Prupe.4G107400_v2.0.a1
ERF Family

mTERF

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0014554
Physical Location & Seq
Forward (+)
5610977 .. 5613368
2392 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G107400.1

Sequence Viewer

Length: 1722 bp
ATGATTTCCCAACTCAATCACCTCGTACTCTTCTCGCCTGTCTTTGAAAGAACCACTTTTGTGCAGAACCCATCTTCTGTTTCGCTTAAATTCCAATGCTTTTGCAGTTCTAGACTTACCCATCACTCGAAGGTCTCTGTTATCGAGTCTGCACAATCGCCCAATTCTCCTTTTGCTAACCGGGTTTCTCGAAATGCTAGAACTGAGGCTCAGGCAACCCTTTTTGATTACCTGCATTGCACTCGAAGCTTCAGCTTCACGGATGCAGAGCATATTAGCAAAAACTCCCCAATTTTTCTTCAAAATTTGCTCTCCAACATTGATTCTGAGAAAGATGTTGCACGTTCTTTAACCCGATTTCTTCGCTACAATCCCATTAATGAGTTTGAACCGTTCTTTGAGAGCTTGGGTTTGAGTCCATCTGAGCTCCTATCGTTTCTGCCACGGCACTTGATGTATCTGAGTGATGATTGTGTGCTGACTGATAACGTTCATGCTTTATGTAATTACGGAATCCCCCGTAGTAACATCGGTAAGATGTATAAGGAGGCAAAGGAGATATTTGGATATGACTATGGAGTGTTGGCTCTAAAACTTCAAGCTTATGAAAATTTGGGTATAAGCAAAGCAACAGTTATTAAGCTTGTTAGTTGTTGCCCGTTGCTTTTGGTTGGGGGTGTTAATAGTGACTTTGTCAGGGTTCATGAAAAATTGAAGCGTTTAGGCCTTGGAATGGATTGGATTGGAGGGTATGCATCAGGTAACAGCACATACAACTGGGACAGAATGTTTGATACAATGGATTTTCTTGATAAAGTGGGTTATACGGAGGAGCAAATGTGTGTTTTGTTTGAATTAAATCCTGCATTACTATTAGAAGGGTCTGGAAAGAATGTGTATGTATTGTTTGGCCGGTTACTCAAATTGGGTCTCGAGATGAATGAGGTTTATTCACTTTTTATGCAAAATCCACAGGTCTTGTCAGTTAAGTGCATGAAAAATCTCTTGCTGGCAGTAGATTTTCTGTTTGAGATTGGAATGGGAACAGAAGAGATGGCAGACATTGTAGCCAATGACGTGGAATTTCTGAGTTCATCTAGTTTTAAAAGACCCAAAACTGTTTGTAAAGACTTAAAAGTCAAGAGAGATGGCCTGCTCCAAATGATAAAGGAAGATCCACACAAGGTGTTGACATTGGCTTCAAAGTCCAAAGGTAAAAATCAATTAATATCCCCACTCCCCAGTAAACATATGGAGAAAACTTCATTCTTGGTGAGATTGGGATATATCGAAAACTCAGATGAGATGATGAAAGCTTTGAAAAAATTCAGAGGTAGAGGAGACCAATTACAAGAGAGGTTTGATTGCCTCGTACAAGCTGGCTTGGACTGCAACGTGGTGTCAAACATAGTTAAACAAGCCCCTCATGTTCTTAATCAGAGCAAAGATGTGATTGAAATGAAGATCAGTTGCTTAACAAACTGTTTACGTTATCCACTGGATTCTGTGGTGGCATTCCCAGCATACTTATGTTACGATATGGACAGGATTAATCTTAGATTCTCAATGTATGCGTGGCTAAGGGAGAAAGGTGCAGCAAAGCCTATGTTGTCCTTGAGCACTCTCCTTGCATGTTCAGATGCACGATTTGTAAAATATTATGTGGATGTTCATCCAGAAGGTCCAGCCATGTGGGAAAGTTTTAAAATGCAAAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
mTERF

Protein Analysis

574

Amino Acids

65.0

Weight (kDa)

8.2

Isoelectric Point (pI)

44.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014554)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G19650 AT4G19650
fragaria_vesca FvH4_3g11940
malus_domestica MD10G1236900.v1.1
prunus_persica Prupe.4G107400_v2.0.a1 Prupe.4G107400_v2.0.a1
pyrus_communis pycom10g19810
rosa_chinensis RchiOBHm_Chr5g0019521
rosa_laevigata RLG00000032452
rosa_multiflora Rmu_sc0002759.1_g000049
rosa_roxburghii Rroxscaffold_1G00058540
rosa_rugosa Rorug05G0051500
rosa_samantha Rh5AG142300 Rh5BG140700 Rh5CG152800 Rh5DG141400
rosa_wichuraiana Rw5G012590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1136
Acc36I ACCTGC 1 cut(s) 240
AclI AACGTT 1 cut(s) 489
AclWI GGATC 1 cut(s) 1169
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 5 cut(s) 89, 304, 610, 1082, 1325
AcuI CTGAAG 1 cut(s) 235
AdeI CACNNNGTG 1 cut(s) 1186
AfaI GTAC 2 cut(s) 27, 1374
AfiI CCNNNNNNNGG 1 cut(s) 733
AgsI TTSAA 9 cut(s) 47, 302, 389, 599, 715, 854, 1203, 1321, 1457
AjiI CACGTC 1 cut(s) 1078
AleI CACNNNNGTG 1 cut(s) 59
AluBI AGCT 9 cut(s) 249, 255, 405, 427, 602, 643, 1316, 1379, 1719
AluI AGCT 9 cut(s) 249, 255, 405, 427, 602, 643, 1316, 1379, 1719
Alw21I GWGCWC 2 cut(s) 429, 1622
Alw26I GTCTC 3 cut(s) 139, 935, 1335
AlwI GGATC 1 cut(s) 1169
Ama87I CYCGRG 1 cut(s) 932
AoxI GGCC 3 cut(s) 724, 910, 1150
ApeKI GCWGC 1 cut(s) 1595
ApoI RAATTY 5 cut(s) 89, 304, 610, 1082, 1325
ArsI GACNNNNNNTTYG 2 cut(s) 773, 805
AseI ATTAAT 3 cut(s) 378, 1226, 1551
Asp700I GAANNNNTTC 1 cut(s) 1325
AspS9I GGNCC 1 cut(s) 1682
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 11, 1285
AvaI CYCGRG 1 cut(s) 932
AvaII GGWCC 1 cut(s) 1682
BanII GRGCYC 1 cut(s) 429
Bbv12I GWGCWC 2 cut(s) 429, 1622
BbvI GCAGC 1 cut(s) 1607
BccI CCATC 5 cut(s) 79, 129, 427, 1048, 1142
BceAI ACGGC 1 cut(s) 461
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 3 cut(s) 139, 935, 1335
BfaI CTAG 3 cut(s) 111, 198, 1098
BfuAI ACCTGC 1 cut(s) 240
BisI GCNGC 1 cut(s) 1596
BlsI GCNGC 1 cut(s) 1597
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 1 cut(s) 1682
BmeT110I CYCGRG 1 cut(s) 932
BmgBI CACGTC 1 cut(s) 1078
BmgT120I GGNCC 1 cut(s) 1682
BmrFI CCNGG 1 cut(s) 182
BmrI ACTGGG 2 cut(s) 787, 1236
BmsI GCATC 3 cut(s) 253, 764, 1630
BmuI ACTGGG 2 cut(s) 787, 1236
Bpu10I CCTNAGC 2 cut(s) 210, 1580
BpuEI CTTGAG 1 cut(s) 1636
BpuMI CCSGG 1 cut(s) 182
BsaBI GATNNNNATC 1 cut(s) 1671
BsaI GGTCTC 3 cut(s) 139, 935, 1335
BsaJI CCNNGG 2 cut(s) 443, 727
BsaXI ACNNNNNCTCC 2 cut(s) 824, 854
Bsc4I CCNNNNNNNGG 1 cut(s) 733
Bse118I RCCGGY 1 cut(s) 912
Bse1I ACTGG 3 cut(s) 782, 1242, 1503
Bse3DI GCAATG 1 cut(s) 235
Bse8I GATNNNNATC 1 cut(s) 1671
BseDI CCNNGG 2 cut(s) 443, 727
BseGI GGATG 3 cut(s) 268, 1672, 1672
BseJI GATNNNNATC 1 cut(s) 1671
BseLI CCNNNNNNNGG 1 cut(s) 733
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 7 cut(s) 195, 224, 318, 414, 452, 1079, 1311
BseNI ACTGG 3 cut(s) 782, 1242, 1503
BseRI GAGGAG 2 cut(s) 845, 1353
BseXI GCAGC 1 cut(s) 1607
BseYI CCCAGC 1 cut(s) 1519
BsgI GTGCAG 3 cut(s) 83, 135, 1614
BshFI GGCC 3 cut(s) 726, 912, 1152
BsiHKAI GWGCWC 2 cut(s) 429, 1622
BsiHKCI CYCGRG 1 cut(s) 932
BsiSI CCGG 2 cut(s) 181, 913
BslFI GGGAC 1 cut(s) 794
BslI CCNNNNNNNGG 1 cut(s) 733
BsmAI GTCTC 3 cut(s) 139, 935, 1335
BsmFI GGGAC 1 cut(s) 794
BsmI GAATGC 1 cut(s) 1514
BsnI GGCC 3 cut(s) 726, 912, 1152
Bso31I GGTCTC 3 cut(s) 139, 935, 1335
BsoBI CYCGRG 1 cut(s) 932
Bsp1286I GDGCHC 2 cut(s) 429, 1622
Bsp143I GATC 2 cut(s) 1174, 1464
BspANI GGCC 3 cut(s) 726, 912, 1152
BspCNI CTCAG 7 cut(s) 196, 223, 319, 415, 453, 1080, 1310
BspHI TCATGA 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 240
BspPI GGATC 1 cut(s) 1169
BspTNI GGTCTC 3 cut(s) 139, 935, 1335
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 912
BsrI ACTGG 3 cut(s) 782, 1242, 1503
BssAI RCCGGY 1 cut(s) 912
BssECI CCNNGG 2 cut(s) 443, 727
BssMI GATC 2 cut(s) 1174, 1464
BssT1I CCWWGG 1 cut(s) 727
Bst4CI ACNGT 4 cut(s) 393, 634, 1120, 1484
Bst6I CTCTTC 2 cut(s) 35, 1044
BstC8I GCNNGC 3 cut(s) 1011, 1154, 1381
BstDEI CTNAG 9 cut(s) 204, 210, 327, 423, 461, 1088, 1297, 1556, 1580
BstDSI CCRYGG 1 cut(s) 443
BstF5I GGATG 3 cut(s) 268, 1672, 1672
BstKTI GATC 2 cut(s) 1177, 1467
BstMAI GTCTC 3 cut(s) 139, 935, 1335
BstMBI GATC 2 cut(s) 1174, 1464
BstMWI GCNNNNNNNGC 3 cut(s) 246, 1389, 1520
BstNSI RCATGY 1 cut(s) 1635
BstSCI CCNGG 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 1607
BstX2I RGATCY 1 cut(s) 1174
BstXI CCANNNNNNTGG 2 cut(s) 1078, 1692
BstYI RGATCY 1 cut(s) 1174
BsuRI GGCC 3 cut(s) 726, 912, 1152
BtgI CCRYGG 1 cut(s) 443
BtrI CACGTC 1 cut(s) 1078
BtsCI GGATG 3 cut(s) 268, 1672, 1672
BtsIMutI CAGTG 1 cut(s) 1496
BveI ACCTGC 1 cut(s) 240
Cac8I GCNNGC 3 cut(s) 1011, 1154, 1381
CciI TCATGA 1 cut(s) 703
Cfr10I RCCGGY 1 cut(s) 912
Cfr13I GGNCC 1 cut(s) 1682
Csp6I GTAC 2 cut(s) 26, 1373
CspCI CAANNNNNGTGG 4 cut(s) 432, 467, 960, 995
CviAII CATG 6 cut(s) 494, 704, 994, 1427, 1632, 1690
CviQI GTAC 2 cut(s) 26, 1373
DdeI CTNAG 9 cut(s) 204, 210, 327, 423, 461, 1088, 1297, 1556, 1580
DpnI GATC 2 cut(s) 1176, 1466
DpnII GATC 2 cut(s) 1174, 1464
DraI TTTAAA 2 cut(s) 1105, 1705
DraIII CACNNNGTG 1 cut(s) 1186
DrdI GACNNNNNNGTC 1 cut(s) 1136
DseDI GACNNNNNNGTC 1 cut(s) 1136
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 35, 1044
EarI CTCTTC 2 cut(s) 35, 1044
Ecl136II GAGCTC 1 cut(s) 427
Eco130I CCWWGG 1 cut(s) 727
Eco147I AGGCCT 1 cut(s) 726
Eco24I GRGCYC 1 cut(s) 429
Eco31I GGTCTC 3 cut(s) 139, 935, 1335
Eco47I GGWCC 1 cut(s) 1682
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 235
Eco88I CYCGRG 1 cut(s) 932
EcoICRI GAGCTC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 727
EcoT22I ATGCAT 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 6 cut(s) 497, 707, 997, 1430, 1635, 1693
FalI AAGNNNNNCTT 2 cut(s) 40, 72
FaqI GGGAC 1 cut(s) 794
FatI CATG 6 cut(s) 493, 703, 993, 1426, 1631, 1689
FauNDI CATATG 1 cut(s) 1251
Fnu4HI GCNGC 1 cut(s) 1596
FokI GGATG 3 cut(s) 275, 1659, 1679
FriOI GRGCYC 1 cut(s) 429
Fsp4HI GCNGC 1 cut(s) 1596
FspBI CTAG 3 cut(s) 111, 198, 1098
GluI GCNGC 1 cut(s) 1596
GsaI CCCAGC 1 cut(s) 1523
HaeIII GGCC 3 cut(s) 726, 912, 1152
HapII CCGG 2 cut(s) 181, 913
Hin1II CATG 6 cut(s) 497, 707, 997, 1430, 1635, 1693
HincII GTYRAC 1 cut(s) 1191
HindII GTYRAC 1 cut(s) 1191
HindIII AAGCTT 4 cut(s) 247, 600, 641, 1314
HinfI GANTC 6 cut(s) 146, 323, 415, 513, 1502, 1560
HpaII CCGG 2 cut(s) 181, 913
HphI GGTGA 2 cut(s) 11, 1285
Hpy166II GTNNAC 3 cut(s) 1191, 1247, 1487
Hpy188I TCNGA 8 cut(s) 328, 424, 462, 1089, 1300, 1331, 1440, 1639
Hpy188III TCNNGA 9 cut(s) 111, 189, 704, 809, 885, 932, 934, 1141, 1676
Hpy8I GTNNAC 3 cut(s) 1191, 1247, 1487
HpyAV CCTTC 3 cut(s) 124, 872, 1673
HpyCH4III ACNGT 4 cut(s) 393, 634, 1120, 1484
HpyCH4IV ACGT 5 cut(s) 343, 489, 1077, 1395, 1489
HpyF10VI GCNNNNNNNGC 3 cut(s) 246, 1389, 1520
HpyF3I CTNAG 9 cut(s) 204, 210, 327, 423, 461, 1088, 1297, 1556, 1580
HpySE526I ACGT 5 cut(s) 343, 489, 1077, 1395, 1489
Hsp92II CATG 6 cut(s) 497, 707, 997, 1430, 1635, 1693
Kzo9I GATC 2 cut(s) 1174, 1464
LmnI GCTCC 3 cut(s) 432, 832, 1161
Lsp1109I GCAGC 1 cut(s) 1607
LweI GCATC 3 cut(s) 253, 764, 1630
MaeI CTAG 3 cut(s) 111, 198, 1098
MaeII ACGT 5 cut(s) 343, 489, 1077, 1395, 1489
MaeIII GTNAC 5 cut(s) 524, 686, 761, 915, 1532
MalI GATC 2 cut(s) 1176, 1466
MboI GATC 2 cut(s) 1174, 1464
MboII GAAGA 7 cut(s) 22, 66, 290, 353, 1061, 1184, 1474
MflI RGATCY 1 cut(s) 1174
MhlI GDGCHC 2 cut(s) 429, 1622
MlyI GAGTC 2 cut(s) 155, 424
MmeI TCCRAC 1 cut(s) 339
Mph1103I ATGCAT 1 cut(s) 757
MroXI GAANNNNTTC 1 cut(s) 1325
MslI CAYNNNNRTG 2 cut(s) 59, 1528
MspI CCGG 2 cut(s) 181, 913
MspR9I CCNGG 1 cut(s) 182
Mva1269I GAATGC 1 cut(s) 1514
MwoI GCNNNNNNNGC 3 cut(s) 246, 1389, 1520
NciI CCSGG 1 cut(s) 182
NdeI CATATG 1 cut(s) 1251
NdeII GATC 2 cut(s) 1174, 1464
NlaIII CATG 6 cut(s) 497, 707, 997, 1430, 1635, 1693
NmuCI GTSAC 1 cut(s) 686
NsiI ATGCAT 1 cut(s) 757
NspI RCATGY 1 cut(s) 1635
OliI CACNNNNGTG 1 cut(s) 59
PaeR7I CTCGAG 1 cut(s) 932
PagI TCATGA 1 cut(s) 703
PceI AGGCCT 1 cut(s) 726
PctI GAATGC 1 cut(s) 1514
PdmI GAANNNNTTC 1 cut(s) 1325
PfeI GAWTC 4 cut(s) 323, 513, 1502, 1560
PflFI GACNNNGTC 1 cut(s) 692
PkrI GCNGC 1 cut(s) 1597
PleI GAGTC 2 cut(s) 154, 423
PpsI GAGTC 2 cut(s) 154, 423
PshBI ATTAAT 3 cut(s) 378, 1226, 1551
Psp124BI GAGCTC 1 cut(s) 429
Psp1406I AACGTT 1 cut(s) 489
PspFI CCCAGC 1 cut(s) 1519
PspPI GGNCC 1 cut(s) 1682
PsuI RGATCY 1 cut(s) 1174
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 2 cut(s) 27, 1374
RsaNI GTAC 2 cut(s) 26, 1373
RseI CAYNNNNRTG 2 cut(s) 59, 1528
SacI GAGCTC 1 cut(s) 429
SatI GCNGC 1 cut(s) 1596
Sau3AI GATC 2 cut(s) 1174, 1464
Sau96I GGNCC 1 cut(s) 1682
SchI GAGTC 2 cut(s) 155, 424
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 2 cut(s) 429, 1622
SfaNI GCATC 3 cut(s) 253, 764, 1630
Sfr274I CTCGAG 1 cut(s) 932
SinI GGWCC 1 cut(s) 1682
SlaI CTCGAG 1 cut(s) 932
SmiMI CAYNNNNRTG 2 cut(s) 59, 1528
SmlI CTYRAG 2 cut(s) 932, 1615
SmoI CTYRAG 2 cut(s) 932, 1615
SseBI AGGCCT 1 cut(s) 726
SspI AATATT 1 cut(s) 1658
SspMI CTAG 3 cut(s) 111, 198, 1098
SstI GAGCTC 1 cut(s) 429
StuI AGGCCT 1 cut(s) 726
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 4 cut(s) 393, 634, 1120, 1484
TaiI ACGT 5 cut(s) 346, 492, 1080, 1398, 1492
TaqI TCGA 6 cut(s) 128, 144, 190, 244, 933, 1290
TfiI GAWTC 4 cut(s) 323, 513, 1502, 1560
TscAI CASTG 1 cut(s) 1503
TseFI GTSAC 1 cut(s) 686
TseI GCWGC 1 cut(s) 1595
Tsp45I GTSAC 1 cut(s) 686
TspGWI ACGGA 3 cut(s) 275, 525, 842
TspRI CASTG 1 cut(s) 1503
Tth111I GACNNNGTC 1 cut(s) 692
VpaK11BI GGWCC 1 cut(s) 1682
VspI ATTAAT 3 cut(s) 378, 1226, 1551
XapI RAATTY 5 cut(s) 89, 304, 610, 1082, 1325
XbaI TCTAGA 1 cut(s) 110
XceI RCATGY 1 cut(s) 1635
XcmI CCANNNNNNNNNTGG 1 cut(s) 1249
XhoI CTCGAG 1 cut(s) 932
XmnI GAANNNNTTC 1 cut(s) 1325
XspI CTAG 3 cut(s) 111, 198, 1098
Zsp2I ATGCAT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.