pycom10g18950

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0018329
Physical Location & Seq
Forward (+)
22172484 .. 22172858
375 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g18950.1

Sequence Viewer

Length: 375 bp
ATGGCTAGTAATGCAAAATCATCTACCACCACTTTTACAACCCTCCTCTTCGTTCTTCTCATCATATTTCAAATCACCGTGGCTCAAAAGAAGCATAGCTTGTCAATCCCAGCTATCAGTAGTACTTCCTCGAGATCACTTGGAGTTGGAGTCATCACTAAGAAAAATGCTATCGTGGAATCTTCTACAAGAAGACCGTCACACGGCATCATCAATTCAAAGGATGATCACGAGTTTACAGGTGAATCGGGACGAAGGAGAGGACTAGAGTTTCGGATTCGTCGTGGGAGGCAGCCAATCCCATGGAAAGAAAACACGTTCAGAGCCGGTGCACATGAAGTTCCAAGTGGTCCGAATCCCATTTCAAATAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.64

Weight (kDa)

11.56

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018329)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G34925
fragaria_vesca FvH4_3g13250
pyrus_communis pycom05g22020 pycom10g18950
rosa_chinensis RchiOBHm_Chr5g0021721
rosa_roxburghii Rroxscaffold_1G00057000
rosa_samantha Rh5AG157200 Rh5BG156900 Rh5CG171000 Rh5DG157000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 124
AfiI CCNNNNNNNGG 1 cut(s) 203
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 71, 219, 366
AluBI AGCT 2 cut(s) 99, 113
AluI AGCT 2 cut(s) 99, 113
Alw21I GWGCWC 1 cut(s) 334
Alw44I GTGCAC 1 cut(s) 330
Ama87I CYCGRG 1 cut(s) 130
ApaLI GTGCAC 1 cut(s) 330
ApeKI GCWGC 1 cut(s) 292
ArsI GACNNNNNNTTYG 2 cut(s) 255, 287
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 2 cut(s) 67, 254
AvaI CYCGRG 1 cut(s) 130
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 334
BauI CACGAG 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 220
BclI TGATCA 1 cut(s) 226
BfaI CTAG 2 cut(s) 6, 266
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
BmcAI AGTACT 1 cut(s) 124
Bme18I GGWCC 1 cut(s) 350
BmeT110I CYCGRG 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 350
BmsI GCATC 1 cut(s) 216
BpiI GAAGAC 1 cut(s) 199
BsaJI CCNNGG 2 cut(s) 78, 302
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 326
BseDI CCNNGG 2 cut(s) 78, 302
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 304
BseYI CCCAGC 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 334
BsiHKCI CYCGRG 1 cut(s) 130
BsiSI CCGG 1 cut(s) 327
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 264
BsoBI CYCGRG 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 134, 226
Bsp19I CCATGG 1 cut(s) 302
BsrFI RCCGGY 1 cut(s) 326
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 2 cut(s) 78, 302
BssMI GATC 2 cut(s) 134, 226
BssSI CACGAG 1 cut(s) 230
BssT1I CCWWGG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 79, 198
Bst6I CTCTTC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 159
BstDSI CCRYGG 2 cut(s) 78, 302
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 2 cut(s) 137, 229
BstMBI GATC 2 cut(s) 134, 226
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 303
BtgI CCRYGG 2 cut(s) 78, 302
BtsCI GGATG 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 123
CviAII CATG 2 cut(s) 303, 335
CviJI RGCY 6 cut(s) 5, 83, 99, 113, 295, 326
CviKI_1 RGCY 6 cut(s) 5, 83, 99, 113, 295, 326
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 159
DpnI GATC 2 cut(s) 136, 228
DpnII GATC 2 cut(s) 134, 226
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 302
FaeI CATG 2 cut(s) 306, 338
FaiI YATR 4 cut(s) 65, 96, 304, 336
FalI AAGNNNNNCTT 2 cut(s) 83, 115
FaqI GGGAC 1 cut(s) 264
FatI CATG 2 cut(s) 302, 334
FbaI TGATCA 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 293
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 2 cut(s) 6, 266
GluI GCNGC 1 cut(s) 293
GsaI CCCAGC 1 cut(s) 113
HapII CCGG 1 cut(s) 327
Hin1II CATG 2 cut(s) 306, 338
HinfI GANTC 5 cut(s) 150, 179, 245, 277, 355
HpaII CCGG 1 cut(s) 327
HphI GGTGA 2 cut(s) 67, 254
Hpy166II GTNNAC 2 cut(s) 237, 332
Hpy188I TCNGA 3 cut(s) 276, 323, 354
Hpy188III TCNNGA 3 cut(s) 132, 230, 249
Hpy8I GTNNAC 2 cut(s) 237, 332
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 2 cut(s) 79, 198
HpyCH4IV ACGT 1 cut(s) 317
HpyCH4V TGCA 2 cut(s) 14, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 159
HpySE526I ACGT 1 cut(s) 317
Hsp92II CATG 2 cut(s) 306, 338
Ksp22I TGATCA 1 cut(s) 226
Kzo9I GATC 2 cut(s) 134, 226
LpnPI CCDG 3 cut(s) 123, 225, 340
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 216
MaeI CTAG 2 cut(s) 6, 266
MaeII ACGT 1 cut(s) 317
MaeIII GTNAC 1 cut(s) 198
MalI GATC 2 cut(s) 136, 228
MboI GATC 2 cut(s) 134, 226
MboII GAAGA 4 cut(s) 40, 47, 174, 204
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 1 cut(s) 214
MlyI GAGTC 1 cut(s) 159
MmeI TCCRAC 1 cut(s) 127
MnlI CCTC 5 cut(s) 53, 56, 139, 254, 282
MspI CCGG 1 cut(s) 327
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 302
NdeII GATC 2 cut(s) 134, 226
NlaIII CATG 2 cut(s) 306, 338
NmuCI GTSAC 1 cut(s) 198
PaeR7I CTCGAG 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 4 cut(s) 179, 245, 277, 355
PkrI GCNGC 1 cut(s) 294
PleI GAGTC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 134, 226
Sau96I GGNCC 1 cut(s) 350
ScaI AGTACT 1 cut(s) 124
SchI GAGTC 1 cut(s) 159
SduI GDGCHC 1 cut(s) 334
SetI ASST 5 cut(s) 101, 115, 244, 320, 374
SfaNI GCATC 1 cut(s) 216
Sfr274I CTCGAG 1 cut(s) 130
SinI GGWCC 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 130
SmlI CTYRAG 1 cut(s) 130
SmoI CTYRAG 1 cut(s) 130
Sse9I AATT 1 cut(s) 214
SspMI CTAG 2 cut(s) 6, 266
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 2 cut(s) 79, 198
TaiI ACGT 1 cut(s) 320
TaqI TCGA 1 cut(s) 131
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 122
TfiI GAWTC 4 cut(s) 179, 245, 277, 355
TseFI GTSAC 1 cut(s) 198
TseI GCWGC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 198
TspDTI ATGAA 1 cut(s) 351
VneI GTGCAC 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 350
XhoI CTCGAG 1 cut(s) 130
XspI CTAG 2 cut(s) 6, 266
ZrmI AGTACT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.