FvH4_3g21752

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
14799141 .. 14799556
416 bp
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UTR
Exon/CDS
Intron
FvH4_3g21752.t1

Sequence Viewer

Length: 315 bp
ATGGAAGTTGTGATCTCAATCTGTGCTTCTGTAGTGGGAGAAACTCTCCAATATTGTTGCTCTTGCATCTGTTCTGGTAGCAAGAACACAGTCAAGTTCCGGAAGAATCTCGATGAATTAGATAAGGAGATGAAGACTCTTGTGGATCTAAGGAATGATTTGCAGCAGGCCAAGGGAGATAGAAAAGAACCTACCATAGAAGAGTGGCTTAGAGAAGCTCAACTGCCCAAGAGCTTGAGAGGAAAGGAGGTACAAAATCTGCTTATCAAAGGTCGCAGTTTACCAGAAGCTCAAATTGCAAAACACCAAGGCTGA

Protein Analysis

105

Amino Acids

11.73

Weight (kDa)

8.29

Isoelectric Point (pI)

36.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21752
rosa_laevigata RLG00000033767
rosa_samantha Rh5CG288500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 99
AclWI GGATC 1 cut(s) 153
AfaI GTAC 1 cut(s) 252
AluBI AGCT 3 cut(s) 218, 234, 290
AluI AGCT 3 cut(s) 218, 234, 290
AlwI GGATC 1 cut(s) 153
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 140
BbvI GCAGC 1 cut(s) 175
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 164
BlsI GCNGC 1 cut(s) 165
BmsI GCATC 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 140
BplI GAGNNNNNCTC 2 cut(s) 30, 62
BpuEI CTTGAG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 171, 307
BsaWI WCCGGW 1 cut(s) 99
Bse8I GATNNNNATC 1 cut(s) 17
BseAI TCCGGA 1 cut(s) 99
BseDI CCNNGG 2 cut(s) 171, 307
BseJI GATNNNNATC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 170
BsiSI CCGG 1 cut(s) 100
BsnI GGCC 1 cut(s) 170
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 2 cut(s) 12, 145
BspANI GGCC 1 cut(s) 170
BspEI TCCGGA 1 cut(s) 99
BspPI GGATC 1 cut(s) 153
BssECI CCNNGG 2 cut(s) 171, 307
BssMI GATC 2 cut(s) 12, 145
BssT1I CCWWGG 2 cut(s) 171, 307
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 149, 209
BstKTI GATC 2 cut(s) 15, 148
BstMBI GATC 2 cut(s) 12, 145
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 170
Cac8I GCNNGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 251
CviJI RGCY 6 cut(s) 170, 208, 218, 234, 290, 312
CviKI_1 RGCY 6 cut(s) 170, 208, 218, 234, 290, 312
CviQI GTAC 1 cut(s) 251
DdeI CTNAG 2 cut(s) 149, 209
DpnI GATC 2 cut(s) 14, 147
DpnII GATC 2 cut(s) 12, 145
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco130I CCWWGG 2 cut(s) 171, 307
EcoT14I CCWWGG 2 cut(s) 171, 307
ErhI CCWWGG 2 cut(s) 171, 307
FaiI YATR 1 cut(s) 197
FalI AAGNNNNNCTT 2 cut(s) 192, 224
Fnu4HI GCNGC 1 cut(s) 164
Fsp4HI GCNGC 1 cut(s) 164
GluI GCNGC 1 cut(s) 164
HaeIII GGCC 1 cut(s) 170
HapII CCGG 1 cut(s) 100
HinfI GANTC 2 cut(s) 106, 136
HpaII CCGG 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 281
Hpy188III TCNNGA 2 cut(s) 100, 110
Hpy8I GTNNAC 1 cut(s) 281
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4V TGCA 3 cut(s) 66, 163, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 2 cut(s) 149, 209
Kpn2I TCCGGA 1 cut(s) 99
Kzo9I GATC 2 cut(s) 12, 145
LpnPI CCDG 4 cut(s) 60, 113, 152, 297
Lsp1109I GCAGC 1 cut(s) 175
LweI GCATC 1 cut(s) 75
MalI GATC 2 cut(s) 14, 147
MboI GATC 2 cut(s) 12, 145
MboII GAAGA 3 cut(s) 115, 145, 212
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 116, 294
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 2 cut(s) 233, 241
MroI TCCGGA 1 cut(s) 99
MspI CCGG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 296
NdeII GATC 2 cut(s) 12, 145
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 1 cut(s) 165
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 252
RsaNI GTAC 1 cut(s) 251
SatI GCNGC 1 cut(s) 164
Sau3AI GATC 2 cut(s) 12, 145
SchI GAGTC 1 cut(s) 130
SetI ASST 6 cut(s) 193, 220, 236, 252, 274, 292
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 235
SmoI CTYRAG 1 cut(s) 235
Sse9I AATT 2 cut(s) 116, 294
SspI AATATT 1 cut(s) 53
StyI CCWWGG 2 cut(s) 171, 307
TaaI ACNGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 116, 294
TfiI GAWTC 1 cut(s) 106
TseI GCWGC 1 cut(s) 163
TspDTI ATGAA 2 cut(s) 129, 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.