Rh5DG202700

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0021041
Physical Location & Seq
Forward (+)
22397270 .. 22398321
1052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG202700.1

Sequence Viewer

Length: 621 bp
ATGAATTTGTGTCTGATTATTACTTTATCTTTGATGAAGGCTTGCTCTGTGCCTCCTTTTGATAGTTTGAGCAAATTGAGGCTGGTTCATTCTAGGAGCTCTTACTGGTGGAGAACTTTAATGAGGTTGCTAGAGAGATCACCTAACCTAGAGTGTCTTGCAATAGACGACTGCTCTTATCAAACTCGAAGACAGCTGGAAGAGGAGGTGATTGAACATGCTGACAAAGGAGCAGAAGTGATTGAACAAGCTGAGAATGGACCGGAGGTGATTGAACGAGCTGGGAATGGACTGGAGGTGATTGATCTTAGAGAGCAAATAGCAGCACTAGTACGTACTCTGAACTGGGTTCCACCAGATTCTATTCCCAAATGTTTGCCGTCACGCCTGAAGACTATCTCCATTAACGGATTCTATGGAAAGGGAACGATTGGATATCTGGATGAGATGGAGTTGATCAAGTATTTATTAAAGAATGGTAGAGTTCTGGAGAAGATGACTATTTATACTCCTGGTCTACATGGGGGTACAAAAGAGGAGTTTTTCGATGAACTTTCAATGTTTGATTGGGGTTCAAAGACTGTTCAAGTTGAAATGATCGAGGAGATATCTTATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

206

Amino Acids

23.56

Weight (kDa)

5.04

Isoelectric Point (pI)

50.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBD PF08387 119 - 168 2.9e-12 FBD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021041)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g18010 FvH4_3g18010
rosa_laevigata RLG00000033101
rosa_samantha Rh5CG219900 Rh5DG202700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 517
AcsI RAATTY 1 cut(s) 4
AcuI CTGAAG 1 cut(s) 410
AfaI GTAC 3 cut(s) 333, 337, 529
AgsI TTSAA 7 cut(s) 215, 245, 275, 558, 576, 587, 593
AhlI ACTAGT 1 cut(s) 328
AjnI CCWGG 1 cut(s) 511
AluBI AGCT 4 cut(s) 99, 196, 251, 281
AluI AGCT 4 cut(s) 99, 196, 251, 281
Alw21I GWGCWC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 1 cut(s) 4
AspS9I GGNCC 1 cut(s) 260
AsuHPI GGTGA 4 cut(s) 132, 220, 280, 310
AvaII GGWCC 1 cut(s) 260
BanII GRGCYC 1 cut(s) 101
BbsI GAAGAC 2 cut(s) 196, 398
Bbv12I GWGCWC 1 cut(s) 101
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 442
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 513
BclI TGATCA 1 cut(s) 456
BcuI ACTAGT 1 cut(s) 328
BfaI CTAG 4 cut(s) 93, 131, 149, 329
BisI GCNGC 1 cut(s) 324
BlsI GCNGC 1 cut(s) 325
Bme1390I CCNGG 1 cut(s) 513
Bme18I GGWCC 1 cut(s) 260
BmgT120I GGNCC 1 cut(s) 260
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 513
BmrI ACTGGG 1 cut(s) 355
BmuI ACTGGG 1 cut(s) 355
BpiI GAAGAC 2 cut(s) 196, 398
BpmI CTGGAG 2 cut(s) 314, 509
BsaAI YACGTR 1 cut(s) 335
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 2 cut(s) 222, 252
Bse1I ACTGG 3 cut(s) 110, 297, 350
BseBI CCWGG 1 cut(s) 513
BseGI GGATG 1 cut(s) 448
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 110, 297, 350
BseRI GAGGAG 3 cut(s) 218, 551, 617
BseXI GCAGC 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 1 cut(s) 263
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 4 cut(s) 137, 304, 456, 597
BspCNI CTCAG 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 351
BsrI ACTGG 3 cut(s) 110, 297, 350
BssMI GATC 4 cut(s) 137, 304, 456, 597
Bst2UI CCWGG 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 252, 308
BstF5I GGATG 1 cut(s) 448
BstKTI GATC 4 cut(s) 140, 307, 459, 600
BstMBI GATC 4 cut(s) 137, 304, 456, 597
BstNI CCWGG 1 cut(s) 513
BstNSI RCATGY 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 511
BstSNI TACGTA 1 cut(s) 335
BstV1I GCAGC 1 cut(s) 335
BstV2I GAAGAC 2 cut(s) 196, 398
BtsCI GGATG 1 cut(s) 448
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 260
Csp6I GTAC 3 cut(s) 332, 336, 528
CviAII CATG 2 cut(s) 218, 521
CviJI RGCY 6 cut(s) 41, 82, 99, 196, 251, 281
CviKI_1 RGCY 6 cut(s) 41, 82, 99, 196, 251, 281
CviQI GTAC 3 cut(s) 332, 336, 528
DdeI CTNAG 2 cut(s) 252, 308
DpnI GATC 4 cut(s) 139, 306, 458, 599
DpnII GATC 4 cut(s) 137, 304, 456, 597
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Ecl136II GAGCTC 1 cut(s) 99
Eco105I TACGTA 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 101
Eco32I GATATC 2 cut(s) 437, 609
Eco47I GGWCC 1 cut(s) 260
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 410
EcoICRI GAGCTC 1 cut(s) 99
EcoRII CCWGG 1 cut(s) 511
EcoRV GATATC 2 cut(s) 437, 609
EcoT38I GRGCYC 1 cut(s) 101
FaeI CATG 2 cut(s) 221, 524
FaiI YATR 4 cut(s) 219, 417, 507, 522
FatI CATG 2 cut(s) 217, 520
FbaI TGATCA 1 cut(s) 456
FblI GTMKAC 1 cut(s) 517
Fnu4HI GCNGC 1 cut(s) 324
FokI GGATG 1 cut(s) 455
FriOI GRGCYC 1 cut(s) 101
Fsp4HI GCNGC 1 cut(s) 324
FspBI CTAG 4 cut(s) 93, 131, 149, 329
GluI GCNGC 1 cut(s) 324
GsaI CCCAGC 1 cut(s) 285
GsuI CTGGAG 2 cut(s) 314, 509
HapII CCGG 1 cut(s) 263
Hin1II CATG 2 cut(s) 221, 524
HinfI GANTC 2 cut(s) 359, 411
HpaII CCGG 1 cut(s) 263
HphI GGTGA 4 cut(s) 132, 220, 280, 310
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 2 cut(s) 15, 342
Hpy188III TCNNGA 2 cut(s) 440, 488
Hpy8I GTNNAC 1 cut(s) 518
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 1 cut(s) 334
HpyCH4V TGCA 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 252, 308
HpySE526I ACGT 1 cut(s) 334
Hsp92II CATG 2 cut(s) 221, 524
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 4 cut(s) 137, 304, 456, 597
LmnI GCTCC 2 cut(s) 96, 230
Lsp1109I GCAGC 1 cut(s) 335
MaeI CTAG 4 cut(s) 93, 131, 149, 329
MaeII ACGT 1 cut(s) 334
MaeIII GTNAC 1 cut(s) 381
MalI GATC 4 cut(s) 139, 306, 458, 599
MboI GATC 4 cut(s) 137, 304, 456, 597
MboII GAAGA 4 cut(s) 201, 212, 403, 505
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 2 cut(s) 4, 74
MnlI CCTC 9 cut(s) 63, 72, 117, 196, 199, 259, 289, 529, 595
MseI TTAA 3 cut(s) 119, 405, 470
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 1 cut(s) 263
MspR9I CCNGG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 513
NdeII GATC 4 cut(s) 137, 304, 456, 597
NlaIII CATG 2 cut(s) 221, 524
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 1 cut(s) 381
NspI RCATGY 1 cut(s) 221
PfeI GAWTC 2 cut(s) 359, 411
PkrI GCNGC 1 cut(s) 325
Ppu21I YACGTR 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 101
Psp6I CCWGG 1 cut(s) 511
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 511
PspN4I GGNNCC 1 cut(s) 351
PspPI GGNCC 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 333, 337, 529
RsaNI GTAC 3 cut(s) 332, 336, 528
SacI GAGCTC 1 cut(s) 101
SaqAI TTAA 3 cut(s) 119, 405, 470
SatI GCNGC 1 cut(s) 324
Sau3AI GATC 4 cut(s) 137, 304, 456, 597
Sau96I GGNCC 1 cut(s) 260
ScrFI CCNGG 1 cut(s) 513
SduI GDGCHC 1 cut(s) 101
SinI GGWCC 1 cut(s) 260
SnaBI TACGTA 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 328
Sse9I AATT 2 cut(s) 4, 74
SspMI CTAG 4 cut(s) 93, 131, 149, 329
SstI GAGCTC 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 511
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 1 cut(s) 337
TaqI TCGA 3 cut(s) 187, 546, 600
TasI AATT 2 cut(s) 4, 74
TfiI GAWTC 2 cut(s) 359, 411
Tru1I TTAA 3 cut(s) 119, 405, 470
Tru9I TTAA 3 cut(s) 119, 405, 470
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 4 cut(s) 17, 50, 77, 564
TspGWI ACGGA 1 cut(s) 423
VpaK11BI GGWCC 1 cut(s) 260
XapI RAATTY 1 cut(s) 4
XceI RCATGY 1 cut(s) 221
XmiI GTMKAC 1 cut(s) 517
XspI CTAG 4 cut(s) 93, 131, 149, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.