Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0022213

Physical Location & Seq

Genomic Coordinates Forward (+)

19174381 .. 19175011

Gene Structure 631 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15486.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGGATGGCATGGAGCGGCAAATGGAGGCAAAGAATTCGAAGCAAAGATCACTCCGCTCGTGGTAAGTTCTTGCTTAATGGCCGCTTCCGGTGGCCTCATGTTTGGCTATGATGTTGGTATATCAGGGGGTGTTACATCGATGCCCGATTTTCTGAAGAAATTCTTCCCAACGGTCTATAGAAATCAGCAAGTTCCAGGACTTACCGGCAATTACTGCAAATACGATAATCAAGGGCTACAGTTGTTCAAGTGTTGTCCAAGGGTTGTGCCTACGCCCCTGTCTGTTCGGATGAAAAATGTTGATATGCTCGATAAGTTTAGATCTCTCCAGTCTTGTGTTACATCCGGGTACAAAGCTAAAGTTAATCAAGTGGTAACTACAAGTTTCTATTACCAGTGTGTTTCCCTCGTCATTGATTCCTCCTTTTCATCTGATTTTGTAAGGTCCTTTTTCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

154

Amino Acids

16.85

Weight (kDa)

9.07

Isoelectric Point (pI)

35.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	25 - 66	1.6e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15486
malus_domestica	MD05G1077000.v1.1 MD16G1190500.v1.1
pyrus_communis	pycom16g15970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	17, 58
AciI	CCGC	3 cut(s)	17, 56, 84
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	2 cut(s)	35, 161
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	353
AgsI	TTSAA	1 cut(s)	250
AjnI	CCWGG	1 cut(s)	196
AluBI	AGCT	1 cut(s)	359
AluI	AGCT	1 cut(s)	359
AoxI	GGCC	2 cut(s)	81, 94
ApoI	RAATTY	2 cut(s)	35, 161
Asp700I	GAANNNNTTC	2 cut(s)	161, 164
AspS9I	GGNCC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	349
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	1 cut(s)	447
BauI	CACGAG	1 cut(s)	59
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BciT130I	CCWGG	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	349
BfmI	CTRYAG	2 cut(s)	178, 239
BglII	AGATCT	1 cut(s)	323
BisI	GCNGC	2 cut(s)	18, 84
BlsI	GCNGC	2 cut(s)	19, 85
Bme1390I	CCNGG	2 cut(s)	198, 349
Bme18I	GGWCC	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	447
BmrFI	CCNGG	2 cut(s)	198, 349
BmsI	GCATC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	314
Bpu14I	TTCGAA	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	349
Bsa29I	ATCGAT	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	260
BsaWI	WCCGGW	1 cut(s)	89
Bse118I	RCCGGY	1 cut(s)	206
Bse1I	ACTGG	2 cut(s)	331, 397
BseBI	CCWGG	1 cut(s)	198
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	260
BseGI	GGATG	3 cut(s)	11, 297, 344
BseNI	ACTGG	2 cut(s)	331, 397
BshFI	GGCC	2 cut(s)	83, 96
BshVI	ATCGAT	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	90, 207, 348
BsnI	GGCC	2 cut(s)	83, 96
Bsp119I	TTCGAA	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	48, 323
BspACI	CCGC	3 cut(s)	17, 56, 84
BspANI	GGCC	2 cut(s)	83, 96
BspDI	ATCGAT	1 cut(s)	140
BspT104I	TTCGAA	1 cut(s)	39
BsrBI	CCGCTC	2 cut(s)	17, 58
BsrFI	RCCGGY	1 cut(s)	206
BsrI	ACTGG	2 cut(s)	331, 397
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	260
BssMI	GATC	2 cut(s)	48, 323
BssSI	CACGAG	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	260
Bst2BI	CACGAG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	198
Bst4CI	ACNGT	2 cut(s)	175, 243
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstBI	TTCGAA	1 cut(s)	39
BstF5I	GGATG	3 cut(s)	11, 297, 344
BstKTI	GATC	2 cut(s)	51, 326
BstMBI	GATC	2 cut(s)	48, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	198
BstSCI	CCNGG	2 cut(s)	196, 347
BstSFI	CTRYAG	2 cut(s)	178, 239
BstX2I	RGATCY	1 cut(s)	323
BstYI	RGATCY	1 cut(s)	323
Bsu15I	ATCGAT	1 cut(s)	140
BsuRI	GGCC	2 cut(s)	83, 96
BsuTUI	ATCGAT	1 cut(s)	140
BtsCI	GGATG	3 cut(s)	11, 297, 344
BtsIMutI	CAGTG	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	447
ClaI	ATCGAT	1 cut(s)	140
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	11, 100
CviJI	RGCY	5 cut(s)	83, 96, 108, 238, 359
CviKI_1	RGCY	5 cut(s)	83, 96, 108, 238, 359
CviQI	GTAC	1 cut(s)	352
DpnI	GATC	2 cut(s)	50, 325
DpnII	GATC	2 cut(s)	48, 323
EaeI	YGGCCR	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	260
Eco47I	GGWCC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	447
EcoRI	GAATTC	1 cut(s)	35
EcoRII	CCWGG	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	260
ErhI	CCWWGG	1 cut(s)	260
FaeI	CATG	2 cut(s)	14, 103
FaiI	YATR	6 cut(s)	12, 101, 111, 122, 180, 308
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	2 cut(s)	10, 99
Fnu4HI	GCNGC	2 cut(s)	18, 84
FokI	GGATG	3 cut(s)	18, 304, 331
Fsp4HI	GCNGC	2 cut(s)	18, 84
GluI	GCNGC	2 cut(s)	18, 84
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	2 cut(s)	83, 96
HapII	CCGG	3 cut(s)	90, 207, 348
Hin1II	CATG	2 cut(s)	14, 103
HinfI	GANTC	1 cut(s)	419
HpaII	CCGG	3 cut(s)	90, 207, 348
Hpy188I	TCNGA	4 cut(s)	156, 291, 436, 461
HpyCH4III	ACNGT	2 cut(s)	175, 243
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	216
Hsp92II	CATG	2 cut(s)	14, 103
Kzo9I	GATC	2 cut(s)	48, 323
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	9 cut(s)	103, 111, 183, 210, 220, 293, 344, 361, 410
LweI	GCATC	1 cut(s)	132
MaeIII	GTNAC	3 cut(s)	133, 340, 376
MalI	GATC	2 cut(s)	50, 325
MbiI	CCGCTC	2 cut(s)	17, 58
MboI	GATC	2 cut(s)	48, 323
MboII	GAAGA	2 cut(s)	157, 169
MflI	RGATCY	1 cut(s)	323
MluCI	AATT	3 cut(s)	35, 161, 211
MnlI	CCTC	4 cut(s)	20, 107, 419, 433
MroXI	GAANNNNTTC	2 cut(s)	161, 164
MseI	TTAA	2 cut(s)	77, 366
MspI	CCGG	3 cut(s)	90, 207, 348
MspR9I	CCNGG	2 cut(s)	198, 349
MvaI	CCWGG	1 cut(s)	198
MwoI	GCNNNNNNNGC	1 cut(s)	216
NciI	CCSGG	1 cut(s)	349
NdeII	GATC	2 cut(s)	48, 323
NlaIII	CATG	2 cut(s)	14, 103
NspV	TTCGAA	1 cut(s)	39
PdmI	GAANNNNTTC	2 cut(s)	161, 164
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	19, 85
PpuMI	RGGWCCY	1 cut(s)	447
Psp5II	RGGWCCY	1 cut(s)	447
Psp6I	CCWGG	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	447
PspPPI	RGGWCCY	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	323
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	77, 366
SatI	GCNGC	2 cut(s)	18, 84
Sau3AI	GATC	2 cut(s)	48, 323
Sau96I	GGNCC	1 cut(s)	447
ScrFI	CCNGG	2 cut(s)	198, 349
SetI	ASST	2 cut(s)	361, 449
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	2 cut(s)	178, 239
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	1 cut(s)	447
Sse9I	AATT	3 cut(s)	35, 161, 211
SsiI	CCGC	3 cut(s)	17, 56, 84
StyD4I	CCNGG	2 cut(s)	196, 347
StyI	CCWWGG	1 cut(s)	260
TaaI	ACNGT	2 cut(s)	175, 243
TaqI	TCGA	3 cut(s)	39, 140, 312
TasI	AATT	3 cut(s)	35, 161, 211
TauI	GCSGC	2 cut(s)	20, 86
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	2 cut(s)	77, 366
Tru9I	TTAA	2 cut(s)	77, 366
TscAI	CASTG	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	308, 420, 445
TspRI	CASTG	1 cut(s)	404
VpaK11BI	GGWCC	1 cut(s)	447
XapI	RAATTY	2 cut(s)	35, 161
XmnI	GAANNNNTTC	2 cut(s)	161, 164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.