Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0022213

Physical Location & Seq

Genomic Coordinates Forward (+)

11898665 .. 11899130

Gene Structure 466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g15970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCGGTGGTGGATTTGGAGCCTCATCAGGAGGCGGAGACTTTGAAGCGAAGATCACGCCCCTTGTGATCATTTCGTGCATAATGGCTGCTAGCGGAGGCCTCATGTTCGGTTATGATGTTGGCATTTCAGGGGGTGTTACATCCATGCCCCATTTCCAAAAGAAATTCTTCCCGGTTGTGTATAGGAAGACTCAAGAATCTGGACCAGAGAGCAACTACTGCAAATATGATAATCAAGGCTTGCAGTTGTTCACATCTTCATTGTACCTGGCTGCTTTAATATCAACCTTTTTTGCGTCGTACACTACCAGATCGATCATCTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005356 GO:0005358 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009414 GO:0009415 GO:0009506 GO:0009628 GO:0009651 GO:0009679 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0030054 GO:0033993 GO:0034219 GO:0034220 GO:0042221 GO:0044464 GO:0046323 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944 GO:0097305 GO:0098655 GO:0098660 GO:0098662 GO:1901700 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

110

Amino Acids

11.61

Weight (kDa)

7.75

Isoelectric Point (pI)

41.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	27 - 104	2.3e-09	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022213)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g15486
malus_domestica	MD05G1077000.v1.1 MD16G1190500.v1.1
pyrus_communis	pycom16g15970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 96
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	2 cut(s)	269, 305
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	270
Alw26I	GTCTC	1 cut(s)	33
AoxI	GGCC	2 cut(s)	3, 100
ApeKI	GCWGC	2 cut(s)	89, 275
ApoI	RAATTY	1 cut(s)	167
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	206
AsuC2I	CCSGG	1 cut(s)	176
AsuNHI	GCTAGC	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	76, 262
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	176
BcoDI	GTCTC	1 cut(s)	33
BfaI	CTAG	2 cut(s)	93, 328
BisI	GCNGC	2 cut(s)	90, 276
BlsI	GCNGC	2 cut(s)	91, 277
Bme1390I	CCNGG	2 cut(s)	176, 272
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	176, 272
BmtI	GCTAGC	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	180
BpuMI	CCSGG	1 cut(s)	176
Bsa29I	ATCGAT	1 cut(s)	317
Bse118I	RCCGGY	1 cut(s)	5
BseBI	CCWGG	1 cut(s)	272
BseCI	ATCGAT	1 cut(s)	317
BseGI	GGATG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	76, 262
BshFI	GGCC	2 cut(s)	5, 102
BshVI	ATCGAT	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	6, 176
BsmAI	GTCTC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	5, 102
Bsp143I	GATC	4 cut(s)	54, 69, 314, 318
BspACI	CCGC	2 cut(s)	36, 96
BspANI	GGCC	2 cut(s)	5, 102
BspDI	ATCGAT	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	22
BspOI	GCTAGC	1 cut(s)	96
BsrFI	RCCGGY	1 cut(s)	5
BssAI	RCCGGY	1 cut(s)	5
BssMI	GATC	4 cut(s)	54, 69, 314, 318
Bst2UI	CCWGG	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	222
BstC8I	GCNNGC	2 cut(s)	94, 245
BstF5I	GGATG	1 cut(s)	143
BstKTI	GATC	4 cut(s)	57, 72, 317, 321
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	4 cut(s)	54, 69, 314, 318
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	2 cut(s)	174, 270
BstV1I	GCAGC	2 cut(s)	76, 262
BstV2I	GAAGAC	1 cut(s)	197
Bsu15I	ATCGAT	1 cut(s)	317
BsuRI	GGCC	2 cut(s)	5, 102
BsuTUI	ATCGAT	1 cut(s)	317
BtsCI	GGATG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	94, 245
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	317
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	268, 304
CviAII	CATG	2 cut(s)	106, 148
CviJI	RGCY	6 cut(s)	5, 23, 89, 102, 243, 275
CviKI_1	RGCY	6 cut(s)	5, 23, 89, 102, 243, 275
CviQI	GTAC	2 cut(s)	268, 304
DpnI	GATC	4 cut(s)	56, 71, 316, 320
DpnII	GATC	4 cut(s)	54, 69, 314, 318
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	51
Eco147I	AGGCCT	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	270
FaeI	CATG	2 cut(s)	109, 151
FaiI	YATR	6 cut(s)	83, 107, 117, 149, 186, 231
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	2 cut(s)	105, 147
FbaI	TGATCA	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	90, 276
FokI	GGATG	1 cut(s)	130
Fsp4HI	GCNGC	2 cut(s)	90, 276
FspBI	CTAG	2 cut(s)	93, 328
GluI	GCNGC	2 cut(s)	90, 276
HaeIII	GGCC	2 cut(s)	5, 102
HapII	CCGG	2 cut(s)	6, 176
HgaI	GACGC	1 cut(s)	288
Hin1II	CATG	2 cut(s)	109, 151
HinfI	GANTC	2 cut(s)	193, 200
HpaII	CCGG	2 cut(s)	6, 176
Hpy166II	GTNNAC	2 cut(s)	255, 306
Hpy188III	TCNNGA	3 cut(s)	30, 197, 204
Hpy8I	GTNNAC	2 cut(s)	255, 306
Hpy99I	CGWCG	1 cut(s)	304
HpyCH4V	TGCA	3 cut(s)	81, 225, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
Hsp92II	CATG	2 cut(s)	109, 151
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	54, 69, 314, 318
LmnI	GCTCC	1 cut(s)	20
LpnPI	CCDG	9 cut(s)	15, 19, 117, 189, 189, 222, 257, 284, 325
Lsp1109I	GCAGC	2 cut(s)	76, 262
MaeI	CTAG	2 cut(s)	93, 328
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	4 cut(s)	56, 71, 316, 320
MboI	GATC	4 cut(s)	54, 69, 314, 318
MboII	GAAGA	5 cut(s)	64, 163, 202, 252, 316
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	187
MnlI	CCTC	4 cut(s)	26, 34, 92, 113
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	1 cut(s)	281
MspI	CCGG	2 cut(s)	6, 176
MspR9I	CCNGG	2 cut(s)	176, 272
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	222
NciI	CCSGG	1 cut(s)	176
NdeII	GATC	4 cut(s)	54, 69, 314, 318
NheI	GCTAGC	1 cut(s)	92
NlaIII	CATG	2 cut(s)	109, 151
NlaIV	GGNNCC	1 cut(s)	22
PceI	AGGCCT	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	91, 277
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	270
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	269, 305
RsaNI	GTAC	2 cut(s)	268, 304
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	90, 276
Sau3AI	GATC	4 cut(s)	54, 69, 314, 318
Sau96I	GGNCC	1 cut(s)	206
SchI	GAGTC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	176, 272
SetI	ASST	2 cut(s)	273, 293
SinI	GGWCC	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	1 cut(s)	167
SseBI	AGGCCT	1 cut(s)	102
SsiI	CCGC	2 cut(s)	36, 96
SspMI	CTAG	2 cut(s)	93, 328
StuI	AGGCCT	1 cut(s)	102
StyD4I	CCNGG	2 cut(s)	174, 270
TaqI	TCGA	1 cut(s)	317
TasI	AATT	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	2 cut(s)	89, 275
TspDTI	ATGAA	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	206
XapI	RAATTY	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	170
XspI	CTAG	2 cut(s)	93, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.