RLG00000033767

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0024081
Physical Location & Seq
Forward (+)
31899055 .. 31899617
563 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033767

Sequence Viewer

Length: 309 bp
ATGAAGACTCTTGTGGATCTAAGGAATGATTTGCAGCGATGCTCGATGGTGTCATCAGCCGAGGAAGATAGAAAAGCTCCTACTGTAGAAGAATGGCTTAGAGAAGCTCAAGAGCTCGAGAGGAAAGTGCTTTTGACGCAAGAAGGTATTGCTGACAAGAAGAAGCAGCTGCTTTGCACAAAGCGGTGGAGAGATTCTAGAAAAGTGTCAATATCGCTCAGGGAGGTCACAAGGAACTCTTCCCCTGCGGCGCGGAAGAAGTTCCTCAACAGTAAAATAACTTTCTGCATTGCAGTAACCGCAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.79

Weight (kDa)

9.81

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024081)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21752
rosa_laevigata RLG00000033767
rosa_samantha Rh5CG288500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 253
AciI CCGC 4 cut(s) 184, 248, 253, 300
AclWI GGATC 1 cut(s) 24
AluBI AGCT 4 cut(s) 77, 107, 115, 169
AluI AGCT 4 cut(s) 77, 107, 115, 169
Alw21I GWGCWC 1 cut(s) 117
AlwI GGATC 1 cut(s) 24
Ama87I CYCGRG 1 cut(s) 116
ApeKI GCWGC 3 cut(s) 34, 166, 169
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 253
AvaI CYCGRG 1 cut(s) 116
BanII GRGCYC 1 cut(s) 117
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 46, 156, 178
BccI CCATC 1 cut(s) 40
BfaI CTAG 1 cut(s) 198
BfmI CTRYAG 1 cut(s) 84
BisI GCNGC 4 cut(s) 35, 167, 170, 249
BlsI GCNGC 4 cut(s) 36, 168, 171, 250
BmeT110I CYCGRG 1 cut(s) 116
BmsI GCATC 1 cut(s) 29
BpiI GAAGAC 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 218
BpuEI CTTGAG 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 60
Bse3DI GCAATG 1 cut(s) 288
BseDI CCNNGG 1 cut(s) 60
BseMI GCAATG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 232
BseXI GCAGC 3 cut(s) 46, 156, 178
Bsh1236I CGCG 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 117
BsiHKCI CYCGRG 1 cut(s) 116
BsoBI CYCGRG 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 16
BspACI CCGC 4 cut(s) 184, 248, 253, 300
BspCNI CTCAG 1 cut(s) 231
BspFNI CGCG 1 cut(s) 253
BspPI GGATC 1 cut(s) 24
BsrDI GCAATG 1 cut(s) 288
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 85, 272
Bst6I CTCTTC 1 cut(s) 244
BstDEI CTNAG 3 cut(s) 20, 98, 218
BstFNI CGCG 1 cut(s) 253
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 136, 299
BstSFI CTRYAG 1 cut(s) 84
BstUI CGCG 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 46, 156, 178
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 16
BstYI RGATCY 1 cut(s) 16
BtgZI GCGATG 1 cut(s) 52
CfoI GCGC 1 cut(s) 253
CseI GACGC 1 cut(s) 145
CviJI RGCY 6 cut(s) 59, 77, 97, 107, 115, 169
CviKI_1 RGCY 6 cut(s) 59, 77, 97, 107, 115, 169
DdeI CTNAG 3 cut(s) 20, 98, 218
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 244
EarI CTCTTC 1 cut(s) 244
Ecl136II GAGCTC 1 cut(s) 115
Eco24I GRGCYC 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 116
EcoICRI GAGCTC 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 117
FaiI YATR 1 cut(s) 307
FalI AAGNNNNNCTT 4 cut(s) 81, 113, 223, 255
Fnu4HI GCNGC 4 cut(s) 35, 167, 170, 249
FriOI GRGCYC 1 cut(s) 117
Fsp4HI GCNGC 4 cut(s) 35, 167, 170, 249
FspBI CTAG 1 cut(s) 198
GlaI GCGC 1 cut(s) 252
GluI GCNGC 4 cut(s) 35, 167, 170, 249
HgaI GACGC 1 cut(s) 145
HhaI GCGC 1 cut(s) 253
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 2 cut(s) 7, 194
Hpy188III TCNNGA 3 cut(s) 110, 118, 198
HpyAV CCTTC 1 cut(s) 137
HpyCH4III ACNGT 2 cut(s) 85, 272
HpyCH4V TGCA 4 cut(s) 34, 177, 288, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 136, 299
HpyF3I CTNAG 3 cut(s) 20, 98, 218
HspAI GCGC 1 cut(s) 251
Kzo9I GATC 1 cut(s) 16
LmnI GCTCC 1 cut(s) 82
LpnPI CCDG 2 cut(s) 205, 258
Lsp1109I GCAGC 3 cut(s) 46, 156, 178
LweI GCATC 1 cut(s) 29
MaeI CTAG 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 226, 295
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 6 cut(s) 16, 77, 101, 172, 231, 268
MflI RGATCY 1 cut(s) 16
MhlI GDGCHC 1 cut(s) 117
MnlI CCTC 4 cut(s) 55, 114, 217, 275
MroXI GAANNNNTTC 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 169
MvnI CGCG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 136, 299
NdeII GATC 1 cut(s) 16
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 4 cut(s) 36, 168, 171, 250
Psp124BI GAGCTC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 169
SacI GAGCTC 1 cut(s) 117
SatI GCNGC 4 cut(s) 35, 167, 170, 249
Sau3AI GATC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 117
SetI ASST 6 cut(s) 79, 109, 117, 148, 171, 228
SfaNI GCATC 1 cut(s) 29
SfcI CTRYAG 1 cut(s) 84
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 108, 116
SmoI CTYRAG 2 cut(s) 108, 116
SsiI CCGC 4 cut(s) 184, 248, 253, 300
SspMI CTAG 1 cut(s) 198
SstI GAGCTC 1 cut(s) 117
TaaI ACNGT 2 cut(s) 85, 272
TaqI TCGA 2 cut(s) 44, 117
TauI GCSGC 1 cut(s) 251
TfiI GAWTC 1 cut(s) 194
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 34, 166, 169
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 260
XspI CTAG 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.