Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0017266

Physical Location & Seq

Genomic Coordinates Reverse (-)

35620752 .. 35622316

Gene Structure 1565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034035

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGGGGCTGTCGAAGGTCGCAGACGGATAGTGGGATCACACAACGGAGCACCCACCTACATCAACCTCAAGATCAAGTCCCCGAACGGGCATGAAGTATACTTCAATGTGATGAGAAGCAGTGAACTGAGGAGGGTTATGATTGTTTCCTGTGACCGAATGTCTTTGGAAGCCAATGATATTCGTTTCGTGTATAAAGGTCATTATGTTTTGGCCGAGGAGACTCCAGATCAGCTGAGAATGGAAGATGGGGATGTAATTGATGCAATTTCAGTCCAACCACGCAAGATCAATGTCACAGTCGATGGCGAGTTCACGGAAAATCAAAACATAGTGTGCTTCAGGATCAAGAAAGGCATTCAACTGAAAAGGCTTATGACTGCTTACTGTGATCGATATTCACTGCATGTCACTTGCTTTGCTTTTTTGTGGAATGGCTGTCGGCTTCATTACGATCAAACTCCAGATGAGTTGAAAATGGAAGATGGGGAAGAAATTTTTGCGATGCCGCACCTGCCCCGTTGTGAAAATTGTCGCCAGCTGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016925 GO:0018193 GO:0018205 GO:0019538 GO:0031386 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0070647 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko03013 ko05418 map03013 map05418

Pfam Domains

Protein Families

Rad60-SLD ubiquitin

Protein Analysis

183

Amino Acids

21.1

Weight (kDa)

6.59

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	21 - 90	1.6e-11	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	107 - 169	2.8e-06	Ubiquitin family
Rad60-SLD	PF11976	111 - 166	4.2e-08	Ubiquitin-2 like Rad60 SUMO-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017266)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g23400 FvH4_3g23400
rosa_chinensis	RchiOBHm_Chr5g0041191
rosa_laevigata	RLG00000034035
rosa_multiflora	Rmu_sc0001140.1_g000003 Rmu_sc0007618.1_g000013
rosa_roxburghii	Rroxscaffold_1G00039450
rosa_rugosa	Rorug05G0190300.1
rosa_samantha	Rh5AG276400 Rh5BG281400 Rh5CG313400 Rh5DG289400
rosa_wichuraiana	Rw5G026000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	522
Acc36I	ACCTGC	1 cut(s)	522
AccI	GTMKAC	1 cut(s)	99
AciI	CCGC	1 cut(s)	509
AclWI	GGATC	2 cut(s)	43, 353
AcoI	YGGCCR	1 cut(s)	213
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	325
AfiI	CCNNNNNNNGG	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	106, 362, 475
AhdI	GACNNNNNGTC	1 cut(s)	160
AluBI	AGCT	2 cut(s)	235, 541
AluI	AGCT	2 cut(s)	235, 541
Alw21I	GWGCWC	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	2 cut(s)	43, 353
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	1 cut(s)	541
ApoI	RAATTY	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	52
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	3 cut(s)	242, 299, 479
BcoDI	GTCTC	1 cut(s)	215
BfmI	CTRYAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	522
BisI	GCNGC	2 cut(s)	509, 542
BlsI	GCNGC	2 cut(s)	510, 543
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmsI	GCATC	2 cut(s)	253, 495
BpmI	CTGGAG	2 cut(s)	210, 447
BpuEI	CTTGAG	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	394
BsaJI	CCNNGG	1 cut(s)	216
Bsc4I	CCNNNNNNNGG	1 cut(s)	87
BseCI	ATCGAT	1 cut(s)	394
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	1 cut(s)	87
BseMII	CTCAG	2 cut(s)	119, 227
BseRI	GAGGAG	2 cut(s)	145, 233
BseXI	GCAGC	1 cut(s)	528
BshFI	GGCC	1 cut(s)	215
BshVI	ATCGAT	1 cut(s)	394
BsiHKAI	GWGCWC	1 cut(s)	52
BslFI	GGGAC	1 cut(s)	64
BslI	CCNNNNNNNGG	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	64
BsmI	GAATGC	1 cut(s)	357
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	52
Bsp143I	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
BspACI	CCGC	1 cut(s)	509
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	2 cut(s)	120, 228
BspDI	ATCGAT	1 cut(s)	394
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	522
BspPI	GGATC	2 cut(s)	43, 353
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
BssNAI	GTATAC	1 cut(s)	100
Bst1107I	GTATAC	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	301, 389
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	2 cut(s)	128, 236
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	7 cut(s)	38, 75, 232, 291, 348, 394, 457
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	542
BstV1I	GCAGC	1 cut(s)	528
BstZ17I	GTATAC	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	394
BsuRI	GGCC	1 cut(s)	215
BsuTUI	ATCGAT	1 cut(s)	394
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	2 cut(s)	127, 401
BtsIMutI	CAGTG	2 cut(s)	127, 401
BveI	ACCTGC	1 cut(s)	522
Cac8I	GCNNGC	1 cut(s)	539
ClaI	ATCGAT	1 cut(s)	394
CviAII	CATG	2 cut(s)	92, 407
CviJI	RGCY	8 cut(s)	8, 173, 215, 235, 373, 438, 445, 541
CviKI_1	RGCY	8 cut(s)	8, 173, 215, 235, 373, 438, 445, 541
DdeI	CTNAG	2 cut(s)	128, 236
DpnI	GATC	7 cut(s)	37, 74, 231, 290, 347, 393, 456
DpnII	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
DriI	GACNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	213
Eam1105I	GACNNNNNGTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	325
FaeI	CATG	2 cut(s)	95, 410
FaiI	YATR	8 cut(s)	93, 100, 140, 195, 207, 332, 377, 408
FaqI	GGGAC	1 cut(s)	64
FatI	CATG	2 cut(s)	91, 406
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	509, 542
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	2 cut(s)	509, 542
GluI	GCNGC	2 cut(s)	509, 542
GsuI	CTGGAG	2 cut(s)	210, 447
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	95, 410
HinfI	GANTC	1 cut(s)	223
Hpy166II	GTNNAC	3 cut(s)	100, 125, 315
Hpy188III	TCNNGA	5 cut(s)	70, 227, 343, 349, 464
Hpy8I	GTNNAC	3 cut(s)	100, 125, 315
HpyAV	CCTTC	1 cut(s)	8
HpyCH4III	ACNGT	2 cut(s)	301, 389
HpyCH4V	TGCA	3 cut(s)	266, 406, 544
HpyF10VI	GCNNNNNNNGC	1 cut(s)	514
HpyF3I	CTNAG	2 cut(s)	128, 236
Hsp92II	CATG	2 cut(s)	95, 410
Kzo9I	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
LmnI	GCTCC	1 cut(s)	47
LpnPI	CCDG	5 cut(s)	163, 240, 328, 477, 527
Lsp1109I	GCAGC	1 cut(s)	528
LweI	GCATC	2 cut(s)	253, 495
MaeIII	GTNAC	3 cut(s)	152, 295, 409
MalI	GATC	7 cut(s)	37, 74, 231, 290, 347, 393, 456
MboI	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
MboII	GAAGA	3 cut(s)	257, 494, 503
MhlI	GDGCHC	1 cut(s)	52
MluCI	AATT	4 cut(s)	258, 267, 495, 529
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	4 cut(s)	77, 123, 126, 211
MspA1I	CMGCKG	2 cut(s)	235, 541
Mva1269I	GAATGC	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	514
NdeII	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
NlaIII	CATG	2 cut(s)	95, 410
NmeAIII	GCCGAG	1 cut(s)	241
NmuCI	GTSAC	3 cut(s)	152, 295, 409
NspI	RCATGY	1 cut(s)	410
PaqCI	CACCTGC	1 cut(s)	522
PctI	GAATGC	1 cut(s)	357
PkrI	GCNGC	2 cut(s)	510, 543
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PstI	CTGCAG	1 cut(s)	546
PvuII	CAGCTG	2 cut(s)	235, 541
SatI	GCNGC	2 cut(s)	509, 542
Sau3AI	GATC	7 cut(s)	35, 72, 229, 288, 345, 391, 454
SchI	GAGTC	1 cut(s)	217
SduI	GDGCHC	1 cut(s)	52
SetI	ASST	7 cut(s)	19, 59, 69, 202, 237, 516, 543
SfaNI	GCATC	2 cut(s)	253, 495
SfcI	CTRYAG	1 cut(s)	542
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	4 cut(s)	258, 267, 495, 529
SsiI	CCGC	1 cut(s)	509
TaaI	ACNGT	2 cut(s)	301, 389
TaqI	TCGA	3 cut(s)	12, 303, 394
TaqII	GACCGA	1 cut(s)	171
TasI	AATT	4 cut(s)	258, 267, 495, 529
TauI	GCSGC	1 cut(s)	511
TscAI	CASTG	2 cut(s)	127, 408
TseFI	GTSAC	3 cut(s)	152, 295, 409
TseI	GCWGC	1 cut(s)	541
Tsp45I	GTSAC	3 cut(s)	152, 295, 409
TspDTI	ATGAA	2 cut(s)	108, 437
TspGWI	ACGGA	3 cut(s)	40, 60, 332
TspRI	CASTG	2 cut(s)	127, 408
XapI	RAATTY	1 cut(s)	495
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.