FvH4_3g13250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0018329
Physical Location & Seq
Reverse (-)
7916700 .. 7917053
354 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g13250.t1

Sequence Viewer

Length: 354 bp
ATGGCTAGTGCTGATGCAAAACTACCTACCGTCTTCTTCTTCTTCCTCCTCTATCTGCTTTTTATATTTCACACCACCATGGCTAGAGAGCAGAAGAGCTTCCAAATCCCAACTGTTAGTCATGATTCCTCTAGACATGGAGCTGGAAGATCTATCAGAAGAACTGCCGTGGAATATTCTGCAAGAGGATCACCTGGTACTGGAAGTTCAAATAAGGTTGATTCATTTGCTCATGAGTCAAGTCGAAGTAGAGGATCCAGAGGTCGTCGGAGAAATTCCAAGCGGCAAGAGGAGGTATTCAACGCCGGTGAACATGAAGTTCCAAGCGGTCCAAATCCCATTTCTAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.04

Weight (kDa)

11.07

Isoelectric Point (pI)

62.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34925
fragaria_vesca FvH4_3g13250
pyrus_communis pycom05g22020 pycom10g18950
rosa_chinensis RchiOBHm_Chr5g0021721
rosa_roxburghii Rroxscaffold_1G00057000
rosa_samantha Rh5AG157200 Rh5BG156900 Rh5CG171000 Rh5DG157000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 283, 327
AclWI GGATC 3 cut(s) 196, 249, 262
AcsI RAATTY 1 cut(s) 274
AfaI GTAC 1 cut(s) 199
AfiI CCNNNNNNNGG 1 cut(s) 200
AgsI TTSAA 2 cut(s) 210, 301
AjnI CCWGG 1 cut(s) 193
AjuI GAANNNNNNNTTGG 1 cut(s) 325
AluBI AGCT 2 cut(s) 99, 143
AluI AGCT 2 cut(s) 99, 143
AlwI GGATC 3 cut(s) 196, 249, 262
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 329
AsuHPI GGTGA 2 cut(s) 183, 320
AvaII GGWCC 1 cut(s) 329
BamHI GGATCC 1 cut(s) 254
BbsI GAAGAC 1 cut(s) 25
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 1 cut(s) 195
BfaI CTAG 3 cut(s) 6, 84, 132
BglII AGATCT 1 cut(s) 149
BisI GCNGC 1 cut(s) 284
BlsI GCNGC 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 329
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 25
BsaJI CCNNGG 2 cut(s) 78, 168
Bsc4I CCNNNNNNNGG 1 cut(s) 200
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 78, 168
BseLI CCNNNNNNNGG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 38, 305
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 200
Bsp143I GATC 3 cut(s) 149, 188, 254
Bsp19I CCATGG 1 cut(s) 78
BspACI CCGC 2 cut(s) 283, 327
BspHI TCATGA 2 cut(s) 121, 232
BspLI GGNNCC 1 cut(s) 256
BspPI GGATC 3 cut(s) 196, 249, 262
BspQI GCTCTTC 1 cut(s) 89
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 78, 168
BssMI GATC 3 cut(s) 149, 188, 254
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 31, 115
Bst6I CTCTTC 1 cut(s) 89
BstDSI CCRYGG 2 cut(s) 78, 168
BstKTI GATC 3 cut(s) 152, 191, 257
BstMBI GATC 3 cut(s) 149, 188, 254
BstNI CCWGG 1 cut(s) 195
BstSCI CCNGG 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 2 cut(s) 149, 254
BstYI RGATCY 2 cut(s) 149, 254
BtgI CCRYGG 2 cut(s) 78, 168
CciI TCATGA 2 cut(s) 121, 232
Cfr10I RCCGGY 1 cut(s) 305
Cfr13I GGNCC 1 cut(s) 329
CsiI ACCWGGT 1 cut(s) 193
Csp6I GTAC 1 cut(s) 198
CviAII CATG 5 cut(s) 79, 122, 137, 233, 314
CviJI RGCY 4 cut(s) 5, 83, 99, 143
CviKI_1 RGCY 4 cut(s) 5, 83, 99, 143
CviQI GTAC 1 cut(s) 198
DpnI GATC 3 cut(s) 151, 190, 256
DpnII GATC 3 cut(s) 149, 188, 254
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 329
EcoRII CCWGG 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 5 cut(s) 82, 125, 140, 236, 317
FaiI YATR 6 cut(s) 65, 80, 123, 138, 234, 315
FatI CATG 5 cut(s) 78, 121, 136, 232, 313
Fnu4HI GCNGC 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 284
FspBI CTAG 3 cut(s) 6, 84, 132
GluI GCNGC 1 cut(s) 284
HapII CCGG 1 cut(s) 306
Hin1II CATG 5 cut(s) 82, 125, 140, 236, 317
HinfI GANTC 3 cut(s) 125, 221, 236
HpaII CCGG 1 cut(s) 306
HphI GGTGA 2 cut(s) 183, 320
Hpy166II GTNNAC 1 cut(s) 311
Hpy188I TCNGA 2 cut(s) 158, 270
Hpy188III TCNNGA 4 cut(s) 122, 132, 233, 258
Hpy8I GTNNAC 1 cut(s) 311
Hpy99I CGWCG 1 cut(s) 270
HpyCH4III ACNGT 2 cut(s) 31, 115
HpyCH4V TGCA 2 cut(s) 17, 182
Hsp92II CATG 5 cut(s) 82, 125, 140, 236, 317
Kzo9I GATC 3 cut(s) 149, 188, 254
LguI GCTCTTC 1 cut(s) 89
LmnI GCTCC 1 cut(s) 140
LpnPI CCDG 6 cut(s) 129, 180, 186, 207, 271, 319
LweI GCATC 1 cut(s) 4
MabI ACCWGGT 1 cut(s) 193
MaeI CTAG 3 cut(s) 6, 84, 132
MalI GATC 3 cut(s) 151, 190, 256
MboI GATC 3 cut(s) 149, 188, 254
MboII GAAGA 7 cut(s) 25, 28, 31, 34, 106, 159, 171
MflI RGATCY 2 cut(s) 149, 254
MluCI AATT 1 cut(s) 274
MlyI GAGTC 1 cut(s) 245
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 8 cut(s) 56, 59, 139, 179, 245, 254, 283, 286
MroXI GAANNNNTTC 1 cut(s) 98
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 195
MvaI CCWGG 1 cut(s) 195
NcoI CCATGG 1 cut(s) 78
NdeII GATC 3 cut(s) 149, 188, 254
NlaIII CATG 5 cut(s) 82, 125, 140, 236, 317
NlaIV GGNNCC 1 cut(s) 256
PagI TCATGA 2 cut(s) 121, 232
PciSI GCTCTTC 1 cut(s) 89
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 125, 221
PkrI GCNGC 1 cut(s) 285
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
Psp6I CCWGG 1 cut(s) 193
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 329
PsrI GAACNNNNNNTAC 2 cut(s) 190, 222
PsuI RGATCY 2 cut(s) 149, 254
RsaI GTAC 1 cut(s) 199
RsaNI GTAC 1 cut(s) 198
RseI CAYNNNNRTG 1 cut(s) 77
SapI GCTCTTC 1 cut(s) 89
SatI GCNGC 1 cut(s) 284
Sau3AI GATC 3 cut(s) 149, 188, 254
Sau96I GGNCC 1 cut(s) 329
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 195
SetI ASST 8 cut(s) 28, 101, 145, 196, 219, 265, 297, 353
SexAI ACCWGGT 1 cut(s) 193
SfaNI GCATC 1 cut(s) 4
SgrAI CRCCGGYG 1 cut(s) 305
SinI GGWCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 1 cut(s) 274
SsiI CCGC 2 cut(s) 283, 327
SspI AATATT 1 cut(s) 176
SspMI CTAG 3 cut(s) 6, 84, 132
StyD4I CCNGG 1 cut(s) 193
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 2 cut(s) 31, 115
TaqI TCGA 1 cut(s) 244
TasI AATT 1 cut(s) 274
TauI GCSGC 1 cut(s) 286
TfiI GAWTC 2 cut(s) 125, 221
TspDTI ATGAA 2 cut(s) 213, 330
VpaK11BI GGWCC 1 cut(s) 329
XapI RAATTY 1 cut(s) 274
XbaI TCTAGA 1 cut(s) 131
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 3 cut(s) 6, 84, 132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.