Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0022201

Physical Location & Seq

Genomic Coordinates Forward (+)

29724314 .. 29724544

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAACAACCACCACGACTGGTACGCCATTCTCCAGCTAGATCGCCGATCCGACGACCTCGATCTGATCAAGAAGTCGTACCGACGGCTGGCGTTGCTGCTCCACCCGGACAAGAACAAGTACGCATTCGCCGACCACCCCTTCCAGCTCATCGCCGATGCATGGGCCGTTCTGTCCGATCCGACCCGGAAGACACCGAAGATGGTGCGGACCTCGTCGTTGGCGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

77

Amino Acids

8.86

Weight (kDa)

9.45

Isoelectric Point (pI)

44.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	6 - 64	3.1e-17	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34240
rosa_multiflora	Rmu_sc0004502.1_g000007
rosa_samantha	Rh4AG208000 Rh6AG416600

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	208, 224
AclWI	GGATC	2 cut(s)	42, 173
AfaI	GTAC	3 cut(s)	23, 80, 122
AfiI	CCNNNNNNNGG	2 cut(s)	88, 162
AluBI	AGCT	2 cut(s)	37, 148
AluI	AGCT	2 cut(s)	37, 148
AlwI	GGATC	2 cut(s)	42, 173
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	97
AspS9I	GGNCC	2 cut(s)	165, 210
AsuC2I	CCSGG	2 cut(s)	107, 187
AvaII	GGWCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	84
BccI	CCATC	1 cut(s)	196
BceAI	ACGGC	2 cut(s)	101, 152
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BclI	TGATCA	1 cut(s)	66
BcnI	CCSGG	2 cut(s)	107, 187
BfaI	CTAG	1 cut(s)	38
BisI	GCNGC	1 cut(s)	98
BlsI	GCNGC	1 cut(s)	99
Bme1390I	CCNGG	2 cut(s)	107, 187
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	165, 210
BmrFI	CCNGG	2 cut(s)	107, 187
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	17
BpuMI	CCSGG	2 cut(s)	107, 187
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 162
Bse1I	ACTGG	1 cut(s)	23
BseLI	CCNNNNNNNGG	2 cut(s)	88, 162
BseNI	ACTGG	1 cut(s)	23
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	167
BsiSI	CCGG	2 cut(s)	107, 187
BslI	CCNNNNNNNGG	2 cut(s)	88, 162
BsmI	GAATGC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	40, 47, 61, 66, 178
BspACI	CCGC	2 cut(s)	208, 224
BspANI	GGCC	1 cut(s)	167
BspPI	GGATC	2 cut(s)	42, 173
BsrI	ACTGG	1 cut(s)	23
BssMI	GATC	5 cut(s)	40, 47, 61, 66, 178
BstC8I	GCNNGC	1 cut(s)	90
BstKTI	GATC	5 cut(s)	43, 50, 64, 69, 181
BstMBI	GATC	5 cut(s)	40, 47, 61, 66, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstSCI	CCNGG	2 cut(s)	105, 185
BstV1I	GCAGC	1 cut(s)	84
BstV2I	GAAGAC	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	136
Cac8I	GCNNGC	1 cut(s)	90
Cfr13I	GGNCC	2 cut(s)	165, 210
Csp6I	GTAC	3 cut(s)	22, 79, 121
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	4 cut(s)	37, 88, 148, 167
CviKI_1	RGCY	4 cut(s)	37, 88, 148, 167
CviQI	GTAC	3 cut(s)	22, 79, 121
DpnI	GATC	5 cut(s)	42, 49, 63, 68, 180
DpnII	GATC	5 cut(s)	40, 47, 61, 66, 178
Eco47I	GGWCC	1 cut(s)	210
EcoT22I	ATGCAT	1 cut(s)	163
FaeI	CATG	1 cut(s)	165
FaiI	YATR	1 cut(s)	163
FatI	CATG	1 cut(s)	161
FauI	CCCGC	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	66
Fnu4HI	GCNGC	1 cut(s)	98
Fsp4HI	GCNGC	1 cut(s)	98
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	2 cut(s)	107, 187
Hin1II	CATG	1 cut(s)	165
HpaII	CCGG	2 cut(s)	107, 187
Hpy188I	TCNGA	4 cut(s)	52, 66, 178, 183
Hpy188III	TCNNGA	1 cut(s)	70
Hpy99I	CGWCG	3 cut(s)	56, 87, 220
HpyAV	CCTTC	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	161
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	165
Ksp22I	TGATCA	1 cut(s)	66
Kzo9I	GATC	5 cut(s)	40, 47, 61, 66, 178
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	6 cut(s)	4, 47, 74, 120, 158, 200
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	38
MalI	GATC	5 cut(s)	42, 49, 63, 68, 180
MboI	GATC	5 cut(s)	40, 47, 61, 66, 178
MboII	GAAGA	2 cut(s)	202, 211
MmeI	TCCRAC	2 cut(s)	75, 206
MnlI	CCTC	2 cut(s)	68, 223
Mph1103I	ATGCAT	1 cut(s)	163
MspI	CCGG	2 cut(s)	107, 187
MspR9I	CCNGG	2 cut(s)	107, 187
Mva1269I	GAATGC	1 cut(s)	125
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	2 cut(s)	107, 187
NdeII	GATC	5 cut(s)	40, 47, 61, 66, 178
NlaIII	CATG	1 cut(s)	165
NsiI	ATGCAT	1 cut(s)	163
PcsI	WCGNNNNNNNCGW	1 cut(s)	129
PctI	GAATGC	1 cut(s)	125
PflFI	GACNNNGTC	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	165, 210
PsyI	GACNNNGTC	1 cut(s)	214
RsaI	GTAC	3 cut(s)	23, 80, 122
RsaNI	GTAC	3 cut(s)	22, 79, 121
SatI	GCNGC	1 cut(s)	98
Sau3AI	GATC	5 cut(s)	40, 47, 61, 66, 178
Sau96I	GGNCC	2 cut(s)	165, 210
ScrFI	CCNGG	2 cut(s)	107, 187
SetI	ASST	4 cut(s)	39, 60, 150, 215
SfaNI	GCATC	1 cut(s)	148
SinI	GGWCC	1 cut(s)	210
SsiI	CCGC	2 cut(s)	208, 224
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	105, 185
TaqI	TCGA	1 cut(s)	60
TseI	GCWGC	1 cut(s)	97
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	214
VpaK11BI	GGWCC	1 cut(s)	210
XspI	CTAG	1 cut(s)	38
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.