Rw5G011810

protein ROOT PRIMORDIUM DEFECTIVE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0017100
Physical Location & Seq
Reverse (-)
13626272 .. 13627889
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011810.1

Sequence Viewer

Length: 1212 bp
ATGGGTACCCAAGTTATGAGATTGATAATGAAGCAGCAGCCCTGCTATCGGTTATTGGGTGTTCGGTTGAAAACAACCTCATCACAGTATGTAGCATCAAGATCCAGAGATCCCACGTTTGAGAAATTAATGGATAAGTACAAGAACCTTGTCAAAGTCGTTGCAGTGCAAGATCTCATCCTCGCAAACCCCAGTGACCCCGCAGTTTCCGTTGATTTTCTGTCCAGGCTCTCCCAAAAGCTCCATCTCAACCGCGGTGCAGTTGCCTTCCTCCGCAAATACCCTCATATTTTCCACATTTACCATGACCCAACAAAGGGACAGACACGATGCACATTAACTGATACTGCTTTTCGAATTTCAGAAGAAGAAGCAGAGGCTATTAATGCCTCGTTGCCACTTGTTGTTGATCGATTGGTTCGGCTTCTGTCAATGTCGACTTCCAAGATGTTGCCACTGCGCACCATTTTTAAAGTTTGCAGGGAACTTGGGCTTCCTGATGATTTTGAGGAGTCTGTAATAACTAAAAACTCCCATCTTTTTCAACTTTTTGATGCTCATGAACCCAACACCCATAACTTGAAACTGGTTGGTGCAATTTCTGACAAGTTTGTTGCAGCTGTTGAGAATTGGAGGGTAGAGGAATATTGCAAAGAGGGTTGCAGTGTTGATAGGGCTCAACTTCAGTTTAGTTTTAAGCATGGATATCCTCCAGGGATGAGGTTAAGAAAGAATTTTAGAGCCAAGGTTAAAGAATGGCAGAAGTTGCCATACATCGGGCCATATGATGAGGTCACAGAGAAGAGGTTGTCTAAAGCTGGAATGATAGTTGGGGAGAAACGAGCAGTTGCAATAGTTCATGAGTTCTTGAATCTGACAGTTGAGAGGATGGTTGAAGTGGAGAAAATCAGTCATTTCAGAAAATGCTTTGGGTTTGATTTGAATATAAGGGATTTGTTCCTGGATCACCCTGGGATGTTTTATTTGTCTACCAAGGGAAAGAGACACACTGTTTTTCTGAGAGAAGCTTATGAGAGAGGGTGTTTGATTCACCCAAATTCGGTTTATAATGCAAGGAGAAAGCTACTGGATCTTGTTGTTTTGGGGCGTCATGATATGTTTACTGGTGACACAAAGATGAGGAGTATTGCTAATAGCAAGGAGGCTGAGTTTCTGGAGCAGTACAATGGAGAAACCTCCGACTCTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PORR

Protein Analysis

403

Amino Acids

46.44

Weight (kDa)

9.25

Isoelectric Point (pI)

30.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PORR PF11955 36 - 370 5e-107 Plant organelle RNA recognition domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017100)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G06440
fragaria_vesca FvH4_3g11420 FvH4_3g11420 FvH4_3g11420
prunus_persica Prupe.4G102100_v2.0.a1
rosa_laevigata RLG00000032356
rosa_multiflora Rmu_sc0004464.1_g000003
rosa_rugosa Rorug05G0041900
rosa_samantha Rh5AG135200 Rh5BG133800 Rh5CG145600 Rh5DG135200
rosa_wichuraiana Rw5G011810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
Acc16I TGCGCA 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 2 cut(s) 437, 989
AccII CGCG 1 cut(s) 255
AciI CCGC 4 cut(s) 201, 253, 255, 274
AclWI GGATC 4 cut(s) 96, 104, 972, 1098
AcsI RAATTY 3 cut(s) 357, 733, 1057
AcuI CTGAAG 1 cut(s) 668
AcyI GRCGYC 1 cut(s) 1108
AfaI GTAC 3 cut(s) 7, 140, 1184
AfiI CCNNNNNNNGG 5 cut(s) 48, 316, 317, 776, 1060
AgsI TTSAA 6 cut(s) 70, 545, 583, 871, 896, 943
AjnI CCWGG 4 cut(s) 224, 712, 960, 970
AluBI AGCT 5 cut(s) 241, 620, 818, 1028, 1084
AluI AGCT 5 cut(s) 241, 620, 818, 1028, 1084
Alw26I GTCTC 1 cut(s) 997
AlwI GGATC 4 cut(s) 96, 104, 972, 1098
AoxI GGCC 1 cut(s) 779
ApeKI GCWGC 3 cut(s) 34, 37, 617
ApoI RAATTY 3 cut(s) 357, 733, 1057
AseI ATTAAT 2 cut(s) 128, 384
Asp718I GGTACC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 1 cut(s) 779
AsuHPI GGTGA 3 cut(s) 959, 1043, 1139
AsuII TTCGAA 1 cut(s) 355
BaeI ACNNNNGTAYC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 679
BarI GAAGNNNNNNTAC 2 cut(s) 755, 787
BbvI GCAGC 3 cut(s) 46, 49, 629
BccI CCATC 3 cut(s) 252, 543, 883
BciT130I CCWGG 4 cut(s) 226, 714, 962, 972
BcoDI GTCTC 1 cut(s) 997
BglII AGATCT 1 cut(s) 172
BisI GCNGC 3 cut(s) 35, 38, 618
BlsI GCNGC 3 cut(s) 36, 39, 619
Bme1390I CCNGG 4 cut(s) 226, 714, 962, 972
BmgT120I GGNCC 1 cut(s) 779
BmiI GGNNCC 1 cut(s) 7
BmrFI CCNGG 4 cut(s) 226, 714, 962, 972
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 3 cut(s) 104, 320, 544
BmuI ACTGGG 1 cut(s) 186
BpmI CTGGAG 2 cut(s) 696, 1196
Bpu14I TTCGAA 1 cut(s) 355
Bsa29I ATCGAT 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 1108
BsaJI CCNNGG 6 cut(s) 253, 713, 744, 970, 971, 993
BsaXI ACNNNNNCTCC 2 cut(s) 1154, 1184
Bsc4I CCNNNNNNNGG 5 cut(s) 48, 316, 317, 776, 1060
Bse1I ACTGG 4 cut(s) 192, 591, 1092, 1129
BseBI CCWGG 4 cut(s) 226, 714, 962, 972
BseCI ATCGAT 1 cut(s) 412
BseDI CCNNGG 6 cut(s) 253, 713, 744, 970, 971, 993
BseGI GGATG 4 cut(s) 177, 723, 894, 981
BseLI CCNNNNNNNGG 5 cut(s) 48, 316, 317, 776, 1060
BseMII CTCAG 2 cut(s) 1010, 1158
BseNI ACTGG 4 cut(s) 192, 591, 1092, 1129
BseRI GAGGAG 2 cut(s) 524, 1156
BseXI GCAGC 3 cut(s) 46, 49, 629
BsgI GTGCAG 1 cut(s) 279
Bsh1236I CGCG 1 cut(s) 255
BshFI GGCC 1 cut(s) 781
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 412
BslFI GGGAC 1 cut(s) 333
BslI CCNNNNNNNGG 5 cut(s) 48, 316, 317, 776, 1060
BsmAI GTCTC 1 cut(s) 997
BsmFI GGGAC 1 cut(s) 333
BsnI GGCC 1 cut(s) 781
Bsp119I TTCGAA 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 679
Bsp143I GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
BspACI CCGC 4 cut(s) 201, 253, 255, 274
BspANI GGCC 1 cut(s) 781
BspCNI CTCAG 2 cut(s) 1011, 1159
BspDI ATCGAT 1 cut(s) 412
BspFNI CGCG 1 cut(s) 255
BspHI TCATGA 3 cut(s) 559, 859, 1111
BspLI GGNNCC 1 cut(s) 7
BspPI GGATC 4 cut(s) 96, 104, 972, 1098
BspT104I TTCGAA 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 5
BsrI ACTGG 4 cut(s) 192, 591, 1092, 1129
BssECI CCNNGG 6 cut(s) 253, 713, 744, 970, 971, 993
BssMI GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
BssNI GRCGYC 1 cut(s) 1108
BssT1I CCWWGG 2 cut(s) 744, 993
Bst2UI CCWGG 4 cut(s) 226, 714, 962, 972
Bst4CI ACNGT 3 cut(s) 87, 880, 1012
Bst6I CTCTTC 1 cut(s) 797
BstACI GRCGYC 1 cut(s) 1108
BstAPI GCANNNNNTGC 1 cut(s) 766
BstBI TTCGAA 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 1019, 1167
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 4 cut(s) 177, 723, 894, 981
BstFNI CGCG 1 cut(s) 255
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 6 cut(s) 104, 112, 175, 412, 967, 1093
BstMAI GTCTC 1 cut(s) 997
BstMBI GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 386, 766
BstNI CCWGG 4 cut(s) 226, 714, 962, 972
BstSCI CCNGG 4 cut(s) 224, 712, 960, 970
BstUI CGCG 1 cut(s) 255
BstV1I GCAGC 3 cut(s) 46, 49, 629
BstX2I RGATCY 4 cut(s) 101, 109, 172, 1090
BstYI RGATCY 4 cut(s) 101, 109, 172, 1090
Bsu15I ATCGAT 1 cut(s) 412
BsuRI GGCC 1 cut(s) 781
BsuTUI ATCGAT 1 cut(s) 412
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 4 cut(s) 177, 723, 894, 981
BtsI GCAGTG 3 cut(s) 171, 455, 670
BtsIMutI CAGTG 5 cut(s) 171, 199, 455, 670, 1008
CciI TCATGA 3 cut(s) 559, 859, 1111
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 1 cut(s) 779
Cfr42I CCGCGG 1 cut(s) 256
ClaI ATCGAT 1 cut(s) 412
CseI GACGC 1 cut(s) 1097
Csp6I GTAC 3 cut(s) 6, 139, 1183
CviAII CATG 5 cut(s) 305, 560, 701, 860, 1112
CviQI GTAC 3 cut(s) 6, 139, 1183
DdeI CTNAG 2 cut(s) 1019, 1167
DpnI GATC 6 cut(s) 103, 111, 174, 411, 966, 1092
DpnII GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
DraI TTTAAA 1 cut(s) 472
Eam1104I CTCTTC 1 cut(s) 797
EarI CTCTTC 1 cut(s) 797
Eco130I CCWWGG 2 cut(s) 744, 993
Eco24I GRGCYC 1 cut(s) 679
Eco32I GATATC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 668
EcoRII CCWGG 4 cut(s) 224, 712, 960, 970
EcoRV GATATC 1 cut(s) 707
EcoT14I CCWWGG 2 cut(s) 744, 993
EcoT38I GRGCYC 1 cut(s) 679
ErhI CCWWGG 2 cut(s) 744, 993
FaeI CATG 5 cut(s) 308, 563, 704, 863, 1115
FaqI GGGAC 1 cut(s) 333
FatI CATG 5 cut(s) 304, 559, 700, 859, 1111
FauI CCCGC 1 cut(s) 208
FauNDI CATATG 1 cut(s) 784
FblI GTMKAC 2 cut(s) 437, 989
Fnu4HI GCNGC 3 cut(s) 35, 38, 618
FokI GGATG 4 cut(s) 164, 730, 901, 988
FriOI GRGCYC 1 cut(s) 679
Fsp4HI GCNGC 3 cut(s) 35, 38, 618
FspI TGCGCA 1 cut(s) 461
GlaI GCGC 1 cut(s) 461
GluI GCNGC 3 cut(s) 35, 38, 618
GsuI CTGGAG 2 cut(s) 696, 1196
HaeIII GGCC 1 cut(s) 781
HgaI GACGC 1 cut(s) 1097
HhaI GCGC 1 cut(s) 462
Hin1I GRCGYC 1 cut(s) 1108
Hin1II CATG 5 cut(s) 308, 563, 704, 863, 1115
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 1026
HinfI GANTC 4 cut(s) 512, 871, 1048, 1202
HphI GGTGA 3 cut(s) 959, 1043, 1139
Hpy166II GTNNAC 3 cut(s) 438, 990, 1122
Hpy188I TCNGA 7 cut(s) 364, 604, 876, 920, 1020, 1201, 1207
Hpy188III TCNNGA 8 cut(s) 99, 105, 497, 560, 860, 868, 1112, 1175
Hpy8I GTNNAC 3 cut(s) 438, 990, 1122
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 3 cut(s) 87, 880, 1012
HpyCH4IV ACGT 1 cut(s) 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 386, 766
HpyF3I CTNAG 2 cut(s) 1019, 1167
HpySE526I ACGT 1 cut(s) 116
Hsp92I GRCGYC 1 cut(s) 1108
Hsp92II CATG 5 cut(s) 308, 563, 704, 863, 1115
HspAI GCGC 1 cut(s) 460
KpnI GGTACC 1 cut(s) 9
KspI CCGCGG 1 cut(s) 256
Kzo9I GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
LmnI GCTCC 2 cut(s) 246, 1177
Lsp1109I GCAGC 3 cut(s) 46, 49, 629
LweI GCATC 3 cut(s) 104, 320, 544
MaeII ACGT 1 cut(s) 116
MaeIII GTNAC 3 cut(s) 194, 793, 1127
MalI GATC 6 cut(s) 103, 111, 174, 411, 966, 1092
MboI GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
MboII GAAGA 3 cut(s) 377, 380, 814
MflI RGATCY 4 cut(s) 101, 109, 172, 1090
MhlI GDGCHC 1 cut(s) 679
MluCI AATT 6 cut(s) 125, 357, 597, 628, 733, 1057
MlyI GAGTC 2 cut(s) 521, 1196
MseI TTAA 7 cut(s) 128, 338, 384, 471, 696, 725, 750
MslI CAYNNNNRTG 1 cut(s) 1136
MspA1I CMGCKG 2 cut(s) 255, 620
MspR9I CCNGG 4 cut(s) 226, 714, 962, 972
MvaI CCWGG 4 cut(s) 226, 714, 962, 972
MvnI CGCG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 386, 766
NdeI CATATG 1 cut(s) 784
NdeII GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
NlaIII CATG 5 cut(s) 308, 563, 704, 863, 1115
NlaIV GGNNCC 1 cut(s) 7
NmuCI GTSAC 3 cut(s) 194, 793, 1127
NsbI TGCGCA 1 cut(s) 461
NspV TTCGAA 1 cut(s) 355
PagI TCATGA 3 cut(s) 559, 859, 1111
PasI CCCWGGG 1 cut(s) 971
PfeI GAWTC 2 cut(s) 871, 1048
PfoI TCCNGGA 1 cut(s) 960
PkrI GCNGC 3 cut(s) 36, 39, 619
PleI GAGTC 2 cut(s) 520, 1196
PpsI GAGTC 2 cut(s) 520, 1196
PshBI ATTAAT 2 cut(s) 128, 384
PsiI TTATAA 1 cut(s) 1068
Psp6I CCWGG 4 cut(s) 224, 712, 960, 970
PspGI CCWGG 4 cut(s) 224, 712, 960, 970
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 1 cut(s) 779
PsuI RGATCY 4 cut(s) 101, 109, 172, 1090
PvuII CAGCTG 1 cut(s) 620
RsaI GTAC 3 cut(s) 7, 140, 1184
RsaNI GTAC 3 cut(s) 6, 139, 1183
RseI CAYNNNNRTG 1 cut(s) 1136
SacII CCGCGG 1 cut(s) 256
SalI GTCGAC 1 cut(s) 436
SaqAI TTAA 7 cut(s) 128, 338, 384, 471, 696, 725, 750
SatI GCNGC 3 cut(s) 35, 38, 618
Sau3AI GATC 6 cut(s) 101, 109, 172, 409, 964, 1090
Sau96I GGNCC 1 cut(s) 779
SchI GAGTC 2 cut(s) 521, 1196
ScrFI CCNGG 4 cut(s) 226, 714, 962, 972
SduI GDGCHC 1 cut(s) 679
SfaNI GCATC 3 cut(s) 104, 320, 544
Sfr303I CCGCGG 1 cut(s) 256
SfuI TTCGAA 1 cut(s) 355
SgrBI CCGCGG 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 1136
Sse9I AATT 6 cut(s) 125, 357, 597, 628, 733, 1057
SsiI CCGC 4 cut(s) 201, 253, 255, 274
SspI AATATT 1 cut(s) 647
StyD4I CCNGG 4 cut(s) 224, 712, 960, 970
StyI CCWWGG 2 cut(s) 744, 993
TaaI ACNGT 3 cut(s) 87, 880, 1012
TaiI ACGT 1 cut(s) 119
TaqI TCGA 3 cut(s) 355, 412, 437
TasI AATT 6 cut(s) 125, 357, 597, 628, 733, 1057
TatI WGTACW 2 cut(s) 138, 1182
TfiI GAWTC 2 cut(s) 871, 1048
Tru1I TTAA 7 cut(s) 128, 338, 384, 471, 696, 725, 750
Tru9I TTAA 7 cut(s) 128, 338, 384, 471, 696, 725, 750
TscAI CASTG 5 cut(s) 171, 199, 462, 670, 1015
TseFI GTSAC 3 cut(s) 194, 793, 1127
TseI GCWGC 3 cut(s) 34, 37, 617
Tsp45I GTSAC 3 cut(s) 194, 793, 1127
TspDTI ATGAA 3 cut(s) 44, 576, 848
TspGWI ACGGA 1 cut(s) 199
TspRI CASTG 5 cut(s) 171, 199, 462, 670, 1015
VspI ATTAAT 2 cut(s) 128, 384
XapI RAATTY 3 cut(s) 357, 733, 1057
XmiI GTMKAC 2 cut(s) 437, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.