FvH4_4g19283

ZINC FINGER protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018024
Physical Location & Seq
Forward (+)
22986742 .. 22987541
800 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19283.t1

Sequence Viewer

Length: 474 bp
ATGAGTGCATCGGTTGCTGATCAGAACACCAAACCTTCATCATCAGCAATCAAGCTATTCGGGTTTTCGCTCATGGCCGATCCCTGTGAAGACGGAGTGGTGACAACGAAGAGCAAGAAGCAGTTTGTGTGTCACTACTGCGGTCGAGAGTTTGAGAATTCTCAAGCATTAGGTGGCCATCAAAATGCACACAAAAGAGAAAGGAAGCTAGCAAGAATGGCCATGTTGGAGCACGAGGAGGATCATCAGTATCAGGAATGCCAACACTTTCTTCCTCCTCAACGTAGTCAAGTACTGTTTCCAACCGGTGTCCGGTACCCCAGTATAAACCCTATGTTCGACACGAAATCTGGCGAGTCCGCAACCCAGAATTATATCGGCGGTGGTGCTGGTGCTGGTGCAGATCGGGTACTGCTCCCTAACGATTATGAGGGAAATGATCAGGTCGACATTGATCTACGTTTGAGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C2H2_6

Protein Analysis

158

Amino Acids

17.46

Weight (kDa)

6.05

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 42 - 66 6.5e-06 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018024)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g19283
rosa_chinensis RchiOBHm_Chr4g0424291
rosa_laevigata RLG00000007489
rosa_multiflora Rmu_sc0002260.1_g000016
rosa_roxburghii Rroxscaffold_5G00366240
rosa_rugosa Rorug04G0195600
rosa_samantha Rh4AG252400 Rh4BG257900 Rh4CG268500 Rh4DG252200
rosa_wichuraiana Rw4G021770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 315
AccB1I GGYRCC 1 cut(s) 315
AccI GTMKAC 1 cut(s) 447
AciI CCGC 3 cut(s) 141, 360, 381
AclWI GGATC 2 cut(s) 74, 249
AcoI YGGCCR 3 cut(s) 75, 175, 219
AcsI RAATTY 1 cut(s) 157
AfaI GTAC 3 cut(s) 294, 317, 411
AfiI CCNNNNNNNGG 1 cut(s) 312
AgeI ACCGGT 1 cut(s) 305
AjuI GAANNNNNNNTTGG 2 cut(s) 255, 287
AluBI AGCT 2 cut(s) 55, 208
AluI AGCT 2 cut(s) 55, 208
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 460
AlwI GGATC 2 cut(s) 74, 249
AoxI GGCC 3 cut(s) 75, 175, 219
ApoI RAATTY 1 cut(s) 157
AsiGI ACCGGT 1 cut(s) 305
Asp718I GGTACC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 112
AsuNHI GCTAGC 1 cut(s) 208
BaeI ACNNNNGTAYC 2 cut(s) 307, 340
BalI TGGCCA 2 cut(s) 177, 221
BanI GGYRCC 1 cut(s) 315
BauI CACGAG 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 1 cut(s) 186
BclI TGATCA 2 cut(s) 19, 439
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 1 cut(s) 209
BmcAI AGTACT 1 cut(s) 294
BmiI GGNNCC 1 cut(s) 317
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 17
BmtI GCTAGC 1 cut(s) 212
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 147
BsaWI WCCGGW 2 cut(s) 305, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 312
Bse118I RCCGGY 1 cut(s) 305
Bse1I ACTGG 1 cut(s) 321
BseLI CCNNNNNNNGG 1 cut(s) 312
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 2 cut(s) 251, 267
BsgI GTGCAG 1 cut(s) 420
Bsh1285I CGRYCG 1 cut(s) 145
BshFI GGCC 3 cut(s) 77, 177, 221
BshNI GGYRCC 1 cut(s) 315
BshTI ACCGGT 1 cut(s) 305
BsiEI CGRYCG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 2 cut(s) 306, 313
BslI CCNNNNNNNGG 1 cut(s) 312
BsmAI GTCTC 1 cut(s) 460
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 3 cut(s) 77, 177, 221
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 6 cut(s) 19, 79, 241, 403, 439, 454
BspACI CCGC 3 cut(s) 141, 360, 381
BspANI GGCC 3 cut(s) 77, 177, 221
BspLI GGNNCC 1 cut(s) 317
BspOI GCTAGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 74, 249
BspQI GCTCTTC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 305
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 1 cut(s) 305
BssMI GATC 6 cut(s) 19, 79, 241, 403, 439, 454
BssSI CACGAG 1 cut(s) 233
Bst2BI CACGAG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 297
Bst6I CTCTTC 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 210
BstKTI GATC 6 cut(s) 22, 82, 244, 406, 442, 457
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 6 cut(s) 19, 79, 241, 403, 439, 454
BstMCI CGRYCG 1 cut(s) 145
BstMWI GCNNNNNNNGC 2 cut(s) 14, 218
BstV2I GAAGAC 1 cut(s) 96
BsuRI GGCC 3 cut(s) 77, 177, 221
Cac8I GCNNGC 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 305
Csp6I GTAC 3 cut(s) 293, 316, 410
CspAI ACCGGT 1 cut(s) 305
CviAII CATG 2 cut(s) 73, 223
CviJI RGCY 5 cut(s) 55, 77, 177, 208, 221
CviKI_1 RGCY 5 cut(s) 55, 77, 177, 208, 221
CviQI GTAC 3 cut(s) 293, 316, 410
DpnI GATC 6 cut(s) 21, 81, 243, 405, 441, 456
DpnII GATC 6 cut(s) 19, 79, 241, 403, 439, 454
EaeI YGGCCR 3 cut(s) 75, 175, 219
Eam1104I CTCTTC 1 cut(s) 104
EarI CTCTTC 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 157
FaeI CATG 2 cut(s) 76, 226
FaiI YATR 6 cut(s) 74, 224, 326, 335, 375, 429
FatI CATG 2 cut(s) 72, 222
FbaI TGATCA 2 cut(s) 19, 439
FblI GTMKAC 1 cut(s) 447
FspBI CTAG 1 cut(s) 209
HaeIII GGCC 3 cut(s) 77, 177, 221
HapII CCGG 2 cut(s) 306, 313
Hin1II CATG 2 cut(s) 76, 226
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
HinfI GANTC 1 cut(s) 356
HpaII CCGG 2 cut(s) 306, 313
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 1 cut(s) 24
Hpy188III TCNNGA 2 cut(s) 146, 254
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 297
HpyCH4IV ACGT 2 cut(s) 283, 460
HpyCH4V TGCA 3 cut(s) 8, 188, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 218
HpySE526I ACGT 2 cut(s) 283, 460
Hsp92II CATG 2 cut(s) 76, 226
KpnI GGTACC 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 19, 439
Kzo9I GATC 6 cut(s) 19, 79, 241, 403, 439, 454
LguI GCTCTTC 1 cut(s) 104
LmnI GCTCC 2 cut(s) 229, 420
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 209
MaeII ACGT 2 cut(s) 283, 460
MaeIII GTNAC 2 cut(s) 100, 131
MalI GATC 6 cut(s) 21, 81, 243, 405, 441, 456
MboI GATC 6 cut(s) 19, 79, 241, 403, 439, 454
MboII GAAGA 3 cut(s) 101, 121, 263
MhlI GDGCHC 1 cut(s) 234
MlsI TGGCCA 2 cut(s) 177, 221
MluCI AATT 2 cut(s) 157, 370
MluNI TGGCCA 2 cut(s) 177, 221
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 2 cut(s) 207, 326
MnlI CCTC 5 cut(s) 229, 232, 285, 288, 424
Mox20I TGGCCA 2 cut(s) 177, 221
MscI TGGCCA 2 cut(s) 177, 221
MseI TTAA 1 cut(s) 472
MslI CAYNNNNRTG 1 cut(s) 183
Msp20I TGGCCA 2 cut(s) 177, 221
MspI CCGG 2 cut(s) 306, 313
Mva1269I GAATGC 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 14, 218
NdeII GATC 6 cut(s) 19, 79, 241, 403, 439, 454
NheI GCTAGC 1 cut(s) 208
NlaIII CATG 2 cut(s) 76, 226
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 100, 131
PciSI GCTCTTC 1 cut(s) 104
PctI GAATGC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 305
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspN4I GGNNCC 1 cut(s) 317
RsaI GTAC 3 cut(s) 294, 317, 411
RsaNI GTAC 3 cut(s) 293, 316, 410
RseI CAYNNNNRTG 1 cut(s) 183
SalI GTCGAC 1 cut(s) 446
SapI GCTCTTC 1 cut(s) 104
SaqAI TTAA 1 cut(s) 472
Sau3AI GATC 6 cut(s) 19, 79, 241, 403, 439, 454
ScaI AGTACT 1 cut(s) 294
SchI GAGTC 1 cut(s) 365
SduI GDGCHC 1 cut(s) 234
SetI ASST 7 cut(s) 37, 57, 175, 210, 286, 447, 463
SfaNI GCATC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 2 cut(s) 157, 370
SsiI CCGC 3 cut(s) 141, 360, 381
SspMI CTAG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 297
TaiI ACGT 2 cut(s) 286, 463
TaqI TCGA 3 cut(s) 145, 339, 447
TasI AATT 2 cut(s) 157, 370
TatI WGTACW 1 cut(s) 292
Tru1I TTAA 1 cut(s) 472
Tru9I TTAA 1 cut(s) 472
TseFI GTSAC 2 cut(s) 100, 131
Tsp45I GTSAC 2 cut(s) 100, 131
TspDTI ATGAA 1 cut(s) 27
TspGWI ACGGA 1 cut(s) 108
XapI RAATTY 1 cut(s) 157
XmiI GTMKAC 1 cut(s) 447
XspI CTAG 1 cut(s) 209
ZrmI AGTACT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.