FvH4_3g18010

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0021041
Physical Location & Seq
Reverse (-)
11454073 .. 11456842
2770 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18010.t1

Sequence Viewer

Length: 525 bp
ATGAAGTTTGGATTGAAACGTAAACAGAGACATAAACATCAATACAAATCAACTTCCCTGCATATTTCCAACGTCGAATATCTCTCTCTTTCGGCTCACTTTTTGTATGCTCGTTGTCTACCTGCTTTTGATAATTTGATCCAATTGAAGCTGGTTCTTCGTGAATGCTATCGGTGGATATTGCTATCACAACTGCTAAAGAGATCGCCTAATCTGGAATGTCTTATCTTAGAATATGAAGAACAGGGTGATGATGAGTCATATTTAAGCGATGAAACAAATTCAGCGGACGAAGAAAACTCGGACGATGAAGAAAATCTAGGGGATGGAACAAACTCAGAGGATGAAGAAAACTCAGGTGAAGAAGACTCAGAGAATGAAGAATACGCAAAGCATCAGCGGTGGAAAGCAAAGCATCACTGGTGGAATAGGGAAGAGCCTGCTCCTACTTGTGTGTTGTCACATCTCAAGACTGTCTCTATAAGTGGTTTCAAGGGACGTGAGGATGAGAGGGAAGTGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

175

Amino Acids

20.45

Weight (kDa)

4.99

Isoelectric Point (pI)

64.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 147 - 174 7.3e-08 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18010 FvH4_3g18010
rosa_laevigata RLG00000033101
rosa_samantha Rh5CG219900 Rh5DG202700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 130
AccI GTMKAC 1 cut(s) 118
AciI CCGC 2 cut(s) 287, 400
AclWI GGATC 1 cut(s) 133
AcsI RAATTY 1 cut(s) 280
AgsI TTSAA 3 cut(s) 16, 148, 493
AjiI CACGTC 1 cut(s) 500
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 22, 481
AlwI GGATC 1 cut(s) 133
ApoI RAATTY 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 260, 371
BbsI GAAGAC 1 cut(s) 372
BccI CCATC 1 cut(s) 320
BcoDI GTCTC 2 cut(s) 22, 481
BfaI CTAG 1 cut(s) 320
BfuAI ACCTGC 1 cut(s) 130
BmgBI CACGTC 1 cut(s) 500
BmsI GCATC 2 cut(s) 403, 424
BpiI GAAGAC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 452
Bse1I ACTGG 1 cut(s) 425
BseGI GGATG 3 cut(s) 331, 349, 511
BseMII CTCAG 3 cut(s) 351, 369, 384
BseNI ACTGG 1 cut(s) 425
BslFI GGGAC 1 cut(s) 510
BsmAI GTCTC 2 cut(s) 22, 481
BsmFI GGGAC 1 cut(s) 510
BsmI GAATGC 1 cut(s) 170
Bsp143I GATC 2 cut(s) 138, 203
BspACI CCGC 2 cut(s) 287, 400
BspCNI CTCAG 3 cut(s) 350, 368, 383
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 133
BspQI GCTCTTC 1 cut(s) 429
BsrI ACTGG 1 cut(s) 425
BssMI GATC 2 cut(s) 138, 203
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 1 cut(s) 429
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 4 cut(s) 229, 337, 355, 370
BstF5I GGATG 3 cut(s) 331, 349, 511
BstKTI GATC 2 cut(s) 141, 206
BstMAI GTCTC 2 cut(s) 22, 481
BstMBI GATC 2 cut(s) 138, 203
BstV2I GAAGAC 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 3 cut(s) 331, 349, 511
BtsIMutI CAGTG 1 cut(s) 418
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 441
CviJI RGCY 3 cut(s) 95, 151, 439
CviKI_1 RGCY 3 cut(s) 95, 151, 439
DdeI CTNAG 4 cut(s) 229, 337, 355, 370
DpnI GATC 2 cut(s) 140, 205
DpnII GATC 2 cut(s) 138, 203
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
FaiI YATR 7 cut(s) 33, 63, 108, 237, 262, 482, 523
FaqI GGGAC 1 cut(s) 510
FblI GTMKAC 1 cut(s) 118
FokI GGATG 3 cut(s) 338, 356, 518
FspBI CTAG 1 cut(s) 320
HinfI GANTC 2 cut(s) 257, 368
HphI GGTGA 2 cut(s) 260, 371
Hpy166II GTNNAC 2 cut(s) 23, 119
Hpy188I TCNGA 3 cut(s) 304, 340, 373
Hpy188III TCNNGA 3 cut(s) 161, 215, 469
Hpy8I GTNNAC 2 cut(s) 23, 119
Hpy99I CGWCG 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 3 cut(s) 19, 72, 499
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 4 cut(s) 229, 337, 355, 370
HpySE526I ACGT 3 cut(s) 19, 72, 499
Kzo9I GATC 2 cut(s) 138, 203
LguI GCTCTTC 1 cut(s) 429
LmnI GCTCC 1 cut(s) 448
LpnPI CCDG 8 cut(s) 71, 135, 137, 200, 230, 342, 406, 453
LweI GCATC 2 cut(s) 403, 424
MaeI CTAG 1 cut(s) 320
MaeII ACGT 3 cut(s) 19, 72, 499
MaeIII GTNAC 1 cut(s) 459
MalI GATC 2 cut(s) 140, 205
MboI GATC 2 cut(s) 138, 203
MboII GAAGA 9 cut(s) 149, 251, 305, 323, 359, 374, 377, 392, 446
MfeI CAATTG 1 cut(s) 143
MluCI AATT 3 cut(s) 133, 143, 280
MlyI GAGTC 2 cut(s) 266, 362
MmeI TCCRAC 1 cut(s) 93
MnlI CCTC 3 cut(s) 334, 496, 504
MseI TTAA 1 cut(s) 266
MspA1I CMGCKG 2 cut(s) 287, 400
MunI CAATTG 1 cut(s) 143
Mva1269I GAATGC 1 cut(s) 170
NdeII GATC 2 cut(s) 138, 203
NmuCI GTSAC 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 429
PctI GAATGC 1 cut(s) 170
PleI GAGTC 2 cut(s) 265, 362
PpsI GAGTC 2 cut(s) 265, 362
SapI GCTCTTC 1 cut(s) 429
SaqAI TTAA 1 cut(s) 266
Sau3AI GATC 2 cut(s) 138, 203
SchI GAGTC 2 cut(s) 266, 362
SetI ASST 6 cut(s) 22, 75, 124, 153, 361, 502
SfaNI GCATC 2 cut(s) 403, 424
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 3 cut(s) 133, 143, 280
SsiI CCGC 2 cut(s) 287, 400
SspMI CTAG 1 cut(s) 320
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 3 cut(s) 22, 75, 502
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 133, 143, 280
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 425
TseFI GTSAC 1 cut(s) 459
Tsp45I GTSAC 1 cut(s) 459
TspDTI ATGAA 6 cut(s) 17, 252, 288, 324, 360, 393
TspRI CASTG 1 cut(s) 425
XapI RAATTY 1 cut(s) 280
XmiI GTMKAC 1 cut(s) 118
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.