s) 24
PfoI TCCNGGA 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 18
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 1 cut(s) 22
Sau3AI GATC 1 cut(s) 22
ScrFI CCNGG 1 cut(s) 20
SpeI ACTAGT 1 cut(s) 110
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 111
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 45
TaqII GACCGA 1 cut(s) 101
TscAI CASTG 2 cut(s) 67, 171
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 67, 171
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.