Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0017266

Physical Location & Seq

Genomic Coordinates Reverse (-)

16438081 .. 16440135

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g23400.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGAAAATGGGAGGCATCAAACGTCGTAGATTGATAGTGGGATCACACAGCGGAGCAGCCACCTACATCAACCTCAAGATCAAGTACTCCCTGAACGACAATGAAGTATACTTCAATGTGATGAGAAACTGTGATCTGAGGAGGGTTATGGATGTTTCCTGTGAGCGACTGTCATTGGAACTCAATGATATTCGATTCGTGTACAAAGGTCATTTTGTTTTGGCCGAGTCGACTCCAGATCAGCTGGGAATGGAAGATGGGGATGTCATTGATGCAATTTCGGTTAGACCACGCACTCAGCTCACTGCCAATCCTGGCACGATCAATGTTTCAGTCTGTAGCCCGGTCACGCACAATAACAGATTGCACTTCAGGATCAACAAAAGCACTCGACTGATCATTAGTCTTATGAGGGCTTACTGTGATCAAATTTCAATGCCTGTCGATTGCTTTGCTTTTTTGTGGGAAGGTCGTCGTCTTCAAGACAATCTGACCCCAGATGAGTTGAAAATGGAAGATATGGTTGAAATTGATGCGATGCCGCACCAACCCGGTTGTGAAAATTGTTGCGAGCTACCATGGAACGGTATACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD ubiquitin

Protein Analysis

199

Amino Acids

22.62

Weight (kDa)

6.21

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	23 - 93	6.8e-10	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23400 FvH4_3g23400
rosa_chinensis	RchiOBHm_Chr5g0041191
rosa_laevigata	RLG00000034035
rosa_multiflora	Rmu_sc0001140.1_g000003 Rmu_sc0007618.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039450
rosa_rugosa	Rorug05G0190300.1
rosa_samantha	Rh5AG276400 Rh5BG281400 Rh5CG313400 Rh5DG289400
rosa_wichuraiana	Rw5G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	108, 230, 589
AciI	CCGC	2 cut(s)	51, 542
AclWI	GGATC	2 cut(s)	49, 383
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	1 cut(s)	355
AfaI	GTAC	2 cut(s)	86, 203
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	5 cut(s)	115, 435, 482, 508, 527
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	3 cut(s)	244, 301, 574
AluI	AGCT	3 cut(s)	244, 301, 574
AlwI	GGATC	2 cut(s)	49, 383
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	429
AsuC2I	CCSGG	2 cut(s)	344, 552
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	251
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BciT130I	CCWGG	1 cut(s)	315
BclI	TGATCA	2 cut(s)	396, 424
BcnI	CCSGG	2 cut(s)	344, 552
BfmI	CTRYAG	2 cut(s)	337, 593
BisI	GCNGC	2 cut(s)	57, 542
BlsI	GCNGC	2 cut(s)	58, 543
BmcAI	AGTACT	1 cut(s)	86
Bme1390I	CCNGG	3 cut(s)	315, 344, 552
BmrFI	CCNGG	3 cut(s)	315, 344, 552
BmsI	GCATC	4 cut(s)	24, 262, 523, 528
BpiI	GAAGAC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	59
BpuMI	CCSGG	2 cut(s)	344, 552
BsaJI	CCNNGG	1 cut(s)	578
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	2 cut(s)	157, 268
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMII	CTCAG	2 cut(s)	128, 311
BseRI	GAGGAG	1 cut(s)	154
BseXI	GCAGC	1 cut(s)	68
BseYI	CCCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	344, 552
BslI	CCNNNNNNNGG	1 cut(s)	584
BsnI	GGCC	1 cut(s)	224
Bsp1407I	TGTACA	1 cut(s)	201
Bsp143I	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
Bsp19I	CCATGG	1 cut(s)	578
BspACI	CCGC	2 cut(s)	51, 542
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	129, 310
BspPI	GGATC	2 cut(s)	49, 383
BsrGI	TGTACA	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
BssNAI	GTATAC	2 cut(s)	109, 590
BssT1I	CCWWGG	1 cut(s)	578
Bst1107I	GTATAC	2 cut(s)	109, 590
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	5 cut(s)	131, 171, 422, 587, 594
BstAUI	TGTACA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	572
BstDEI	CTNAG	2 cut(s)	137, 297
BstDSI	CCRYGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	157, 268
BstKTI	GATC	8 cut(s)	44, 81, 136, 241, 324, 378, 399, 427
BstMBI	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
BstNI	CCWGG	1 cut(s)	315
BstSCI	CCNGG	3 cut(s)	313, 342, 550
BstSFI	CTRYAG	2 cut(s)	337, 593
BstV1I	GCAGC	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	470
BstZ17I	GTATAC	2 cut(s)	109, 590
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	578
BtgZI	GCGATG	1 cut(s)	551
BtsCI	GGATG	2 cut(s)	157, 268
BtsI	GCAGTG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	572
Csp6I	GTAC	2 cut(s)	85, 202
CviAII	CATG	1 cut(s)	579
CviJI	RGCY	7 cut(s)	59, 224, 244, 301, 342, 416, 574
CviKI_1	RGCY	7 cut(s)	59, 224, 244, 301, 342, 416, 574
CviQI	GTAC	2 cut(s)	85, 202
DdeI	CTNAG	2 cut(s)	137, 297
DpnI	GATC	8 cut(s)	43, 80, 135, 240, 323, 377, 398, 426
DpnII	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
EaeI	YGGCCR	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	578
Eco57I	CTGAAG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	313
EcoT14I	CCWWGG	1 cut(s)	578
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	1 cut(s)	582
FaiI	YATR	6 cut(s)	109, 149, 410, 521, 580, 590
FatI	CATG	1 cut(s)	578
FbaI	TGATCA	2 cut(s)	396, 424
FblI	GTMKAC	3 cut(s)	108, 230, 589
Fnu4HI	GCNGC	2 cut(s)	57, 542
FokI	GGATG	2 cut(s)	164, 275
Fsp4HI	GCNGC	2 cut(s)	57, 542
GluI	GCNGC	2 cut(s)	57, 542
GsaI	CCCAGC	1 cut(s)	248
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	2 cut(s)	344, 552
Hin1II	CATG	1 cut(s)	582
HincII	GTYRAC	1 cut(s)	231
HindII	GTYRAC	1 cut(s)	231
HinfI	GANTC	3 cut(s)	195, 227, 232
HpaII	CCGG	2 cut(s)	344, 552
Hpy166II	GTNNAC	4 cut(s)	109, 202, 231, 590
Hpy188I	TCNGA	2 cut(s)	138, 492
Hpy188III	TCNNGA	4 cut(s)	76, 236, 373, 482
Hpy8I	GTNNAC	4 cut(s)	109, 202, 231, 590
Hpy99I	CGWCG	2 cut(s)	27, 477
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	5 cut(s)	131, 171, 422, 587, 594
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	275, 367
HpyF3I	CTNAG	2 cut(s)	137, 297
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	582
Ksp22I	TGATCA	2 cut(s)	396, 424
Kzo9I	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	4 cut(s)	24, 262, 523, 528
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	8 cut(s)	43, 80, 135, 240, 323, 377, 398, 426
MboI	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
MboII	GAAGA	3 cut(s)	266, 470, 527
MluCI	AATT	4 cut(s)	276, 429, 528, 562
MlyI	GAGTC	2 cut(s)	226, 236
MnlI	CCTC	5 cut(s)	5, 83, 132, 135, 405
MspA1I	CMGCKG	2 cut(s)	51, 244
MspI	CCGG	2 cut(s)	344, 552
MspR9I	CCNGG	3 cut(s)	315, 344, 552
MvaI	CCWGG	1 cut(s)	315
NciI	CCSGG	2 cut(s)	344, 552
NcoI	CCATGG	1 cut(s)	578
NdeII	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
NlaIII	CATG	1 cut(s)	582
NmeAIII	GCCGAG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	58, 543
PleI	GAGTC	2 cut(s)	226, 235
PpsI	GAGTC	2 cut(s)	226, 235
Psp6I	CCWGG	1 cut(s)	313
PspFI	CCCAGC	1 cut(s)	244
PspGI	CCWGG	1 cut(s)	313
PvuII	CAGCTG	1 cut(s)	244
RsaI	GTAC	2 cut(s)	86, 203
RsaNI	GTAC	2 cut(s)	85, 202
SalI	GTCGAC	1 cut(s)	229
SatI	GCNGC	2 cut(s)	57, 542
Sau3AI	GATC	8 cut(s)	41, 78, 133, 238, 321, 375, 396, 424
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	2 cut(s)	226, 236
ScrFI	CCNGG	3 cut(s)	315, 344, 552
SetI	ASST	8 cut(s)	25, 65, 75, 211, 246, 303, 472, 576
SfaNI	GCATC	4 cut(s)	24, 262, 523, 528
SfcI	CTRYAG	2 cut(s)	337, 593
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	276, 429, 528, 562
SsiI	CCGC	2 cut(s)	51, 542
StyD4I	CCNGG	3 cut(s)	313, 342, 550
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	5 cut(s)	131, 171, 422, 587, 594
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	4 cut(s)	193, 230, 391, 444
TasI	AATT	4 cut(s)	276, 429, 528, 562
TatI	WGTACW	2 cut(s)	84, 201
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	1 cut(s)	195
TscAI	CASTG	1 cut(s)	310
TseFI	GTSAC	1 cut(s)	346
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	346
TspDTI	ATGAA	2 cut(s)	17, 117
TspRI	CASTG	1 cut(s)	310
XapI	RAATTY	1 cut(s)	429
XmiI	GTMKAC	3 cut(s)	108, 230, 589
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.