Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007618.1

Orthogroup ID

OG0017266

Physical Location & Seq

Genomic Coordinates Forward (+)

41648 .. 45644

Gene Structure 3997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007618.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atggggggcgtcgaaggtcgcagacggatagtgggatcacacaacggagcacccacctacatcaacatcaagatcaagtccccgaacgggcatgaagtatacttcaatgtgatgagaagcagtgaactgaggagggttatgattgtttcctgtgaccgactgtctttggaagtcaatgatattcgtttcgtgtataaaggtcattatgttttggccgaggagactccagatcagctgagaatggaagatggggatgtaattgatgcaatttcagtccaaccacgcaagatcaatgtcacagtcaatggcgaggctgatggacttctggaaaccatccaagagcctagtcagaacatgctctctattgagcaagctactgcttttaaagcagatcaagctaaagccataattctcatgacaatgcacatgaatgacgcgctccaaagtgaatacctcaatgaggaagacccaagatgtatcacaaggtttcatgagctcattggcgccatgaacgtagcgagaagcacaacaatatccttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD ubiquitin

Protein Analysis

180

Amino Acids

20.22

Weight (kDa)

5.38

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23400 FvH4_3g23400
rosa_chinensis	RchiOBHm_Chr5g0041191
rosa_laevigata	RLG00000034035
rosa_multiflora	Rmu_sc0001140.1_g000003 Rmu_sc0007618.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039450
rosa_rugosa	Rorug05G0190300.1
rosa_samantha	Rh5AG276400 Rh5BG281400 Rh5CG313400 Rh5DG289400
rosa_wichuraiana	Rw5G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	437
AclWI	GGATC	1 cut(s)	43
AcoI	YGGCCR	1 cut(s)	213
AcyI	GRCGYC	2 cut(s)	9, 504
AfiI	CCNNNNNNNGG	2 cut(s)	87, 460
AgsI	TTSAA	1 cut(s)	106
AhdI	GACNNNNNGTC	1 cut(s)	160
AluBI	AGCT	4 cut(s)	235, 374, 398, 496
AluI	AGCT	4 cut(s)	235, 374, 398, 496
Alw21I	GWGCWC	2 cut(s)	52, 498
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	43
AoxI	GGCC	1 cut(s)	213
AspLEI	GCGC	2 cut(s)	439, 506
BanI	GGYRCC	1 cut(s)	503
BanII	GRGCYC	1 cut(s)	498
BbsI	GAAGAC	1 cut(s)	471
Bbv12I	GWGCWC	2 cut(s)	52, 498
BccI	CCATC	3 cut(s)	242, 311, 341
BcoDI	GTCTC	1 cut(s)	215
BfaI	CTAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	507
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	505
BmsI	GCATC	1 cut(s)	253
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	210
BsaHI	GRCGYC	2 cut(s)	9, 504
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	2 cut(s)	87, 460
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	259, 333
BseLI	CCNNNNNNNGG	2 cut(s)	87, 460
BseMII	CTCAG	2 cut(s)	119, 227
BseRI	GAGGAG	2 cut(s)	145, 233
Bsh1236I	CGCG	1 cut(s)	437
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	503
BsiHKAI	GWGCWC	2 cut(s)	52, 498
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	2 cut(s)	87, 460
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	64
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	2 cut(s)	52, 498
Bsp143I	GATC	5 cut(s)	35, 72, 229, 288, 391
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	2 cut(s)	120, 228
BspFNI	CGCG	1 cut(s)	437
BspHI	TCATGA	2 cut(s)	414, 490
BspLI	GGNNCC	1 cut(s)	505
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	503
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	5 cut(s)	35, 72, 229, 288, 391
BssNAI	GTATAC	1 cut(s)	100
BssNI	GRCGYC	2 cut(s)	9, 504
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	162, 301
BstACI	GRCGYC	2 cut(s)	9, 504
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	2 cut(s)	128, 236
BstENI	CCTNNNNNAGG	1 cut(s)	458
BstF5I	GGATG	2 cut(s)	259, 333
BstFNI	CGCG	1 cut(s)	437
BstH2I	RGCGCY	1 cut(s)	507
BstHHI	GCGC	2 cut(s)	439, 506
BstKTI	GATC	5 cut(s)	38, 75, 232, 291, 394
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	5 cut(s)	35, 72, 229, 288, 391
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 395
BstNSI	RCATGY	1 cut(s)	358
BstUI	CGCG	1 cut(s)	437
BstV2I	GAAGAC	1 cut(s)	471
BstZ17I	GTATAC	1 cut(s)	100
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	2 cut(s)	259, 333
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	127
Cac8I	GCNNGC	1 cut(s)	372
CciI	TCATGA	2 cut(s)	414, 490
CfoI	GCGC	2 cut(s)	439, 506
CseI	GACGC	1 cut(s)	443
CviAII	CATG	6 cut(s)	92, 355, 415, 427, 491, 508
CviJI	RGCY	8 cut(s)	215, 235, 314, 343, 374, 398, 404, 496
CviKI_1	RGCY	8 cut(s)	215, 235, 314, 343, 374, 398, 404, 496
DdeI	CTNAG	2 cut(s)	128, 236
DinI	GGCGCC	1 cut(s)	505
DpnI	GATC	5 cut(s)	37, 74, 231, 290, 393
DpnII	GATC	5 cut(s)	35, 72, 229, 288, 391
DraI	TTTAAA	1 cut(s)	385
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	496
Eco24I	GRGCYC	1 cut(s)	498
Eco53kI	GAGCTC	1 cut(s)	496
EcoICRI	GAGCTC	1 cut(s)	496
EcoNI	CCTNNNNNAGG	1 cut(s)	458
EcoT38I	GRGCYC	1 cut(s)	498
EgeI	GGCGCC	1 cut(s)	505
EheI	GGCGCC	1 cut(s)	505
FaeI	CATG	6 cut(s)	95, 358, 418, 430, 494, 511
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	6 cut(s)	91, 354, 414, 426, 490, 507
FblI	GTMKAC	1 cut(s)	99
FokI	GGATG	2 cut(s)	266, 320
FriOI	GRGCYC	1 cut(s)	498
FspBI	CTAG	1 cut(s)	345
GlaI	GCGC	2 cut(s)	438, 505
GsuI	CTGGAG	1 cut(s)	210
HaeII	RGCGCY	1 cut(s)	507
HaeIII	GGCC	1 cut(s)	215
HgaI	GACGC	1 cut(s)	443
HhaI	GCGC	2 cut(s)	439, 506
Hin1I	GRCGYC	2 cut(s)	9, 504
Hin1II	CATG	6 cut(s)	95, 358, 418, 430, 494, 511
Hin6I	GCGC	2 cut(s)	437, 504
HinP1I	GCGC	2 cut(s)	437, 504
HinfI	GANTC	1 cut(s)	223
Hpy166II	GTNNAC	2 cut(s)	100, 125
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	5 cut(s)	70, 227, 326, 415, 491
Hpy8I	GTNNAC	2 cut(s)	100, 125
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	162, 301
HpyCH4IV	ACGT	1 cut(s)	513
HpyCH4V	TGCA	2 cut(s)	266, 424
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 395
HpyF3I	CTNAG	2 cut(s)	128, 236
HpySE526I	ACGT	1 cut(s)	513
Hsp92I	GRCGYC	2 cut(s)	9, 504
Hsp92II	CATG	6 cut(s)	95, 358, 418, 430, 494, 511
HspAI	GCGC	2 cut(s)	437, 504
KasI	GGCGCC	1 cut(s)	503
Kzo9I	GATC	5 cut(s)	35, 72, 229, 288, 391
LmnI	GCTCC	2 cut(s)	47, 444
LpnPI	CCDG	3 cut(s)	163, 240, 311
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	1 cut(s)	345
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	2 cut(s)	152, 295
MalI	GATC	5 cut(s)	37, 74, 231, 290, 393
MboI	GATC	5 cut(s)	35, 72, 229, 288, 391
MboII	GAAGA	2 cut(s)	257, 476
MhlI	GDGCHC	2 cut(s)	52, 498
MluCI	AATT	3 cut(s)	258, 267, 408
Mly113I	GGCGCC	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	6 cut(s)	123, 126, 211, 304, 454, 464
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	419, 429
MspA1I	CMGCKG	1 cut(s)	235
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	386, 395
NarI	GGCGCC	1 cut(s)	504
NdeII	GATC	5 cut(s)	35, 72, 229, 288, 391
NlaIII	CATG	6 cut(s)	95, 358, 418, 430, 494, 511
NlaIV	GGNNCC	1 cut(s)	505
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	2 cut(s)	152, 295
NspI	RCATGY	1 cut(s)	358
PagI	TCATGA	2 cut(s)	414, 490
PleI	GAGTC	1 cut(s)	217
PluTI	GGCGCC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	217
Psp124BI	GAGCTC	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	505
PvuII	CAGCTG	1 cut(s)	235
RseI	CAYNNNNRTG	2 cut(s)	419, 429
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	384
Sau3AI	GATC	5 cut(s)	35, 72, 229, 288, 391
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	2 cut(s)	52, 498
SfaNI	GCATC	1 cut(s)	253
SfoI	GGCGCC	1 cut(s)	505
SmiMI	CAYNNNNRTG	2 cut(s)	419, 429
Sse9I	AATT	3 cut(s)	258, 267, 408
SspDI	GGCGCC	1 cut(s)	503
SspMI	CTAG	1 cut(s)	345
SstI	GAGCTC	1 cut(s)	498
TaaI	ACNGT	2 cut(s)	162, 301
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	1 cut(s)	12
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	3 cut(s)	258, 267, 408
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	1 cut(s)	127
TseFI	GTSAC	2 cut(s)	152, 295
Tsp45I	GTSAC	2 cut(s)	152, 295
TspDTI	ATGAA	4 cut(s)	108, 443, 479, 524
TspGWI	ACGGA	2 cut(s)	40, 60
TspRI	CASTG	1 cut(s)	127
XagI	CCTNNNNNAGG	1 cut(s)	458
XceI	RCATGY	1 cut(s)	358
XmiI	GTMKAC	1 cut(s)	99
XspI	CTAG	1 cut(s)	345

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.