FvH4_3g11940
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0014554
Physical Location & Seq
Forward (+)
7054165 .. 7056877
2713 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g11940.t1

Sequence Viewer

Length: 1779 bp
ATGTTAATGAATAGATTCTCCAAAAGGGTATTGAAAATGATTGCGCAGGTCAACAATCTAGTACTCTATGCAAAACCTGTTCATGAAAAAACCACTTCTATGCAAAACCCATCTTTTGTTTCCATTCAAGTTCGATGCTTTTCGAGTTCTAGGCTTACCCATCAGCCAAAGGCATCTCTTTCTGATTCAACCCAAGTGGTCACTTCTCCTTTTGCTAACCGGGTTTCTAGAACTGCTAGAACCGAGGGTCAGGAGGCCCTTTTCGATTACCTGCATTGTACTCGAAGCTTCGGCTTCACTGATGCAGAGCATATTAGCAAGAACTCCCCTAAGTTTCTTGAGAATTTGCTCTCCAAGATTGATTGTGAGAAAGAGGTTGCGAGTCTTTTGAGAAGGTTCCTTCGCTATAATCCGATTAATGAGTTTGAGCCGTTCTTTGAGAGCTTGGGTTTGAGCCCATCTGAGCTGCCATTGCTTCTACCAAGACACTTGATGTATCTGAGTGATGATCCTGTTATGTTTGAAAATTTTCAAGCTTTATGTGATTATGGAATACCCCGGAGTAACATTGGTAGGATGTATAAGGAGGCAAGGGAGATATTTGGATATGACTGTGGAGTATTGACTTCAAAGCTTCAAGCTTATGAGTATTTGGGGTTAAGCAAAGGCACAGTTGTTAAGCTTGTTAGTTGTTGCCCGTGGCTTTTGATTGGTGGTGTTAACAATGAACTTGTCAAGTTTCTTGAAAAGTTGAAGTATTTAGGCCTTGGAATGGATTGGATTGGCGGGTATGCATCAGATAACTGCACGTATAACTGGAACAGAATGCTTGAGACAATGGATTTTCTAGATAATGTTGGTTATACAAAGCAGCAGATGTGTAGTTTGTTTGAAAGAAATCCTGCATTATTGTTAGAAGGTTCTGGGAAGAATGTCTATGTGTTGTTTGGCCGGTTACTCAAATTGGGTCTTGAAATGAATGAGGTTTATTCATTGTTTATGCAATATCCACAGGTCTTGTCAGTTAAGTCCACAAGATATCTTTTGCAGGCACTAGACTATTTGATTGAGGTAGGAATGGGCACGGATGAGATTGCAGATGTTGTAGTCAGTGACTTGGAATTTCTGAGCTCCTCTCGGCTGAAAAGACCCAGTACTGTACGTAGAGAATTAAAGGTTGGAAGAGATGGTCTGCTGCAAGTTATAAGGGAAGACCCAAGGAAGTTGTTGAGATTGGCTTCAAAATCTAAAGCTACAACCAGCAAGCAAGTAGTATCTCAAGTTCCTTATAATCATCTAGAGAAAACATCATTCTTGATGAGATTGGGTTATGCCGAAAACTCAGAGGAGATGATTAAAGCTTTAAAAAAGTTCAGGGGTAGAGGTGATCAGTTACAGGAGAGGTTCGATTGTCTGGTAGAAGCTGGCTTAGATTGCAATGTTGTGATGAACATGATAAAACAAGCACCCATGGTCCTTAACCAGAGTAAAGACATGATTGTGAAGAAGATAGCTTGCCTAACAAGCTGTATAGGTTATCCACTGGAATCATTGGAGGCATTCCCGGCATATTTATGTTATGACATGGACAGGATCAATCTTAGATTCTCAATGTATTCGTGGCTAAGGGAGAAACGTGCAGCAAAGCCTATGTTGTCATTGAGCACTCTTCTTGCATGCTCAGATGTACGATTTGCAAAATACTATGTAGACATTCATCCTGAAGGTCCAATCATGTGGGAAAGTTTAAAGAAGCAAAAGAAGCTAAGGGCCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

593

Amino Acids

67.82

Weight (kDa)

9.01

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
mTERF PF02536 280 - 510 1.9e-18 mTERF
mTERF PF02536 462 - 566 2.6e-11 mTERF
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19650 AT4G19650
fragaria_vesca FvH4_3g11940
malus_domestica MD10G1236900.v1.1
prunus_persica Prupe.4G107400_v2.0.a1 Prupe.4G107400_v2.0.a1
pyrus_communis pycom10g19810
rosa_chinensis RchiOBHm_Chr5g0019521
rosa_laevigata RLG00000032452
rosa_multiflora Rmu_sc0002759.1_g000049
rosa_roxburghii Rroxscaffold_1G00058540
rosa_rugosa Rorug05G0051500
rosa_samantha Rh5AG142300 Rh5BG140700 Rh5CG152800 Rh5DG141400
rosa_wichuraiana Rw5G012590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1205, 1290
Acc16I TGCGCA 1 cut(s) 45
Acc36I ACCTGC 2 cut(s) 37, 279
AccI GTMKAC 1 cut(s) 1710
AciI CCGC 1 cut(s) 786
AclWI GGATC 2 cut(s) 503, 1601
AcoI YGGCCR 1 cut(s) 949
AcsI RAATTY 3 cut(s) 343, 526, 1121
AcuI CTGAAG 1 cut(s) 1743
AfaI GTAC 5 cut(s) 63, 280, 1156, 1161, 1689
AfiI CCNNNNNNNGG 1 cut(s) 772
AjuI GAANNNNNNNTTGG 2 cut(s) 1161, 1193
Alw21I GWGCWC 2 cut(s) 1133, 1667
Alw26I GTCTC 1 cut(s) 827
AlwI GGATC 2 cut(s) 503, 1601
AoxI GGCC 4 cut(s) 255, 763, 949, 1770
ApeKI GCWGC 4 cut(s) 466, 871, 1195, 1640
ApoI RAATTY 3 cut(s) 343, 526, 1121
AseI ATTAAT 1 cut(s) 417
Asp700I GAANNNNTTC 2 cut(s) 14, 528
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 4 cut(s) 256, 1474, 1727, 1770
AsuC2I CCSGG 3 cut(s) 221, 559, 1565
AsuHPI GGTGA 1 cut(s) 1397
AvaII GGWCC 2 cut(s) 1474, 1727
BaeGI GKGCMC 1 cut(s) 1085
BanII GRGCYC 2 cut(s) 458, 1133
BbsI GAAGAC 1 cut(s) 1218
Bbv12I GWGCWC 2 cut(s) 1133, 1667
BbvI GCAGC 4 cut(s) 453, 883, 1182, 1652
BccI CCATC 4 cut(s) 118, 168, 466, 1181
BceAI ACGGC 1 cut(s) 415
BcgI CGANNNNNNTGC 2 cut(s) 263, 297
BclI TGATCA 1 cut(s) 1387
BcnI CCSGG 3 cut(s) 221, 559, 1565
BcoDI GTCTC 1 cut(s) 827
BfaI CTAG 7 cut(s) 59, 150, 228, 237, 848, 1055, 1298
BfuAI ACCTGC 2 cut(s) 37, 279
BisI GCNGC 4 cut(s) 467, 872, 1196, 1641
BlsI GCNGC 4 cut(s) 468, 873, 1197, 1642
BmcAI AGTACT 2 cut(s) 63, 1156
Bme1390I CCNGG 3 cut(s) 221, 559, 1565
Bme18I GGWCC 2 cut(s) 1474, 1727
BmgT120I GGNCC 4 cut(s) 256, 1474, 1727, 1770
BmiI GGNNCC 1 cut(s) 398
BmrFI CCNGG 3 cut(s) 221, 559, 1565
BmrI ACTGGG 1 cut(s) 1146
BmsI GCATC 4 cut(s) 125, 182, 292, 803
BmuI ACTGGG 1 cut(s) 1146
BpiI GAAGAC 1 cut(s) 1218
BplI GAGNNNNNCTC 2 cut(s) 1120, 1152
Bpu10I CCTNAGC 2 cut(s) 1625, 1766
BpuEI CTTGAG 3 cut(s) 359, 851, 1263
BpuMI CCSGG 3 cut(s) 221, 559, 1565
BsaAI YACGTR 2 cut(s) 810, 1163
BsaJI CCNNGG 6 cut(s) 243, 557, 698, 766, 1217, 1470
Bsc4I CCNNNNNNNGG 1 cut(s) 772
Bse118I RCCGGY 1 cut(s) 951
Bse1I ACTGG 3 cut(s) 821, 1152, 1548
Bse3DI GCAATG 2 cut(s) 470, 1444
BseDI CCNNGG 6 cut(s) 243, 557, 698, 766, 1217, 1470
BseGI GGATG 3 cut(s) 582, 1093, 1717
BseLI CCNNNNNNNGG 1 cut(s) 772
BseMI GCAATG 2 cut(s) 470, 1444
BseMII CTCAG 5 cut(s) 453, 491, 1118, 1356, 1695
BseNI ACTGG 3 cut(s) 821, 1152, 1548
BseRI GAGGAG 2 cut(s) 1123, 1361
BseSI GKGCMC 1 cut(s) 1085
BseXI GCAGC 4 cut(s) 453, 883, 1182, 1652
BsgI GTGCAG 2 cut(s) 790, 1659
BshFI GGCC 4 cut(s) 257, 765, 951, 1772
BsiHKAI GWGCWC 2 cut(s) 1133, 1667
BsiSI CCGG 4 cut(s) 220, 559, 952, 1565
BslI CCNNNNNNNGG 1 cut(s) 772
BsmAI GTCTC 1 cut(s) 827
BsmI GAATGC 2 cut(s) 831, 1559
BsnI GGCC 4 cut(s) 257, 765, 951, 1772
Bsp1286I GDGCHC 4 cut(s) 458, 1085, 1133, 1667
Bsp143I GATC 3 cut(s) 508, 1387, 1593
Bsp19I CCATGG 1 cut(s) 1470
BspACI CCGC 1 cut(s) 786
BspANI GGCC 4 cut(s) 257, 765, 951, 1772
BspCNI CTCAG 5 cut(s) 454, 492, 1119, 1355, 1694
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 398
BspMI ACCTGC 2 cut(s) 37, 279
BspPI GGATC 2 cut(s) 503, 1601
BsrDI GCAATG 2 cut(s) 470, 1444
BsrFI RCCGGY 1 cut(s) 951
BsrI ACTGG 3 cut(s) 821, 1152, 1548
BssAI RCCGGY 1 cut(s) 951
BssECI CCNNGG 6 cut(s) 243, 557, 698, 766, 1217, 1470
BssMI GATC 3 cut(s) 508, 1387, 1593
BssT1I CCWWGG 3 cut(s) 766, 1217, 1470
Bst4CI ACNGT 3 cut(s) 614, 673, 1159
Bst6I CTCTTC 2 cut(s) 1177, 1674
BstBAI YACGTR 2 cut(s) 810, 1163
BstC8I GCNNGC 5 cut(s) 1050, 1265, 1426, 1516, 1678
BstDSI CCRYGG 2 cut(s) 698, 1470
BstF5I GGATG 3 cut(s) 582, 1093, 1717
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 511, 1390, 1596
BstMAI GTCTC 1 cut(s) 827
BstMBI GATC 3 cut(s) 508, 1387, 1593
BstMWI GCNNNNNNNGC 5 cut(s) 472, 1434, 1524, 1565, 1762
BstNSI RCATGY 1 cut(s) 1680
BstSCI CCNGG 3 cut(s) 219, 557, 1563
BstSLI GKGCMC 1 cut(s) 1085
BstSNI TACGTA 1 cut(s) 1163
BstV1I GCAGC 4 cut(s) 453, 883, 1182, 1652
BstV2I GAAGAC 1 cut(s) 1218
BstXI CCANNNNNNTGG 1 cut(s) 1737
BsuRI GGCC 4 cut(s) 257, 765, 951, 1772
BtgI CCRYGG 2 cut(s) 698, 1470
BtsCI GGATG 3 cut(s) 582, 1093, 1717
BtsIMutI CAGTG 3 cut(s) 297, 1117, 1541
BveI ACCTGC 2 cut(s) 37, 279
Cac8I GCNNGC 5 cut(s) 1050, 1265, 1426, 1516, 1678
CciI TCATGA 1 cut(s) 82
CfoI GCGC 1 cut(s) 46
Cfr10I RCCGGY 1 cut(s) 951
Cfr13I GGNCC 4 cut(s) 256, 1474, 1727, 1770
Csp6I GTAC 5 cut(s) 62, 279, 1155, 1160, 1688
CspCI CAANNNNNGTGG 4 cut(s) 177, 212, 999, 1034
CviAII CATG 7 cut(s) 83, 1453, 1471, 1495, 1585, 1677, 1735
CviQI GTAC 5 cut(s) 62, 279, 1155, 1160, 1688
DpnI GATC 3 cut(s) 510, 1389, 1595
DpnII GATC 3 cut(s) 508, 1387, 1593
DraI TTTAAA 2 cut(s) 1365, 1749
EaeI YGGCCR 1 cut(s) 949
Eam1104I CTCTTC 2 cut(s) 1177, 1674
EarI CTCTTC 2 cut(s) 1177, 1674
Ecl136II GAGCTC 1 cut(s) 1131
Eco105I TACGTA 1 cut(s) 1163
Eco130I CCWWGG 3 cut(s) 766, 1217, 1470
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 2 cut(s) 458, 1133
Eco32I GATATC 1 cut(s) 1040
Eco47I GGWCC 2 cut(s) 1474, 1727
Eco53kI GAGCTC 1 cut(s) 1131
Eco57I CTGAAG 1 cut(s) 1743
EcoICRI GAGCTC 1 cut(s) 1131
EcoO109I RGGNCCY 1 cut(s) 256
EcoRV GATATC 1 cut(s) 1040
EcoT14I CCWWGG 3 cut(s) 766, 1217, 1470
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 2 cut(s) 458, 1133
ErhI CCWWGG 3 cut(s) 766, 1217, 1470
FaeI CATG 7 cut(s) 86, 1456, 1474, 1498, 1588, 1680, 1738
FatI CATG 7 cut(s) 82, 1452, 1470, 1494, 1584, 1676, 1734
FauI CCCGC 1 cut(s) 779
FbaI TGATCA 1 cut(s) 1387
FblI GTMKAC 1 cut(s) 1710
Fnu4HI GCNGC 4 cut(s) 467, 872, 1196, 1641
FokI GGATG 3 cut(s) 589, 1100, 1704
FriOI GRGCYC 2 cut(s) 458, 1133
Fsp4HI GCNGC 4 cut(s) 467, 872, 1196, 1641
FspBI CTAG 7 cut(s) 59, 150, 228, 237, 848, 1055, 1298
FspI TGCGCA 1 cut(s) 45
GlaI GCGC 1 cut(s) 45
GluI GCNGC 4 cut(s) 467, 872, 1196, 1641
HaeIII GGCC 4 cut(s) 257, 765, 951, 1772
HapII CCGG 4 cut(s) 220, 559, 952, 1565
HhaI GCGC 1 cut(s) 46
Hin1II CATG 7 cut(s) 86, 1456, 1474, 1498, 1588, 1680, 1738
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 2 cut(s) 52, 721
HindII GTYRAC 2 cut(s) 52, 721
HindIII AAGCTT 6 cut(s) 286, 534, 632, 639, 680, 1359
HinfI GANTC 5 cut(s) 15, 185, 382, 1547, 1605
HpaI GTTAAC 1 cut(s) 721
HpaII CCGG 4 cut(s) 220, 559, 952, 1565
HphI GGTGA 1 cut(s) 1397
Hpy166II GTNNAC 4 cut(s) 52, 721, 1032, 1711
Hpy188I TCNGA 8 cut(s) 184, 414, 463, 501, 799, 1128, 1345, 1684
Hpy8I GTNNAC 4 cut(s) 52, 721, 1032, 1711
HpyAV CCTTC 4 cut(s) 387, 410, 911, 1718
HpyCH4III ACNGT 3 cut(s) 614, 673, 1159
HpyCH4IV ACGT 3 cut(s) 809, 1162, 1636
HpyF10VI GCNNNNNNNGC 5 cut(s) 472, 1434, 1524, 1565, 1762
HpySE526I ACGT 3 cut(s) 809, 1162, 1636
Hsp92II CATG 7 cut(s) 86, 1456, 1474, 1498, 1588, 1680, 1738
HspAI GCGC 1 cut(s) 44
Ksp22I TGATCA 1 cut(s) 1387
KspAI GTTAAC 1 cut(s) 721
Kzo9I GATC 3 cut(s) 508, 1387, 1593
LmnI GCTCC 1 cut(s) 1136
Lsp1109I GCAGC 4 cut(s) 453, 883, 1182, 1652
LweI GCATC 4 cut(s) 125, 182, 292, 803
MaeI CTAG 7 cut(s) 59, 150, 228, 237, 848, 1055, 1298
MaeII ACGT 3 cut(s) 809, 1162, 1636
MaeIII GTNAC 5 cut(s) 199, 563, 954, 1112, 1392
MalI GATC 3 cut(s) 510, 1389, 1595
MboI GATC 3 cut(s) 508, 1387, 1593
MboII GAAGA 6 cut(s) 940, 1194, 1223, 1516, 1519, 1661
MhlI GDGCHC 4 cut(s) 458, 1085, 1133, 1667
MluCI AATT 5 cut(s) 343, 526, 962, 1121, 1169
MlyI GAGTC 1 cut(s) 391
MmeI TCCRAC 1 cut(s) 1159
Mph1103I ATGCAT 1 cut(s) 796
MroXI GAANNNNTTC 2 cut(s) 14, 528
MslI CAYNNNNRTG 3 cut(s) 98, 1499, 1573
MspI CCGG 4 cut(s) 220, 559, 952, 1565
MspR9I CCNGG 3 cut(s) 221, 559, 1565
Mva1269I GAATGC 2 cut(s) 831, 1559
MwoI GCNNNNNNNGC 5 cut(s) 472, 1434, 1524, 1565, 1762
NciI CCSGG 3 cut(s) 221, 559, 1565
NcoI CCATGG 1 cut(s) 1470
NdeII GATC 3 cut(s) 508, 1387, 1593
NlaIII CATG 7 cut(s) 86, 1456, 1474, 1498, 1588, 1680, 1738
NlaIV GGNNCC 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 1117
NmuCI GTSAC 2 cut(s) 199, 1112
NsbI TGCGCA 1 cut(s) 45
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 1 cut(s) 1680
PaeI GCATGC 1 cut(s) 1680
PagI TCATGA 1 cut(s) 82
PceI AGGCCT 1 cut(s) 765
PctI GAATGC 2 cut(s) 831, 1559
PdmI GAANNNNTTC 2 cut(s) 14, 528
PfeI GAWTC 4 cut(s) 15, 185, 1547, 1605
PkrI GCNGC 4 cut(s) 468, 873, 1197, 1642
PleI GAGTC 1 cut(s) 390
PpsI GAGTC 1 cut(s) 390
Ppu21I YACGTR 2 cut(s) 810, 1163
PshBI ATTAAT 1 cut(s) 417
PsiI TTATAA 2 cut(s) 1205, 1290
Psp124BI GAGCTC 1 cut(s) 1133
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 4 cut(s) 256, 1474, 1727, 1770
PsrI GAACNNNNNNTAC 2 cut(s) 1266, 1298
RsaI GTAC 5 cut(s) 63, 280, 1156, 1161, 1689
RsaNI GTAC 5 cut(s) 62, 279, 1155, 1160, 1688
RseI CAYNNNNRTG 3 cut(s) 98, 1499, 1573
SacI GAGCTC 1 cut(s) 1133
SatI GCNGC 4 cut(s) 467, 872, 1196, 1641
Sau3AI GATC 3 cut(s) 508, 1387, 1593
Sau96I GGNCC 4 cut(s) 256, 1474, 1727, 1770
ScaI AGTACT 2 cut(s) 63, 1156
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 3 cut(s) 221, 559, 1565
SduI GDGCHC 4 cut(s) 458, 1085, 1133, 1667
SfaNI GCATC 4 cut(s) 125, 182, 292, 803
SinI GGWCC 2 cut(s) 1474, 1727
SmiMI CAYNNNNRTG 3 cut(s) 98, 1499, 1573
SmlI CTYRAG 3 cut(s) 338, 830, 1278
SmoI CTYRAG 3 cut(s) 338, 830, 1278
SnaBI TACGTA 1 cut(s) 1163
SphI GCATGC 1 cut(s) 1680
Sse9I AATT 5 cut(s) 343, 526, 962, 1121, 1169
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 1 cut(s) 786
SspMI CTAG 7 cut(s) 59, 150, 228, 237, 848, 1055, 1298
SstI GAGCTC 1 cut(s) 1133
StuI AGGCCT 1 cut(s) 765
StyD4I CCNGG 3 cut(s) 219, 557, 1563
StyI CCWWGG 3 cut(s) 766, 1217, 1470
TaaI ACNGT 3 cut(s) 614, 673, 1159
TaiI ACGT 3 cut(s) 812, 1165, 1639
TaqI TCGA 5 cut(s) 133, 143, 264, 283, 1407
TasI AATT 5 cut(s) 343, 526, 962, 1121, 1169
TatI WGTACW 3 cut(s) 61, 278, 1154
TfiI GAWTC 4 cut(s) 15, 185, 1547, 1605
TscAI CASTG 3 cut(s) 304, 1117, 1548
TseFI GTSAC 2 cut(s) 199, 1112
TseI GCWGC 4 cut(s) 466, 871, 1195, 1640
Tsp45I GTSAC 2 cut(s) 199, 1112
TspDTI ATGAA 8 cut(s) 23, 71, 99, 741, 981, 992, 1463, 1706
TspGWI ACGGA 1 cut(s) 1100
TspRI CASTG 3 cut(s) 304, 1117, 1548
VpaK11BI GGWCC 2 cut(s) 1474, 1727
VspI ATTAAT 1 cut(s) 417
XapI RAATTY 3 cut(s) 343, 526, 1121
XbaI TCTAGA 3 cut(s) 227, 847, 1297
XceI RCATGY 1 cut(s) 1680
XmiI GTMKAC 1 cut(s) 1710
XmnI GAANNNNTTC 2 cut(s) 14, 528
XspI CTAG 7 cut(s) 59, 150, 228, 237, 848, 1055, 1298
ZrmI AGTACT 2 cut(s) 63, 1156
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.