FvH4_3g11420

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017100
Physical Location & Seq
Reverse (-)
6728647 .. 6731523
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11420.t2

Sequence Viewer

Length: 1212 bp
ATGGGTACTCGAGTTATGAGGTTGATAATGAAGCAGCCCCATTATGGGTTTTTGGGTGTTCGGTTGAAAACAACATCGTCCCAGTATGTGGCATCAAGAGCCAGAGATCCCACGTTTGAGAAACTAATGGATAAGTACAAGAACCTTGTCAAAGTCGTTGCAGTGCAAGATCTTATCCTCGCAAACCCGAGTGACCCTGCAGTTTCTGTTGATTTTCTGTCCAGGCTCTCTCAAAAGCTCCATCTCAACCGTGGTGCAGTCGCCTTTCTTCGCAAATACCCTCATATTTTCCACATTTACCATGACCCGACAAAGGGACAGACACGATGCACATTAACTGATACTGCGTTTAGGATTTCAGAAGAAGAAGCAGAGGCTATTAATGCCTCGTTGCCACTTGTTGTTGATCGATTGGTTCGGCTTCTGTCCATGTCGACTTCCAAGATGTTGCCACTACGTGGCATTTTTAAAGTTTTCAGAGAACTTGGGCTTCCTGATGATTTTGAGCAGTCTGTAATATCTAAAAACTCCCATCTTTTTCAACTTTGTGATGCTCATGAGCCCAATACTCATAACTTGAAACTGGTTGGTGAAATTTCTGACAAGTTTGTTGCAGCTGTTGAGAATTGGAGGGTAGAGGAATATTGCAAGGAGGGTTGCAGTGTTGATAGGGCTGAACTTCAGTTTAGTTTTAAGCATGGGTATCCTCCAGGGATGAGGTTAAAAAAGAATTTTAGAGCCAAGGTTAAAGAATGGCAGAAGTTGCCATATGTCGGGCCATATGATGAGGTCACAGAGAAGAAGAGGTTGTCTAAAGCTGGAATGAAAGTAGGGGAGAAACGAGCGGTTGCAATAGTTCATGAGTTCTTGAATCTGACAGTTGAGAAGATGGTTGAAGTGGAGAAAATCAGTCATTTCAGAAAATTGTATGGGTTTGATTTAAATATAAGGGATTTGTTCCTGGATCACCCTGGGATGTTTTATTTGTCTACCAAGGGAAAGCGACACACTGTTTTTCTGAGAGAAGCTTATGAGAAAGGCTGTTTGATTCACCCAAATCCAGTTTATAATGCAAGGAGAAAGCTACTGGATCTTGTTGTTTTAGGACGTCATGATATGTTTACTGGTGACTCAAAGATGAAGAGCATTGCTAATAGTAAGGAGGCTGAGTTTCTGGAGCAGTTCAATGGAGAAACCTCCGACTCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

404

Amino Acids

46.32

Weight (kDa)

9.33

Isoelectric Point (pI)

30.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 26 - 295 8.3e-77 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06440
fragaria_vesca FvH4_3g11420 FvH4_3g11420 FvH4_3g11420
prunus_persica Prupe.4G102100_v2.0.a1
rosa_laevigata RLG00000032356
rosa_multiflora Rmu_sc0004464.1_g000003
rosa_rugosa Rorug05G0041900
rosa_samantha Rh5AG135200 Rh5BG133800 Rh5CG145600 Rh5DG135200
rosa_wichuraiana Rw5G011810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
AatII GACGTC 1 cut(s) 1111
AccB7I CCANNNNNTGG 2 cut(s) 88, 458
AccBSI CCGCTC 1 cut(s) 845
AccI GTMKAC 2 cut(s) 434, 989
AciI CCGC 1 cut(s) 845
AclWI GGATC 3 cut(s) 101, 972, 1098
AcsI RAATTY 2 cut(s) 594, 730
AcuI CTGAAG 1 cut(s) 665
AcyI GRCGYC 1 cut(s) 1108
AdeI CACNNNGTG 1 cut(s) 458
AfaI GTAC 2 cut(s) 7, 137
AfiI CCNNNNNNNGG 7 cut(s) 44, 45, 88, 313, 314, 458, 773
AgsI TTSAA 6 cut(s) 67, 542, 580, 871, 896, 1186
AjnI CCWGG 4 cut(s) 221, 709, 960, 970
AluBI AGCT 5 cut(s) 238, 617, 818, 1028, 1084
AluI AGCT 5 cut(s) 238, 617, 818, 1028, 1084
AlwI GGATC 3 cut(s) 101, 972, 1098
AlwNI CAGNNNCTG 1 cut(s) 206
Ama87I CYCGRG 2 cut(s) 9, 187
AoxI GGCC 1 cut(s) 776
ApeKI GCWGC 2 cut(s) 34, 614
ApoI RAATTY 2 cut(s) 594, 730
AseI ATTAAT 1 cut(s) 381
AspS9I GGNCC 1 cut(s) 776
AsuHPI GGTGA 4 cut(s) 602, 959, 1043, 1139
AvaI CYCGRG 2 cut(s) 9, 187
BaeI ACNNNNGTAYC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 564
BbvI GCAGC 2 cut(s) 46, 626
BccI CCATC 3 cut(s) 249, 540, 883
BciT130I CCWGG 4 cut(s) 223, 711, 962, 972
BciVI GTATCC 1 cut(s) 714
BfmI CTRYAG 1 cut(s) 198
BfuI GTATCC 1 cut(s) 714
BglII AGATCT 1 cut(s) 169
BisI GCNGC 2 cut(s) 35, 615
BlsI GCNGC 2 cut(s) 36, 616
Bme1390I CCNGG 4 cut(s) 223, 711, 962, 972
BmeT110I CYCGRG 2 cut(s) 9, 187
BmgT120I GGNCC 1 cut(s) 776
BmrFI CCNGG 4 cut(s) 223, 711, 962, 972
BmrI ACTGGG 1 cut(s) 76
BmsI GCATC 3 cut(s) 101, 317, 541
BmuI ACTGGG 1 cut(s) 76
BpmI CTGGAG 2 cut(s) 693, 1196
Bsa29I ATCGAT 1 cut(s) 409
BsaAI YACGTR 1 cut(s) 458
BsaHI GRCGYC 1 cut(s) 1108
BsaJI CCNNGG 6 cut(s) 250, 710, 741, 970, 971, 993
BsaXI ACNNNNNCTCC 2 cut(s) 1154, 1184
Bsc4I CCNNNNNNNGG 7 cut(s) 44, 45, 88, 313, 314, 458, 773
Bse1I ACTGG 5 cut(s) 82, 588, 1061, 1092, 1129
Bse3DI GCAATG 1 cut(s) 1146
BseBI CCWGG 4 cut(s) 223, 711, 962, 972
BseCI ATCGAT 1 cut(s) 409
BseDI CCNNGG 6 cut(s) 250, 710, 741, 970, 971, 993
BseGI GGATG 2 cut(s) 720, 981
BseLI CCNNNNNNNGG 7 cut(s) 44, 45, 88, 313, 314, 458, 773
BseMI GCAATG 1 cut(s) 1146
BseMII CTCAG 2 cut(s) 1010, 1158
BseNI ACTGG 5 cut(s) 82, 588, 1061, 1092, 1129
BseXI GCAGC 2 cut(s) 46, 626
BsgI GTGCAG 1 cut(s) 276
BshFI GGCC 1 cut(s) 778
BshVI ATCGAT 1 cut(s) 409
BsiHKCI CYCGRG 2 cut(s) 9, 187
BslFI GGGAC 2 cut(s) 64, 330
BslI CCNNNNNNNGG 7 cut(s) 44, 45, 88, 313, 314, 458, 773
BsmFI GGGAC 2 cut(s) 64, 330
BsnI GGCC 1 cut(s) 778
BsoBI CYCGRG 2 cut(s) 9, 187
Bsp1286I GDGCHC 1 cut(s) 564
Bsp143I GATC 5 cut(s) 106, 169, 406, 964, 1090
BspACI CCGC 1 cut(s) 845
BspANI GGCC 1 cut(s) 778
BspCNI CTCAG 2 cut(s) 1011, 1159
BspDI ATCGAT 1 cut(s) 409
BspHI TCATGA 3 cut(s) 556, 859, 1111
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 3 cut(s) 101, 972, 1098
BspQI GCTCTTC 1 cut(s) 1136
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 1146
BsrI ACTGG 5 cut(s) 82, 588, 1061, 1092, 1129
BssECI CCNNGG 6 cut(s) 250, 710, 741, 970, 971, 993
BssMI GATC 5 cut(s) 106, 169, 406, 964, 1090
BssNI GRCGYC 1 cut(s) 1108
BssT1I CCWWGG 2 cut(s) 741, 993
Bst2UI CCWGG 4 cut(s) 223, 711, 962, 972
Bst4CI ACNGT 3 cut(s) 251, 880, 1012
Bst6I CTCTTC 2 cut(s) 797, 1136
BstACI GRCGYC 1 cut(s) 1108
BstAPI GCANNNNNTGC 1 cut(s) 763
BstBAI YACGTR 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 1019, 1167, 1204
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 720, 981
BstKTI GATC 5 cut(s) 109, 172, 409, 967, 1093
BstMBI GATC 5 cut(s) 106, 169, 406, 964, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 98, 383, 763
BstNI CCWGG 4 cut(s) 223, 711, 962, 972
BstSCI CCNGG 4 cut(s) 221, 709, 960, 970
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 46, 626
BstX2I RGATCY 3 cut(s) 106, 169, 1090
BstYI RGATCY 3 cut(s) 106, 169, 1090
Bsu15I ATCGAT 1 cut(s) 409
BsuI GTATCC 1 cut(s) 714
BsuRI GGCC 1 cut(s) 778
BsuTUI ATCGAT 1 cut(s) 409
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 720, 981
BtsI GCAGTG 2 cut(s) 168, 667
BtsIMutI CAGTG 3 cut(s) 168, 667, 1008
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 3 cut(s) 556, 859, 1111
Cfr13I GGNCC 1 cut(s) 776
ClaI ATCGAT 1 cut(s) 409
Csp6I GTAC 2 cut(s) 6, 136
CviAII CATG 6 cut(s) 302, 430, 557, 698, 860, 1112
CviQI GTAC 2 cut(s) 6, 136
DdeI CTNAG 3 cut(s) 1019, 1167, 1204
DpnI GATC 5 cut(s) 108, 171, 408, 966, 1092
DpnII GATC 5 cut(s) 106, 169, 406, 964, 1090
DraI TTTAAA 2 cut(s) 469, 942
DraIII CACNNNGTG 1 cut(s) 458
Eam1104I CTCTTC 2 cut(s) 797, 1136
EarI CTCTTC 2 cut(s) 797, 1136
Eco130I CCWWGG 2 cut(s) 741, 993
Eco24I GRGCYC 1 cut(s) 564
Eco57I CTGAAG 1 cut(s) 665
Eco88I CYCGRG 2 cut(s) 9, 187
EcoRII CCWGG 4 cut(s) 221, 709, 960, 970
EcoT14I CCWWGG 2 cut(s) 741, 993
EcoT38I GRGCYC 1 cut(s) 564
ErhI CCWWGG 2 cut(s) 741, 993
FaeI CATG 6 cut(s) 305, 433, 560, 701, 863, 1115
FaqI GGGAC 2 cut(s) 64, 330
FatI CATG 6 cut(s) 301, 429, 556, 697, 859, 1111
FauNDI CATATG 2 cut(s) 769, 781
FblI GTMKAC 2 cut(s) 434, 989
Fnu4HI GCNGC 2 cut(s) 35, 615
FokI GGATG 2 cut(s) 727, 988
FriOI GRGCYC 1 cut(s) 564
Fsp4HI GCNGC 2 cut(s) 35, 615
GluI GCNGC 2 cut(s) 35, 615
GsuI CTGGAG 2 cut(s) 693, 1196
HaeIII GGCC 1 cut(s) 778
Hin1I GRCGYC 1 cut(s) 1108
Hin1II CATG 6 cut(s) 305, 433, 560, 701, 863, 1115
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HindIII AAGCTT 1 cut(s) 1026
HinfI GANTC 4 cut(s) 871, 1048, 1130, 1202
HphI GGTGA 4 cut(s) 602, 959, 1043, 1139
Hpy166II GTNNAC 3 cut(s) 435, 990, 1122
Hpy188I TCNGA 8 cut(s) 361, 479, 601, 876, 920, 1020, 1201, 1207
Hpy188III TCNNGA 7 cut(s) 96, 494, 557, 860, 868, 1112, 1175
Hpy8I GTNNAC 3 cut(s) 435, 990, 1122
HpyCH4III ACNGT 3 cut(s) 251, 880, 1012
HpyCH4IV ACGT 3 cut(s) 113, 457, 1108
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 383, 763
HpyF3I CTNAG 3 cut(s) 1019, 1167, 1204
HpySE526I ACGT 3 cut(s) 113, 457, 1108
Hsp92I GRCGYC 1 cut(s) 1108
Hsp92II CATG 6 cut(s) 305, 433, 560, 701, 863, 1115
Kzo9I GATC 5 cut(s) 106, 169, 406, 964, 1090
LguI GCTCTTC 1 cut(s) 1136
LmnI GCTCC 2 cut(s) 243, 1177
Lsp1109I GCAGC 2 cut(s) 46, 626
LweI GCATC 3 cut(s) 101, 317, 541
MaeII ACGT 3 cut(s) 113, 457, 1108
MaeIII GTNAC 3 cut(s) 191, 790, 1127
MalI GATC 5 cut(s) 108, 171, 408, 966, 1092
MbiI CCGCTC 1 cut(s) 845
MboI GATC 5 cut(s) 106, 169, 406, 964, 1090
MboII GAAGA 7 cut(s) 260, 374, 377, 811, 814, 898, 1153
MflI RGATCY 3 cut(s) 106, 169, 1090
MhlI GDGCHC 1 cut(s) 564
MluCI AATT 4 cut(s) 594, 625, 730, 923
MlyI GAGTC 2 cut(s) 1124, 1196
MseI TTAA 7 cut(s) 335, 381, 468, 693, 722, 747, 941
MspA1I CMGCKG 1 cut(s) 617
MspR9I CCNGG 4 cut(s) 223, 711, 962, 972
MvaI CCWGG 4 cut(s) 223, 711, 962, 972
MwoI GCNNNNNNNGC 3 cut(s) 98, 383, 763
NdeI CATATG 2 cut(s) 769, 781
NdeII GATC 5 cut(s) 106, 169, 406, 964, 1090
NlaIII CATG 6 cut(s) 305, 433, 560, 701, 863, 1115
NmuCI GTSAC 3 cut(s) 191, 790, 1127
PaeR7I CTCGAG 1 cut(s) 9
PagI TCATGA 3 cut(s) 556, 859, 1111
PasI CCCWGGG 1 cut(s) 971
PciSI GCTCTTC 1 cut(s) 1136
PfeI GAWTC 2 cut(s) 871, 1048
PflMI CCANNNNNTGG 2 cut(s) 88, 458
PfoI TCCNGGA 1 cut(s) 960
PkrI GCNGC 2 cut(s) 36, 616
PleI GAGTC 2 cut(s) 1124, 1196
PpsI GAGTC 2 cut(s) 1124, 1196
Ppu21I YACGTR 1 cut(s) 458
PshBI ATTAAT 1 cut(s) 381
PsiI TTATAA 1 cut(s) 1068
Psp6I CCWGG 4 cut(s) 221, 709, 960, 970
PspGI CCWGG 4 cut(s) 221, 709, 960, 970
PspPI GGNCC 1 cut(s) 776
PspXI VCTCGAGB 1 cut(s) 9
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 206
PsuI RGATCY 3 cut(s) 106, 169, 1090
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 2 cut(s) 7, 137
RsaNI GTAC 2 cut(s) 6, 136
SalI GTCGAC 1 cut(s) 433
SapI GCTCTTC 1 cut(s) 1136
SaqAI TTAA 7 cut(s) 335, 381, 468, 693, 722, 747, 941
SatI GCNGC 2 cut(s) 35, 615
Sau3AI GATC 5 cut(s) 106, 169, 406, 964, 1090
Sau96I GGNCC 1 cut(s) 776
SchI GAGTC 2 cut(s) 1124, 1196
ScrFI CCNGG 4 cut(s) 223, 711, 962, 972
SduI GDGCHC 1 cut(s) 564
SfaNI GCATC 3 cut(s) 101, 317, 541
SfcI CTRYAG 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 9
SlaI CTCGAG 1 cut(s) 9
SmiI ATTTAAAT 1 cut(s) 942
SmlI CTYRAG 1 cut(s) 9
SmoI CTYRAG 1 cut(s) 9
Sse9I AATT 4 cut(s) 594, 625, 730, 923
SsiI CCGC 1 cut(s) 845
SspI AATATT 1 cut(s) 644
StyD4I CCNGG 4 cut(s) 221, 709, 960, 970
StyI CCWWGG 2 cut(s) 741, 993
SwaI ATTTAAAT 1 cut(s) 942
TaaI ACNGT 3 cut(s) 251, 880, 1012
TaiI ACGT 3 cut(s) 116, 460, 1111
TaqI TCGA 3 cut(s) 10, 409, 434
TasI AATT 4 cut(s) 594, 625, 730, 923
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 2 cut(s) 871, 1048
Tru1I TTAA 7 cut(s) 335, 381, 468, 693, 722, 747, 941
Tru9I TTAA 7 cut(s) 335, 381, 468, 693, 722, 747, 941
TscAI CASTG 3 cut(s) 168, 667, 1015
TseFI GTSAC 3 cut(s) 191, 790, 1127
TseI GCWGC 2 cut(s) 34, 614
Tsp45I GTSAC 3 cut(s) 191, 790, 1127
TspDTI ATGAA 4 cut(s) 44, 839, 848, 1154
TspRI CASTG 3 cut(s) 168, 667, 1015
Van91I CCANNNNNTGG 2 cut(s) 88, 458
VspI ATTAAT 1 cut(s) 381
XapI RAATTY 2 cut(s) 594, 730
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XhoI CTCGAG 1 cut(s) 9
XmiI GTMKAC 2 cut(s) 434, 989
ZraI GACGTC 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.