Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0019228

Physical Location & Seq

Genomic Coordinates Forward (+)

62939058 .. 62941491

Gene Structure 2434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG375400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAGCTTCGGGTTTCCAACACTAACGTTGGTTGCTTCATTATAAAGTCACAGACATTTGGAGTGCGATTAGGGAACACTACATCATCCATGGCTTCTCTAACCTCGCTTATTATTCAAACTAGGAGTTGCAGCTGCTGGGTAGCTCAGAGTCAGTGGAAGCCAAAAGCATCAGATTACTTGCCAGTTTCTATTACTAATTGTCATATTGAGTTGCACAGTAACCAACAAAAGACTCCACTAAGTTTGGGGAAGACAATCCTCAGTCTCACATTTCAAGCCATTGTCAGCTGCGCTCTTGCTTTTCAAACCAACACGTCATCACACATTTCACCGGCTTGGCACATTGTTGGGGCGGCCATGGCGATTGCTTTCGCAGCTTGTTTCTCTGGAATTTTCTTAAGGCATTCCTACCCAAATGCTGCAACTATCATAGAGAAAACTGGGTGTGCTTCAGCCGCAATCGCGTTTTTCCTAATGACGAGTATTTTTCTCCCTAGCAATATCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

170

Amino Acids

18.28

Weight (kDa)

9.43

Isoelectric Point (pI)

54.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019228)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28851
rosa_chinensis	RchiOBHm_Chr4g0436961
rosa_laevigata	RLG00000006480
rosa_rugosa	Rorug04G0297700
rosa_samantha	Rh4AG352000 Rh4BG361100 Rh4CG375400 Rh4DG355200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	44
AccII	CGCG	1 cut(s)	467
AciI	CCGC	2 cut(s)	356, 459
AclI	AACGTT	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	1 cut(s)	393
AcuI	CTGAAG	1 cut(s)	438
AflII	CTTAAG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	119, 278, 308
AjiI	CACGTC	1 cut(s)	318
AluBI	AGCT	5 cut(s)	7, 135, 146, 291, 380
AluI	AGCT	5 cut(s)	7, 135, 146, 291, 380
Alw26I	GTCTC	1 cut(s)	272
AlwNI	CAGNNNCTG	1 cut(s)	138
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	5 cut(s)	132, 135, 291, 377, 422
ApoI	RAATTY	1 cut(s)	393
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	5 cut(s)	122, 144, 278, 389, 409
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	123, 498
BfrI	CTTAAG	1 cut(s)	400
BisI	GCNGC	7 cut(s)	133, 136, 292, 357, 378, 423, 459
BlsI	GCNGC	7 cut(s)	134, 137, 293, 358, 379, 424, 460
BmgBI	CACGTC	1 cut(s)	318
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	453
BpiI	GAAGAC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	90, 360
Bse118I	RCCGGY	1 cut(s)	334
Bse1I	ACTGG	2 cut(s)	185, 448
BseDI	CCNNGG	2 cut(s)	90, 360
BseGI	GGATG	1 cut(s)	86
BseMII	CTCAG	2 cut(s)	161, 277
BseNI	ACTGG	2 cut(s)	185, 448
BseXI	GCAGC	5 cut(s)	122, 144, 278, 389, 409
BseYI	CCCAGC	1 cut(s)	138
Bsh1236I	CGCG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	335
BsmAI	GTCTC	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	359
Bsp19I	CCATGG	2 cut(s)	90, 360
BspACI	CCGC	2 cut(s)	356, 459
BspANI	GGCC	1 cut(s)	359
BspCNI	CTCAG	2 cut(s)	160, 276
BspFNI	CGCG	1 cut(s)	467
BspHI	TCATGA	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	400
BsrFI	RCCGGY	1 cut(s)	334
BsrI	ACTGG	2 cut(s)	185, 448
BssAI	RCCGGY	1 cut(s)	334
BssECI	CCNNGG	2 cut(s)	90, 360
BssT1I	CCWWGG	2 cut(s)	90, 360
Bst4CI	ACNGT	1 cut(s)	221
BstAFI	CTTAAG	1 cut(s)	400
BstDEI	CTNAG	3 cut(s)	147, 242, 263
BstDSI	CCRYGG	2 cut(s)	90, 360
BstF5I	GGATG	1 cut(s)	86
BstFNI	CGCG	1 cut(s)	467
BstHHI	GCGC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	272
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 377, 458, 464
BstUI	CGCG	1 cut(s)	467
BstV1I	GCAGC	5 cut(s)	122, 144, 278, 389, 409
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	359
BtgI	CCRYGG	2 cut(s)	90, 360
BtrI	CACGTC	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	86
BtsIMutI	CAGTG	1 cut(s)	161
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	509
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	334
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	3 cut(s)	91, 361, 510
DdeI	CTNAG	3 cut(s)	147, 242, 263
EaeI	YGGCCR	1 cut(s)	357
Eco130I	CCWWGG	2 cut(s)	90, 360
Eco57I	CTGAAG	1 cut(s)	438
EcoT14I	CCWWGG	2 cut(s)	90, 360
ErhI	CCWWGG	2 cut(s)	90, 360
FaeI	CATG	3 cut(s)	94, 364, 513
FaiI	YATR	6 cut(s)	44, 92, 207, 362, 434, 511
FatI	CATG	3 cut(s)	90, 360, 509
Fnu4HI	GCNGC	7 cut(s)	133, 136, 292, 357, 378, 423, 459
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	7 cut(s)	133, 136, 292, 357, 378, 423, 459
FspBI	CTAG	2 cut(s)	123, 498
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	7 cut(s)	133, 136, 292, 357, 378, 423, 459
GsaI	CCCAGC	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	1 cut(s)	335
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	94, 364, 513
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	2 cut(s)	151, 235
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	324
Hpy188I	TCNGA	2 cut(s)	150, 175
Hpy188III	TCNNGA	2 cut(s)	390, 510
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	2 cut(s)	27, 317
HpyCH4V	TGCA	3 cut(s)	132, 217, 425
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 377, 458, 464
HpyF3I	CTNAG	3 cut(s)	147, 242, 263
HpySE526I	ACGT	2 cut(s)	27, 317
Hsp92II	CATG	3 cut(s)	94, 364, 513
HspAI	GCGC	1 cut(s)	294
LpnPI	CCDG	5 cut(s)	124, 198, 348, 375, 429
Lsp1109I	GCAGC	5 cut(s)	122, 144, 278, 389, 409
LweI	GCATC	1 cut(s)	179
MaeI	CTAG	2 cut(s)	123, 498
MaeII	ACGT	2 cut(s)	27, 317
MaeIII	GTNAC	2 cut(s)	48, 221
MboII	GAAGA	1 cut(s)	265
MluCI	AATT	2 cut(s)	199, 393
MlyI	GAGTC	2 cut(s)	160, 229
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	115, 272
MseI	TTAA	1 cut(s)	401
MspA1I	CMGCKG	2 cut(s)	135, 291
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	467
MwoI	GCNNNNNNNGC	4 cut(s)	362, 377, 458, 464
NcoI	CCATGG	2 cut(s)	90, 360
NlaIII	CATG	3 cut(s)	94, 364, 513
NmuCI	GTSAC	1 cut(s)	48
PagI	TCATGA	1 cut(s)	509
PctI	GAATGC	1 cut(s)	406
PkrI	GCNGC	7 cut(s)	134, 137, 293, 358, 379, 424, 460
PleI	GAGTC	2 cut(s)	159, 229
PpsI	GAGTC	2 cut(s)	159, 229
PsiI	TTATAA	1 cut(s)	44
Psp1406I	AACGTT	1 cut(s)	27
PspFI	CCCAGC	1 cut(s)	138
PstNI	CAGNNNCTG	1 cut(s)	138
PvuII	CAGCTG	2 cut(s)	135, 291
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	7 cut(s)	133, 136, 292, 357, 378, 423, 459
SchI	GAGTC	2 cut(s)	160, 229
SetI	ASST	8 cut(s)	9, 30, 107, 137, 148, 293, 320, 382
SfaNI	GCATC	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	2 cut(s)	199, 393
SsiI	CCGC	2 cut(s)	356, 459
SspMI	CTAG	2 cut(s)	123, 498
StyI	CCWWGG	2 cut(s)	90, 360
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	2 cut(s)	30, 320
TasI	AATT	2 cut(s)	199, 393
TauI	GCSGC	2 cut(s)	359, 461
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TscAI	CASTG	1 cut(s)	161
TseFI	GTSAC	1 cut(s)	48
TseI	GCWGC	5 cut(s)	132, 135, 291, 377, 422
Tsp45I	GTSAC	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	17, 28
TspRI	CASTG	1 cut(s)	161
Vha464I	CTTAAG	1 cut(s)	400
XapI	RAATTY	1 cut(s)	393
XspI	CTAG	2 cut(s)	123, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.