Rh5CG288500

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0024081
Physical Location & Seq
Forward (+)
31574866 .. 31575928
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG288500.1

Sequence Viewer

Length: 504 bp
ATGGAAGTTGTGATCTCAATCTGTGCTGCTGTAGTGGGAGAAACCATCCCATATTGTTGCTGTTGCATTTTTTCAGGTACCAAGAACACTGTCAAGTTCCAGAAGAATCTCGATGAATTAGAGAAGGAGATGAAGACTCTTGTGGATCTAAGGAATGATTTGCAGCGGCGCTCGACGGTGTCATCAGCCGAGGAAGATAGAAAAGCGCCTACTGTAGAAGAATGGCTTAGAGAAGCTCAAGAGCTCGAGAGGACAGTGCTTTTGACGCAAGAAGGTATTGCTGACAAGAAGAAGAAGCAGCTTTGCACAAAGCGGTGGAGAGATTCCAGAAAAGTGTCGATATCGCTCAGGGAGAGTCAACAGAAGATGAAACCCAACCACATAGTATCCACAATTTCCGCATCAGTAAAGCCAGCCACCCCTATTGCTCATGCGTCTCTCAAAACCACCCATTGTATTAACAGTCACCCTCCCAGGAGAACCAAAGAATATCTGCACAACTGA

Protein Analysis

167

Amino Acids

19.06

Weight (kDa)

9.21

Isoelectric Point (pI)

48.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21752
rosa_laevigata RLG00000033767
rosa_samantha Rh5CG288500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 77
AccB1I GGYRCC 1 cut(s) 77
AciI CCGC 3 cut(s) 166, 313, 399
AclWI GGATC 1 cut(s) 153
AfaI GTAC 1 cut(s) 79
AjnI CCWGG 1 cut(s) 473
AluBI AGCT 3 cut(s) 236, 244, 301
AluI AGCT 3 cut(s) 236, 244, 301
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 441
AlwI GGATC 1 cut(s) 153
Ama87I CYCGRG 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 26, 163, 298
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
Asp718I GGTACC 1 cut(s) 77
AspLEI GCGC 2 cut(s) 171, 208
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 245
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 1 cut(s) 246
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 13, 175, 310
BccI CCATC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 475
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 441
BfmI CTRYAG 2 cut(s) 30, 213
BfoI RGCGCY 2 cut(s) 172, 209
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 4 cut(s) 27, 164, 167, 299
BlsI GCNGC 4 cut(s) 28, 165, 168, 300
Bme1390I CCNGG 1 cut(s) 475
BmeT110I CYCGRG 1 cut(s) 245
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 475
BmsI GCATC 1 cut(s) 410
BpiI GAAGAC 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 17
BsaJI CCNNGG 2 cut(s) 189, 473
Bse8I GATNNNNATC 1 cut(s) 17
BseBI CCWGG 1 cut(s) 475
BseDI CCNNGG 2 cut(s) 189, 473
BseGI GGATG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 17
BseMII CTCAG 1 cut(s) 361
BseXI GCAGC 3 cut(s) 13, 175, 310
BsgI GTGCAG 1 cut(s) 479
BshNI GGYRCC 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 441
BsmBI CGTCTC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 245
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 12, 145
BspACI CCGC 3 cut(s) 166, 313, 399
BspCNI CTCAG 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 79
BspPI GGATC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 189, 473
BssMI GATC 2 cut(s) 12, 145
Bst2UI CCWGG 1 cut(s) 475
Bst4CI ACNGT 5 cut(s) 91, 178, 214, 256, 464
BstC8I GCNNGC 1 cut(s) 414
BstDEI CTNAG 3 cut(s) 149, 227, 347
BstF5I GGATG 1 cut(s) 45
BstH2I RGCGCY 2 cut(s) 172, 209
BstHHI GCGC 2 cut(s) 171, 208
BstKTI GATC 2 cut(s) 15, 148
BstMAI GTCTC 1 cut(s) 441
BstMBI GATC 2 cut(s) 12, 145
BstMWI GCNNNNNNNGC 1 cut(s) 265
BstNI CCWGG 1 cut(s) 475
BstSCI CCNGG 1 cut(s) 473
BstSFI CTRYAG 2 cut(s) 30, 213
BstV1I GCAGC 3 cut(s) 13, 175, 310
BstV2I GAAGAC 1 cut(s) 140
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuI GTATCC 1 cut(s) 397
BtsCI GGATG 1 cut(s) 45
BtsIMutI CAGTG 2 cut(s) 87, 261
Cac8I GCNNGC 1 cut(s) 414
CfoI GCGC 2 cut(s) 171, 208
CseI GACGC 2 cut(s) 274, 423
Csp6I GTAC 1 cut(s) 78
CspCI CAANNNNNGTGG 2 cut(s) 406, 441
CviAII CATG 1 cut(s) 431
CviJI RGCY 7 cut(s) 188, 226, 236, 244, 301, 412, 416
CviKI_1 RGCY 7 cut(s) 188, 226, 236, 244, 301, 412, 416
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 3 cut(s) 149, 227, 347
DpnI GATC 2 cut(s) 14, 147
DpnII GATC 2 cut(s) 12, 145
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco32I GATATC 1 cut(s) 342
Eco53kI GAGCTC 1 cut(s) 244
Eco88I CYCGRG 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 473
EcoRV GATATC 1 cut(s) 342
EcoT38I GRGCYC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 441
FaeI CATG 1 cut(s) 434
FaiI YATR 3 cut(s) 52, 383, 432
FalI AAGNNNNNCTT 2 cut(s) 210, 242
FatI CATG 1 cut(s) 430
Fnu4HI GCNGC 4 cut(s) 27, 164, 167, 299
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 4 cut(s) 27, 164, 167, 299
GlaI GCGC 2 cut(s) 170, 207
GluI GCNGC 4 cut(s) 27, 164, 167, 299
HaeII RGCGCY 2 cut(s) 172, 209
HgaI GACGC 2 cut(s) 274, 423
HhaI GCGC 2 cut(s) 171, 208
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 2 cut(s) 169, 206
HinP1I GCGC 2 cut(s) 169, 206
HincII GTYRAC 1 cut(s) 359
HindII GTYRAC 1 cut(s) 359
HinfI GANTC 4 cut(s) 106, 136, 323, 355
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 1 cut(s) 359
Hpy188III TCNNGA 5 cut(s) 100, 110, 239, 247, 327
Hpy8I GTNNAC 1 cut(s) 359
Hpy99I CGWCG 1 cut(s) 178
HpyAV CCTTC 2 cut(s) 118, 266
HpyCH4III ACNGT 5 cut(s) 91, 178, 214, 256, 464
HpyCH4V TGCA 4 cut(s) 66, 163, 306, 496
HpyF10VI GCNNNNNNNGC 1 cut(s) 265
HpyF3I CTNAG 3 cut(s) 149, 227, 347
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 2 cut(s) 169, 206
KpnI GGTACC 1 cut(s) 81
Kzo9I GATC 2 cut(s) 12, 145
LpnPI CCDG 7 cut(s) 60, 113, 334, 340, 426, 460, 487
Lsp1109I GCAGC 3 cut(s) 13, 175, 310
LweI GCATC 1 cut(s) 410
MaeIII GTNAC 1 cut(s) 464
MalI GATC 2 cut(s) 14, 147
MboI GATC 2 cut(s) 12, 145
MboII GAAGA 7 cut(s) 115, 145, 206, 230, 301, 304, 376
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 116, 393
MlyI GAGTC 2 cut(s) 130, 364
MnlI CCTC 3 cut(s) 184, 243, 480
MseI TTAA 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 475
MvaI CCWGG 1 cut(s) 475
MwoI GCNNNNNNNGC 1 cut(s) 265
NdeII GATC 2 cut(s) 12, 145
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 214
NmuCI GTSAC 1 cut(s) 464
PaeR7I CTCGAG 1 cut(s) 245
PfeI GAWTC 2 cut(s) 106, 323
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 4 cut(s) 28, 165, 168, 300
PleI GAGTC 2 cut(s) 130, 363
PpsI GAGTC 2 cut(s) 130, 363
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 473
PspGI CCWGG 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 79
PsuI RGATCY 1 cut(s) 145
PsyI GACNNNGTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 4 cut(s) 27, 164, 167, 299
Sau3AI GATC 2 cut(s) 12, 145
SchI GAGTC 2 cut(s) 130, 364
ScrFI CCNGG 1 cut(s) 475
SduI GDGCHC 1 cut(s) 246
SetI ASST 5 cut(s) 79, 238, 246, 277, 303
SfaNI GCATC 1 cut(s) 410
SfcI CTRYAG 2 cut(s) 30, 213
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 237, 245
SmoI CTYRAG 2 cut(s) 237, 245
Sse9I AATT 2 cut(s) 116, 393
SsiI CCGC 3 cut(s) 166, 313, 399
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 473
TaaI ACNGT 5 cut(s) 91, 178, 214, 256, 464
TaqI TCGA 4 cut(s) 111, 173, 246, 338
TasI AATT 2 cut(s) 116, 393
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 2 cut(s) 106, 323
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TscAI CASTG 2 cut(s) 94, 261
TseFI GTSAC 1 cut(s) 464
TseI GCWGC 3 cut(s) 26, 163, 298
Tsp45I GTSAC 1 cut(s) 464
TspDTI ATGAA 3 cut(s) 129, 146, 383
TspRI CASTG 2 cut(s) 94, 261
Tth111I GACNNNGTC 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.