Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0022201

Physical Location & Seq

Genomic Coordinates Reverse (-)

61129241 .. 61130824

Gene Structure 1584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG416600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAAGAAACTGTAGGAAATGGTAATTGCATTGTTGGTGGTGCTGAAGTTCTTGATGGTGACAATGATGGTTTCAATTCTCTGAGCAGTTCGCATGACTTTGCCATTCTCATGCAAGCAACAGAGCGCGTAAACAACCACCACGACTGGTACTCCATTCTCCAGGTGGATCACCGATCCGACGACCACGATCTGATCAAGAGATCGTATCGACGGCTGGTGTTGCTCCTCCAACCAGACAAGAACAAATACTCCTTCGCCGAGCACGCCTTCAAGCTCGTCGCCGATGCATGGGTCGTTCTCTCCGACCCGGCCAAAAAGCCGGTCTTCGACACCGAGCTGGGCCTCTACAGCCCACTCGATCTCACCGCCGCCGCAGCAGCCTCCAATCCGAACAAGCTTCCGGTGCGGCAGGGGCAGAATGCTCGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008047 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0019538 GO:0019941 GO:0030163 GO:0030234 GO:0030433 GO:0031984 GO:0032781 GO:0033554 GO:0034976 GO:0036503 GO:0042175 GO:0042221 GO:0043085 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043462 GO:0043632 GO:0044093 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0050790 GO:0050896 GO:0051336 GO:0051345 GO:0051603 GO:0051716 GO:0060589 GO:0060590 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:0098827 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ

Protein Analysis

144

Amino Acids

15.99

Weight (kDa)

5.39

Isoelectric Point (pI)

38.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	49 - 111	1.3e-15	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022201)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g34240
rosa_multiflora	Rmu_sc0004502.1_g000007
rosa_samantha	Rh4AG208000 Rh6AG416600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	129
AciI	CCGC	4 cut(s)	369, 372, 375, 409
AclWI	GGATC	2 cut(s)	171, 177
AcoI	YGGCCR	1 cut(s)	312
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	2 cut(s)	76, 274
AjnI	CCWGG	1 cut(s)	162
AloI	GAACNNNNNNTCC	2 cut(s)	236, 268
AluBI	AGCT	3 cut(s)	277, 340, 400
AluI	AGCT	3 cut(s)	277, 340, 400
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	171, 177
AoxI	GGCC	2 cut(s)	312, 343
ApeKI	GCWGC	2 cut(s)	377, 380
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	311
AsuHPI	GGTGA	3 cut(s)	71, 164, 358
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	389, 392
BccI	CCATC	2 cut(s)	50, 62
BceAI	ACGGC	1 cut(s)	230
BcgI	CGANNNNNNTGC	1 cut(s)	407
BciT130I	CCWGG	1 cut(s)	164
BclI	TGATCA	1 cut(s)	195
BcnI	CCSGG	1 cut(s)	311
BfaI	CTAG	1 cut(s)	433
BfmI	CTRYAG	2 cut(s)	12, 349
BisI	GCNGC	5 cut(s)	372, 375, 378, 381, 410
BlsI	GCNGC	5 cut(s)	373, 376, 379, 382, 411
Bme1390I	CCNGG	2 cut(s)	164, 311
BmgT120I	GGNCC	1 cut(s)	343
BmrFI	CCNGG	2 cut(s)	164, 311
BmsI	GCATC	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	319
BpmI	CTGGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	311
BsaWI	WCCGGW	1 cut(s)	403
BsaXI	ACNNNNNCTCC	4 cut(s)	137, 167, 236, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
Bse118I	RCCGGY	1 cut(s)	322
Bse1I	ACTGG	1 cut(s)	152
BseBI	CCWGG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseMII	CTCAG	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	1 cut(s)	218
BseXI	GCAGC	2 cut(s)	389, 392
BseYI	CCCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	314, 345
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	3 cut(s)	311, 323, 404
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	2 cut(s)	314, 345
Bsp1286I	GDGCHC	1 cut(s)	267
Bsp143I	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
BspACI	CCGC	4 cut(s)	369, 372, 375, 409
BspANI	GGCC	2 cut(s)	314, 345
BspCNI	CTCAG	1 cut(s)	75
BspFNI	CGCG	1 cut(s)	129
BspPI	GGATC	2 cut(s)	171, 177
BsrFI	RCCGGY	1 cut(s)	322
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	322
BssMI	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
Bst2UI	CCWGG	1 cut(s)	164
Bst4CI	ACNGT	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	117, 267
BstDEI	CTNAG	1 cut(s)	83
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	6 cut(s)	172, 179, 193, 198, 206, 364
BstMBI	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
BstMWI	GCNNNNNNNGC	7 cut(s)	223, 266, 351, 377, 380, 406, 415
BstNI	CCWGG	1 cut(s)	164
BstSCI	CCNGG	2 cut(s)	162, 309
BstSFI	CTRYAG	2 cut(s)	12, 349
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	389, 392
BstV2I	GAAGAC	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	314, 345
Cac8I	GCNNGC	2 cut(s)	117, 267
CfoI	GCGC	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	322
Cfr13I	GGNCC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	95, 112, 291
CviJI	RGCY	9 cut(s)	217, 277, 314, 322, 340, 345, 354, 383, 400
CviKI_1	RGCY	9 cut(s)	217, 277, 314, 322, 340, 345, 354, 383, 400
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	6 cut(s)	171, 178, 192, 197, 205, 363
DpnII	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
EaeI	YGGCCR	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	292
FaeI	CATG	3 cut(s)	98, 115, 294
FaiI	YATR	3 cut(s)	96, 113, 292
FalI	AAGNNNNNCTT	2 cut(s)	311, 343
FatI	CATG	3 cut(s)	94, 111, 290
FbaI	TGATCA	1 cut(s)	195
Fnu4HI	GCNGC	5 cut(s)	372, 375, 378, 381, 410
Fsp4HI	GCNGC	5 cut(s)	372, 375, 378, 381, 410
FspBI	CTAG	1 cut(s)	433
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	5 cut(s)	372, 375, 378, 381, 410
GsaI	CCCAGC	1 cut(s)	344
GsuI	CTGGAG	1 cut(s)	146
HaeIII	GGCC	2 cut(s)	314, 345
HapII	CCGG	3 cut(s)	311, 323, 404
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	98, 115, 294
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	398
HpaII	CCGG	3 cut(s)	311, 323, 404
HphI	GGTGA	3 cut(s)	71, 164, 358
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	5 cut(s)	84, 181, 195, 307, 393
Hpy188III	TCNNGA	2 cut(s)	53, 199
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	3 cut(s)	185, 216, 284
HpyAV	CCTTC	2 cut(s)	265, 280
HpyCH4III	ACNGT	1 cut(s)	13
HpyCH4V	TGCA	3 cut(s)	30, 115, 290
HpyF10VI	GCNNNNNNNGC	7 cut(s)	223, 266, 351, 377, 380, 406, 415
HpyF3I	CTNAG	1 cut(s)	83
Hsp92II	CATG	3 cut(s)	98, 115, 294
HspAI	GCGC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	195
Kzo9I	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
LmnI	GCTCC	1 cut(s)	231
Lsp1109I	GCAGC	2 cut(s)	389, 392
LweI	GCATC	1 cut(s)	277
MaeI	CTAG	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	6 cut(s)	171, 178, 192, 197, 205, 363
MboI	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
MboII	GAAGA	2 cut(s)	17, 319
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	2 cut(s)	25, 76
MmeI	TCCRAC	3 cut(s)	204, 256, 330
MnlI	CCTC	3 cut(s)	239, 356, 394
Mph1103I	ATGCAT	1 cut(s)	292
MslI	CAYNNNNRTG	1 cut(s)	110
MspI	CCGG	3 cut(s)	311, 323, 404
MspR9I	CCNGG	2 cut(s)	164, 311
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	164
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	7 cut(s)	223, 266, 351, 377, 380, 406, 415
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
NlaIII	CATG	3 cut(s)	98, 115, 294
NmeAIII	GCCGAG	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PctI	GAATGC	1 cut(s)	427
PkrI	GCNGC	5 cut(s)	373, 376, 379, 382, 411
Psp6I	CCWGG	1 cut(s)	162
PspFI	CCCAGC	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	162
PspPI	GGNCC	1 cut(s)	343
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	110
SatI	GCNGC	5 cut(s)	372, 375, 378, 381, 410
Sau3AI	GATC	6 cut(s)	169, 176, 190, 195, 203, 361
Sau96I	GGNCC	1 cut(s)	343
ScrFI	CCNGG	2 cut(s)	164, 311
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	4 cut(s)	168, 279, 342, 402
SfaNI	GCATC	1 cut(s)	277
SfcI	CTRYAG	2 cut(s)	12, 349
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	2 cut(s)	25, 76
SsiI	CCGC	4 cut(s)	369, 372, 375, 409
SspMI	CTAG	1 cut(s)	433
StyD4I	CCNGG	2 cut(s)	162, 309
TaaI	ACNGT	1 cut(s)	13
TaqI	TCGA	4 cut(s)	211, 330, 360, 427
TasI	AATT	2 cut(s)	25, 76
TauI	GCSGC	3 cut(s)	374, 377, 412
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	377, 380
Tsp45I	GTSAC	1 cut(s)	59
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XspI	CTAG	1 cut(s)	433
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.