Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0022201

Physical Location & Seq

Genomic Coordinates Forward (+)

49789359 .. 49794647

Gene Structure 5289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG208000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGGGCAGATGCAGACAACGGTTCAACTGCCTTTTCTAACTTTCAGTATGCTAAAGAACAGCTTGAGTAATTTGTGTTTGATATGTAACTTCAACAATTTGGGTTTCCACAATGACTACCAAGAGAAAGATTCGTCCGATCAGATCTTAGCAGTCCTCGACGTCCTTCTAGCCTCCGGTAAGCGCGTAAACAACCACCACGACTGGTACTCCATTCTCCAGGTGGATCACCGATCCGACGACCACGATCTGATCAAGAGATCGTATCGACGGCTGGTGTTGCTCCTCCAACTAGACAAGAACAAATACTCCTTCGCCGAGCACGCCTTCAAGCTCGTCGCCGATGCATGGGCCGTTCTCTCCGACCCGGCCAAGAAGCCGGTCTTCGACACCGAGCTGGGCCTCTACAGCCCACTCGATCTCACCGCCGCCGCAGCAGCCTTCAATCCGAACAAGCTTCGGGTGCGGCAGGGGCAGAATGCTCGAAACTGTCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

166

Amino Acids

18.94

Weight (kDa)

8.44

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	68 - 130	6.4e-13	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34240
rosa_multiflora	Rmu_sc0004502.1_g000007
rosa_samantha	Rh4AG208000 Rh6AG416600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	165
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	426, 429, 432, 466
AclWI	GGATC	2 cut(s)	228, 234
AcoI	YGGCCR	1 cut(s)	369
AcyI	GRCGYC	1 cut(s)	162
AfaI	GTAC	1 cut(s)	209
AfiI	CCNNNNNNNGG	1 cut(s)	348
AgsI	TTSAA	4 cut(s)	26, 94, 331, 445
AjnI	CCWGG	1 cut(s)	219
AloI	GAACNNNNNNTCC	2 cut(s)	293, 325
AluBI	AGCT	4 cut(s)	63, 334, 397, 457
AluI	AGCT	4 cut(s)	63, 334, 397, 457
Alw21I	GWGCWC	1 cut(s)	324
AlwI	GGATC	2 cut(s)	228, 234
AoxI	GGCC	3 cut(s)	351, 369, 400
ApeKI	GCWGC	2 cut(s)	434, 437
AspLEI	GCGC	1 cut(s)	186
AspS9I	GGNCC	2 cut(s)	351, 400
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	2 cut(s)	221, 415
BbsI	GAAGAC	1 cut(s)	376
Bbv12I	GWGCWC	1 cut(s)	324
BbvI	GCAGC	2 cut(s)	446, 449
BceAI	ACGGC	2 cut(s)	287, 338
BcgI	CGANNNNNNTGC	2 cut(s)	464, 498
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	252
BcnI	CCSGG	1 cut(s)	368
BfaI	CTAG	3 cut(s)	170, 293, 499
BfmI	CTRYAG	1 cut(s)	406
BglII	AGATCT	1 cut(s)	144
BisI	GCNGC	5 cut(s)	429, 432, 435, 438, 467
BlsI	GCNGC	5 cut(s)	430, 433, 436, 439, 468
Bme1390I	CCNGG	2 cut(s)	221, 368
BmgT120I	GGNCC	2 cut(s)	351, 400
BmrFI	CCNGG	2 cut(s)	221, 368
BmsI	GCATC	1 cut(s)	334
BpiI	GAAGAC	1 cut(s)	376
BpmI	CTGGAG	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	85
BpuMI	CCSGG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	176
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 293, 323
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	209
BseBI	CCWGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	275
BseXI	GCAGC	2 cut(s)	446, 449
BseYI	CCCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	353, 371, 402
BsiHKAI	GWGCWC	1 cut(s)	324
BsiSI	CCGG	3 cut(s)	177, 368, 380
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmI	GAATGC	1 cut(s)	484
BsnI	GGCC	3 cut(s)	353, 371, 402
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
BspACI	CCGC	4 cut(s)	426, 429, 432, 466
BspANI	GGCC	3 cut(s)	353, 371, 402
BspFNI	CGCG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	228, 234
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	1 cut(s)	209
BssAI	RCCGGY	1 cut(s)	379
BssMI	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
BssNI	GRCGYC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	2 cut(s)	22, 491
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	148
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	186
BstKTI	GATC	8 cut(s)	142, 147, 229, 236, 250, 255, 263, 421
BstMBI	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
BstMWI	GCNNNNNNNGC	7 cut(s)	280, 323, 408, 434, 437, 463, 472
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	2 cut(s)	219, 366
BstSFI	CTRYAG	1 cut(s)	406
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	446, 449
BstV2I	GAAGAC	1 cut(s)	376
BstX2I	RGATCY	1 cut(s)	144
BstYI	RGATCY	1 cut(s)	144
BsuRI	GGCC	3 cut(s)	353, 371, 402
Cac8I	GCNNGC	1 cut(s)	324
CfoI	GCGC	1 cut(s)	186
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	351, 400
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	1 cut(s)	348
CviQI	GTAC	1 cut(s)	208
DdeI	CTNAG	1 cut(s)	148
DpnI	GATC	8 cut(s)	141, 146, 228, 235, 249, 254, 262, 420
DpnII	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
EaeI	YGGCCR	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	219
EcoT22I	ATGCAT	1 cut(s)	349
FaeI	CATG	1 cut(s)	351
FaiI	YATR	3 cut(s)	50, 85, 349
FalI	AAGNNNNNCTT	4 cut(s)	47, 79, 368, 400
FatI	CATG	1 cut(s)	347
FbaI	TGATCA	1 cut(s)	252
Fnu4HI	GCNGC	5 cut(s)	429, 432, 435, 438, 467
Fsp4HI	GCNGC	5 cut(s)	429, 432, 435, 438, 467
FspBI	CTAG	3 cut(s)	170, 293, 499
GlaI	GCGC	1 cut(s)	185
GluI	GCNGC	5 cut(s)	429, 432, 435, 438, 467
GsaI	CCCAGC	1 cut(s)	401
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	353, 371, 402
HapII	CCGG	3 cut(s)	177, 368, 380
HhaI	GCGC	1 cut(s)	186
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	351
Hin6I	GCGC	1 cut(s)	184
HinP1I	GCGC	1 cut(s)	184
HindIII	AAGCTT	1 cut(s)	455
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	3 cut(s)	177, 368, 380
HphI	GGTGA	2 cut(s)	221, 415
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	6 cut(s)	139, 144, 238, 252, 364, 450
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	1 cut(s)	190
Hpy99I	CGWCG	4 cut(s)	164, 242, 273, 341
HpyAV	CCTTC	4 cut(s)	176, 322, 337, 451
HpyCH4III	ACNGT	2 cut(s)	22, 491
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	13, 347
HpyF10VI	GCNNNNNNNGC	7 cut(s)	280, 323, 408, 434, 437, 463, 472
HpyF3I	CTNAG	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	162
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	351
HspAI	GCGC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	252
Kzo9I	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
LmnI	GCTCC	1 cut(s)	288
LpnPI	CCDG	9 cut(s)	190, 190, 206, 233, 260, 381, 383, 393, 455
Lsp1109I	GCAGC	2 cut(s)	446, 449
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	3 cut(s)	170, 293, 499
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	8 cut(s)	141, 146, 228, 235, 249, 254, 262, 420
MboI	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
MboII	GAAGA	1 cut(s)	376
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	2 cut(s)	70, 97
MmeI	TCCRAC	3 cut(s)	261, 313, 387
MnlI	CCTC	4 cut(s)	167, 184, 296, 413
Mph1103I	ATGCAT	1 cut(s)	349
MspI	CCGG	3 cut(s)	177, 368, 380
MspR9I	CCNGG	2 cut(s)	221, 368
Mva1269I	GAATGC	1 cut(s)	484
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	7 cut(s)	280, 323, 408, 434, 437, 463, 472
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
NlaIII	CATG	1 cut(s)	351
NmeAIII	GCCGAG	1 cut(s)	343
NsiI	ATGCAT	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	490
PctI	GAATGC	1 cut(s)	484
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	430, 433, 436, 439, 468
Psp6I	CCWGG	1 cut(s)	219
PspFI	CCCAGC	1 cut(s)	397
PspGI	CCWGG	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	351, 400
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SatI	GCNGC	5 cut(s)	429, 432, 435, 438, 467
Sau3AI	GATC	8 cut(s)	139, 144, 226, 233, 247, 252, 260, 418
Sau96I	GGNCC	2 cut(s)	351, 400
ScrFI	CCNGG	2 cut(s)	221, 368
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	6 cut(s)	65, 165, 225, 336, 399, 459
SfaNI	GCATC	1 cut(s)	334
SfcI	CTRYAG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
Sse9I	AATT	2 cut(s)	70, 97
SsiI	CCGC	4 cut(s)	426, 429, 432, 466
SspMI	CTAG	3 cut(s)	170, 293, 499
StyD4I	CCNGG	2 cut(s)	219, 366
TaaI	ACNGT	2 cut(s)	22, 491
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	6 cut(s)	159, 268, 387, 417, 484, 493
TasI	AATT	2 cut(s)	70, 97
TauI	GCSGC	3 cut(s)	431, 434, 469
TfiI	GAWTC	1 cut(s)	131
TseI	GCWGC	2 cut(s)	434, 437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	220
XspI	CTAG	3 cut(s)	170, 293, 499
ZraI	GACGTC	1 cut(s)	163
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.