FvH4_4g28851

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0019228
Physical Location & Seq
Forward (+)
29317259 .. 29317964
706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g28851.t1

Sequence Viewer

Length: 525 bp
ATGGCTTCCCTAACCTCTCTTATTATTCAAACTAGGAGCTACAGCTGCTGGGTAGATCAGAATCAGTGGAAGCCTCAAAGATCAAATTACTTGCCAGTTTTTATTACTGATTGTCATATCGAGTTAAACAGTTACCAACCAAAGACTCCACTCAAATTGGGCAAGACAATCATCAGTCTCACATTCCAAGCCATTGTCAGCTGCGCTCTTGCTTTTCAAAACAGCACTTCATCATACATTTCACCGGCTTGGCAGATTGTTGGAGTAGCCATGGCGATTGCTTTTGCAGGTTGTTTCTCTGGAATTTTCCTGAGTCATTCTTACCCAAATGCAGCAACTATCATAGAGAAAATCGGGTGTGCTTCTGCTGCAATCGGATTTTTCCTAATGACGAGTAATTTTCTCCCTAGCAACATCTCATGGATTTGCTGGTTGGCCTTTTCCATTTCCTTGCTAGCCTTCTACCGTAGCCTTCAGCCTGTCTTAGCCGGTCCCAAGCCCGGAGAAAAGGAGGAGGGAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.1

Weight (kDa)

8.22

Isoelectric Point (pI)

49.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019228)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g28851
rosa_chinensis RchiOBHm_Chr4g0436961
rosa_laevigata RLG00000006480
rosa_rugosa Rorug04G0297700
rosa_samantha Rh4AG352000 Rh4BG361100 Rh4CG375400 Rh4DG355200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 278
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 500
AgsI TTSAA 2 cut(s) 29, 218
AluBI AGCT 3 cut(s) 39, 45, 201
AluI AGCT 3 cut(s) 39, 45, 201
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 48
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 4 cut(s) 45, 201, 332, 368
ApoI RAATTY 1 cut(s) 303
AspLEI GCGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 491
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 1 cut(s) 234
AsuNHI GCTAGC 1 cut(s) 454
AvaII GGWCC 1 cut(s) 491
BbvI GCAGC 4 cut(s) 32, 188, 344, 355
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 3 cut(s) 33, 408, 455
BfmI CTRYAG 1 cut(s) 40
BfuAI ACCTGC 1 cut(s) 278
BisI GCNGC 4 cut(s) 46, 202, 333, 369
BlsI GCNGC 4 cut(s) 47, 203, 334, 370
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 491
BmgT120I GGNCC 1 cut(s) 491
BmiI GGNNCC 1 cut(s) 493
BmrFI CCNGG 1 cut(s) 501
BmtI GCTAGC 1 cut(s) 458
BpuMI CCSGG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse118I RCCGGY 2 cut(s) 244, 488
Bse1I ACTGG 1 cut(s) 95
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 270
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 500
BseMII CTCAG 1 cut(s) 302
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 4 cut(s) 32, 188, 344, 355
BseYI CCCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 437
BsiSI CCGG 3 cut(s) 245, 489, 501
BslFI GGGAC 1 cut(s) 477
BslI CCNNNNNNNGG 1 cut(s) 500
BsmAI GTCTC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 477
BsnI GGCC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 55, 80
Bsp19I CCATGG 1 cut(s) 270
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 1 cut(s) 303
BspLI GGNNCC 1 cut(s) 493
BspMI ACCTGC 1 cut(s) 278
BspOI GCTAGC 1 cut(s) 458
BsrFI RCCGGY 2 cut(s) 244, 488
BsrI ACTGG 1 cut(s) 95
BssAI RCCGGY 2 cut(s) 244, 488
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 55, 80
BssT1I CCWWGG 1 cut(s) 270
Bst4CI ACNGT 2 cut(s) 131, 467
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 2 cut(s) 311, 484
BstDSI CCRYGG 1 cut(s) 270
BstHHI GCGC 1 cut(s) 206
BstKTI GATC 2 cut(s) 58, 83
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 55, 80
BstMWI GCNNNNNNNGC 2 cut(s) 45, 368
BstSCI CCNGG 1 cut(s) 499
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 4 cut(s) 32, 188, 344, 355
BsuRI GGCC 1 cut(s) 437
BtgI CCRYGG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 71
BveI ACCTGC 1 cut(s) 278
Cac8I GCNNGC 1 cut(s) 456
CaiI CAGNNNCTG 1 cut(s) 48
CfoI GCGC 1 cut(s) 206
Cfr10I RCCGGY 2 cut(s) 244, 488
Cfr13I GGNCC 1 cut(s) 491
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 2 cut(s) 271, 420
DdeI CTNAG 2 cut(s) 311, 484
DpnI GATC 2 cut(s) 57, 82
DpnII GATC 2 cut(s) 55, 80
Eco130I CCWWGG 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 458
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 2 cut(s) 274, 423
FaiI YATR 5 cut(s) 117, 235, 272, 344, 421
FaqI GGGAC 1 cut(s) 477
FatI CATG 2 cut(s) 270, 419
Fnu4HI GCNGC 4 cut(s) 46, 202, 333, 369
Fsp4HI GCNGC 4 cut(s) 46, 202, 333, 369
FspBI CTAG 3 cut(s) 33, 408, 455
GlaI GCGC 1 cut(s) 205
GluI GCNGC 4 cut(s) 46, 202, 333, 369
GsaI CCCAGC 1 cut(s) 52
HaeIII GGCC 1 cut(s) 437
HapII CCGG 3 cut(s) 245, 489, 501
HhaI GCGC 1 cut(s) 206
Hin1II CATG 2 cut(s) 274, 423
Hin6I GCGC 1 cut(s) 204
HinP1I GCGC 1 cut(s) 204
HinfI GANTC 3 cut(s) 61, 145, 313
HpaII CCGG 3 cut(s) 245, 489, 501
HphI GGTGA 1 cut(s) 234
Hpy188I TCNGA 2 cut(s) 60, 377
Hpy188III TCNNGA 2 cut(s) 300, 310
HpyAV CCTTC 2 cut(s) 469, 482
HpyCH4III ACNGT 2 cut(s) 131, 467
HpyCH4V TGCA 3 cut(s) 287, 332, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 368
HpyF3I CTNAG 2 cut(s) 311, 484
Hsp92II CATG 2 cut(s) 274, 423
HspAI GCGC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 55, 80
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 4 cut(s) 32, 188, 344, 355
MaeI CTAG 3 cut(s) 33, 408, 455
MaeIII GTNAC 1 cut(s) 131
MalI GATC 2 cut(s) 57, 82
MboI GATC 2 cut(s) 55, 80
MluCI AATT 4 cut(s) 85, 155, 303, 397
MlyI GAGTC 2 cut(s) 139, 322
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 4 cut(s) 25, 84, 505, 508
MseI TTAA 1 cut(s) 125
MspA1I CMGCKG 2 cut(s) 45, 201
MspI CCGG 3 cut(s) 245, 489, 501
MspR9I CCNGG 1 cut(s) 501
MwoI GCNNNNNNNGC 2 cut(s) 45, 368
NciI CCSGG 1 cut(s) 501
NcoI CCATGG 1 cut(s) 270
NdeII GATC 2 cut(s) 55, 80
NheI GCTAGC 1 cut(s) 454
NlaIII CATG 2 cut(s) 274, 423
NlaIV GGNNCC 1 cut(s) 493
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 4 cut(s) 47, 203, 334, 370
PleI GAGTC 2 cut(s) 139, 321
PpsI GAGTC 2 cut(s) 139, 321
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 493
PspPI GGNCC 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 48
PvuII CAGCTG 2 cut(s) 45, 201
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 4 cut(s) 46, 202, 333, 369
Sau3AI GATC 2 cut(s) 55, 80
Sau96I GGNCC 1 cut(s) 491
SchI GAGTC 2 cut(s) 139, 322
ScrFI CCNGG 1 cut(s) 501
SetI ASST 5 cut(s) 17, 41, 47, 203, 292
SfcI CTRYAG 1 cut(s) 40
SinI GGWCC 1 cut(s) 491
Sse9I AATT 4 cut(s) 85, 155, 303, 397
SspMI CTAG 3 cut(s) 33, 408, 455
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 2 cut(s) 131, 467
TaqI TCGA 1 cut(s) 120
TasI AATT 4 cut(s) 85, 155, 303, 397
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TscAI CASTG 1 cut(s) 71
TseI GCWGC 4 cut(s) 45, 201, 332, 368
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 491
XapI RAATTY 1 cut(s) 303
XspI CTAG 3 cut(s) 33, 408, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.