FvH4_4g33140

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0018031
Physical Location & Seq
Reverse (-)
31460728 .. 31462197
1470 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g33140.t1

Sequence Viewer

Length: 1470 bp
ATGGAGTCATCTATCCCTCAACAACACCACGCCTACGTCTCCGAGCTCCTCTCCTTCCCCCTCGCTCGCCTCCACAAGGAACCGGAGCTTCTCCGGCTCGACAGGGATCGAATCCAAAGCCAACTCCAAGACTTCATGGCCGGTAACTACCGAGCATTGGTTTATTCTGCGCATACCTCTCTCTCAGTTCAAGACCAACTATCCTCCATTGACAAGGATCTTAAATCTCTTACATTGGAGAAGATCCCCACGTTAACAAATGCATGCACCAAGTTCGTTGACACTTTGGAAAAGATGAACAAGATGAACCAAACACAGCACTTACTTGAAATCCCTCAACTCATGGGAGCATGTGTGAAAGATGAGAACTATGATGAAGCTCTAGAGTTAGAAGCCTTTGTTCGCAAGCTTTCGACTATGCACCCCAAATCAGTACTTGTTAGGGACCTGGCTGAACATGTCAGGAAGATCACTCAATCCCTTGTCTCCCAGCTTCTTCAAAAACTTCGTTTGGATTTTGAAAAACCCGAGCCTGAACATTGCCTTCGGATTGTTGGATATTTACGTAGAACAGGAGTGTATAGTGAGTATGAACTACGGTTGCAGTTTTTGAAATGTAGGCAGGCATGGCTTACAGGAATGTTGGAGGATTTGGATGAGGGAAACCCTGACGAGTACCTCAAGGGGATGATTGGTTGTCACAGAAAGCATCTAGTTGATATTGTTAATCAATATGTGTTGGTAAATTACGATGAGAATGATGGTGGTCTTCTCAATAGTTGGCTTATGCATCAAGTAACCTCACACCTTGAGACTCTCAAAATTTTACTCCCAGAAATAAGTGACGGGGTGTTGCTATCTAATATTCTTGAGGAATCCATGTATTGCTGCATGGTGCTTGGAAGGGTGATTGGGCTAGATTTCAGGGCGATGCTAATTCCAATTTTTGAAGAGGCAGTTGTCAACATGTTCTCAAACAATGTGAGTAGAGCAGTTGAAGGATTTCAGTTGGTTTTGGATTCACATCGTTGGGTTCCAGCACCAGCTATAGCAAATAGTAGTGTTCATGGTGGTGGTGGTGATGATGATGATGATGTAATTGAACCGCCGTATTGTCTTATGGAGCATCCACCTCTGGCTGTTTTTGTTAATGGAGTGGCTGCGGCGATGAATGAGCTCCGGCCCTGTGCACCCTTGAGCTTGAAGCATGTGCTTGCTAAAGAATTGATCAAGGGATTGAAGGCTGTTTCCGACTATTTGATGACTTATAATGCAGAGACTGGGATATTACTTGGAGAAAATAAGGAGTCTGAACTTTTTCTCTCACTTTGTCAAGCCTTCATTGAGATTACTTACCCACATTGTGCAAAGTGCTTTGGCCGCTGTTATACTGGCGGAGCTGCTTCAGTCATGGATGCAAAGAGTTCATGTGACGGCATTCGCCGCCTAGTGAAGACAGTCTCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

490

Amino Acids

55.07

Weight (kDa)

5.48

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 13 - 333 2.8e-84 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018031)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33140
rosa_chinensis RchiOBHm_Chr4g0442191
rosa_laevigata RLG00000006025 RLG00000006028 RLG00000006031
rosa_multiflora Rmu_sc0010284.1_g000005
rosa_roxburghii Rroxscaffold_5G00383110
rosa_rugosa Rorug04G0339400
rosa_samantha Rh4BG404800 Rh4CG419800
rosa_wichuraiana Rw4G033810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1269
Acc16I TGCGCA 1 cut(s) 171
AciI CCGC 5 cut(s) 1106, 1163, 1381, 1395, 1444
AclWI GGATC 3 cut(s) 114, 225, 238
AcoI YGGCCR 2 cut(s) 138, 1378
AcsI RAATTY 1 cut(s) 822
AcuI CTGAAG 1 cut(s) 1389
AdeI CACNNNGTG 1 cut(s) 1364
AfaI GTAC 2 cut(s) 435, 677
AfiI CCNNNNNNNGG 2 cut(s) 76, 157
AflIII ACRYGT 2 cut(s) 457, 966
AjnI CCWGG 1 cut(s) 447
AluBI AGCT 9 cut(s) 46, 88, 380, 409, 493, 1046, 1177, 1200, 1400
AluI AGCT 9 cut(s) 46, 88, 380, 409, 493, 1046, 1177, 1200, 1400
Alw21I GWGCWC 3 cut(s) 48, 1179, 1192
Alw26I GTCTC 5 cut(s) 43, 490, 806, 1271, 1465
Alw44I GTGCAC 1 cut(s) 1188
AlwI GGATC 3 cut(s) 114, 225, 238
AlwNI CAGNNNCTG 1 cut(s) 1280
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 3 cut(s) 138, 1181, 1378
ApaLI GTGCAC 1 cut(s) 1188
ApeKI GCWGC 3 cut(s) 888, 1160, 1400
ApoI RAATTY 1 cut(s) 822
Asp700I GAANNNNTTC 2 cut(s) 1002, 1317
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 445, 1182
AsuHPI GGTGA 2 cut(s) 919, 1091
AvaI CYCGRG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 445
BaeGI GKGCMC 1 cut(s) 1192
BanII GRGCYC 2 cut(s) 48, 1179
BbsI GAAGAC 2 cut(s) 761, 1460
Bbv12I GWGCWC 3 cut(s) 48, 1179, 1192
BbvI GCAGC 3 cut(s) 875, 1147, 1387
BccI CCATC 1 cut(s) 755
BceAI ACGGC 2 cut(s) 1093, 1450
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BciT130I CCWGG 1 cut(s) 449
BclI TGATCA 1 cut(s) 1227
BcoDI GTCTC 5 cut(s) 43, 490, 806, 1271, 1465
BfaI CTAG 4 cut(s) 383, 713, 917, 1448
BfmI CTRYAG 1 cut(s) 1047
BisI GCNGC 6 cut(s) 889, 1161, 1164, 1381, 1401, 1444
BlsI GCNGC 6 cut(s) 890, 1162, 1165, 1382, 1402, 1445
BmcAI AGTACT 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 449
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 527
BmgT120I GGNCC 2 cut(s) 445, 1182
BmiI GGNNCC 3 cut(s) 81, 446, 1035
BmrFI CCNGG 1 cut(s) 449
BmrI ACTGGG 1 cut(s) 1290
BmsI GCATC 5 cut(s) 718, 799, 921, 1135, 1405
BmuI ACTGGG 1 cut(s) 1290
BpiI GAAGAC 2 cut(s) 761, 1460
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpuEI CTTGAG 4 cut(s) 665, 830, 890, 1216
BsaAI YACGTR 1 cut(s) 566
BsaBI GATNNNNATC 1 cut(s) 1023
BsaWI WCCGGW 1 cut(s) 82
BsaXI ACNNNNNCTCC 3 cut(s) 339, 369, 1447
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 157
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 1285, 1396
Bse3DI GCAATG 1 cut(s) 538
Bse8I GATNNNNATC 1 cut(s) 1023
BseBI CCWGG 1 cut(s) 449
BseGI GGATG 4 cut(s) 661, 693, 1126, 1420
BseJI GATNNNNATC 1 cut(s) 1023
BseLI CCNNNNNNNGG 2 cut(s) 76, 157
BseMI GCAATG 1 cut(s) 538
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 1285, 1396
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 1192
BseXI GCAGC 3 cut(s) 875, 1147, 1387
BseYI CCCAGC 1 cut(s) 489
BshFI GGCC 3 cut(s) 140, 1183, 1380
BsiHKAI GWGCWC 3 cut(s) 48, 1179, 1192
BsiHKCI CYCGRG 1 cut(s) 527
BsiSI CCGG 4 cut(s) 83, 94, 141, 1180
BslFI GGGAC 1 cut(s) 458
BslI CCNNNNNNNGG 2 cut(s) 76, 157
BsmAI GTCTC 5 cut(s) 43, 490, 806, 1271, 1465
BsmBI CGTCTC 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 458
BsmI GAATGC 1 cut(s) 1437
BsnI GGCC 3 cut(s) 140, 1183, 1380
BsoBI CYCGRG 1 cut(s) 527
Bsp1286I GDGCHC 3 cut(s) 48, 1179, 1192
Bsp143I GATC 5 cut(s) 106, 217, 243, 468, 1227
BspACI CCGC 5 cut(s) 1106, 1163, 1381, 1395, 1444
BspANI GGCC 3 cut(s) 140, 1183, 1380
BspCNI CTCAG 1 cut(s) 197
BspLI GGNNCC 3 cut(s) 81, 446, 1035
BspPI GGATC 3 cut(s) 114, 225, 238
BsrDI GCAATG 1 cut(s) 538
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 2 cut(s) 1285, 1396
BssAI RCCGGY 1 cut(s) 140
BssMI GATC 5 cut(s) 106, 217, 243, 468, 1227
Bst2UI CCWGG 1 cut(s) 449
Bst4CI ACNGT 2 cut(s) 600, 1459
Bst6I CTCTTC 1 cut(s) 945
BstBAI YACGTR 1 cut(s) 566
BstC8I GCNNGC 5 cut(s) 67, 265, 407, 624, 1215
BstDEI CTNAG 1 cut(s) 184
BstENI CCTNNNNNAGG 1 cut(s) 74
BstF5I GGATG 4 cut(s) 661, 693, 1126, 1420
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 5 cut(s) 109, 220, 246, 471, 1230
BstMAI GTCTC 5 cut(s) 43, 490, 806, 1271, 1465
BstMBI GATC 5 cut(s) 106, 217, 243, 468, 1227
BstMWI GCNNNNNNNGC 4 cut(s) 94, 628, 1380, 1443
BstNI CCWGG 1 cut(s) 449
BstNSI RCATGY 5 cut(s) 267, 354, 461, 970, 1211
BstSCI CCNGG 1 cut(s) 447
BstSFI CTRYAG 1 cut(s) 1047
BstSLI GKGCMC 1 cut(s) 1192
BstSNI TACGTA 1 cut(s) 566
BstV1I GCAGC 3 cut(s) 875, 1147, 1387
BstV2I GAAGAC 2 cut(s) 761, 1460
BstX2I RGATCY 2 cut(s) 217, 243
BstYI RGATCY 2 cut(s) 217, 243
BsuRI GGCC 3 cut(s) 140, 1183, 1380
BtgZI GCGATG 2 cut(s) 944, 1181
BtsCI GGATG 4 cut(s) 661, 693, 1126, 1420
Cac8I GCNNGC 5 cut(s) 67, 265, 407, 624, 1215
CaiI CAGNNNCTG 1 cut(s) 1280
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 2 cut(s) 445, 1182
Csp6I GTAC 2 cut(s) 434, 676
CviQI GTAC 2 cut(s) 434, 676
DdeI CTNAG 1 cut(s) 184
DpnI GATC 5 cut(s) 108, 219, 245, 470, 1229
DpnII GATC 5 cut(s) 106, 217, 243, 468, 1227
DraIII CACNNNGTG 1 cut(s) 1364
EaeI YGGCCR 2 cut(s) 138, 1378
Eam1104I CTCTTC 1 cut(s) 945
EarI CTCTTC 1 cut(s) 945
EciI GGCGGA 1 cut(s) 1410
Ecl136II GAGCTC 2 cut(s) 46, 1177
Eco105I TACGTA 1 cut(s) 566
Eco24I GRGCYC 2 cut(s) 48, 1179
Eco47I GGWCC 1 cut(s) 445
Eco53kI GAGCTC 2 cut(s) 46, 1177
Eco57I CTGAAG 1 cut(s) 1389
Eco88I CYCGRG 1 cut(s) 527
EcoICRI GAGCTC 2 cut(s) 46, 1177
EcoNI CCTNNNNNAGG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 447
EcoT22I ATGCAT 2 cut(s) 265, 792
EcoT38I GRGCYC 2 cut(s) 48, 1179
Esp3I CGTCTC 1 cut(s) 43
FaqI GGGAC 1 cut(s) 458
FbaI TGATCA 1 cut(s) 1227
Fnu4HI GCNGC 6 cut(s) 889, 1161, 1164, 1381, 1401, 1444
FokI GGATG 4 cut(s) 668, 700, 1113, 1427
FriOI GRGCYC 2 cut(s) 48, 1179
Fsp4HI GCNGC 6 cut(s) 889, 1161, 1164, 1381, 1401, 1444
FspBI CTAG 4 cut(s) 383, 713, 917, 1448
FspI TGCGCA 1 cut(s) 171
GlaI GCGC 1 cut(s) 171
GluI GCNGC 6 cut(s) 889, 1161, 1164, 1381, 1401, 1444
GsaI CCCAGC 1 cut(s) 493
HaeIII GGCC 3 cut(s) 140, 1183, 1380
HapII CCGG 4 cut(s) 83, 94, 141, 1180
HhaI GCGC 1 cut(s) 172
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HincII GTYRAC 3 cut(s) 255, 280, 964
HindII GTYRAC 3 cut(s) 255, 280, 964
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 6 cut(s) 5, 111, 814, 875, 1019, 1307
HpaI GTTAAC 1 cut(s) 255
HpaII CCGG 4 cut(s) 83, 94, 141, 1180
HphI GGTGA 2 cut(s) 919, 1091
Hpy166II GTNNAC 4 cut(s) 255, 280, 964, 1190
Hpy188I TCNGA 4 cut(s) 43, 549, 1252, 1312
Hpy188III TCNNGA 4 cut(s) 191, 383, 463, 869
Hpy8I GTNNAC 4 cut(s) 255, 280, 964, 1190
HpyAV CCTTC 6 cut(s) 64, 554, 897, 992, 1234, 1348
HpyCH4III ACNGT 2 cut(s) 600, 1459
HpyCH4IV ACGT 3 cut(s) 36, 251, 565
HpyF10VI GCNNNNNNNGC 4 cut(s) 94, 628, 1380, 1443
HpyF3I CTNAG 1 cut(s) 184
HpySE526I ACGT 3 cut(s) 36, 251, 565
HspAI GCGC 1 cut(s) 170
Ksp22I TGATCA 1 cut(s) 1227
KspAI GTTAAC 1 cut(s) 255
Kzo9I GATC 5 cut(s) 106, 217, 243, 468, 1227
LmnI GCTCC 6 cut(s) 51, 85, 347, 1123, 1182, 1397
Lsp1109I GCAGC 3 cut(s) 875, 1147, 1387
LweI GCATC 5 cut(s) 718, 799, 921, 1135, 1405
MaeI CTAG 4 cut(s) 383, 713, 917, 1448
MaeII ACGT 3 cut(s) 36, 251, 565
MaeIII GTNAC 5 cut(s) 143, 698, 796, 842, 1430
MalI GATC 5 cut(s) 108, 219, 245, 470, 1229
MboI GATC 5 cut(s) 106, 217, 243, 468, 1227
MboII GAAGA 6 cut(s) 253, 478, 488, 761, 962, 1465
MflI RGATCY 2 cut(s) 217, 243
MhlI GDGCHC 3 cut(s) 48, 1179, 1192
MluCI AATT 6 cut(s) 745, 822, 936, 942, 1098, 1223
MlyI GAGTC 3 cut(s) 14, 808, 1316
MmeI TCCRAC 3 cut(s) 535, 624, 1275
Mph1103I ATGCAT 2 cut(s) 265, 792
MroXI GAANNNNTTC 2 cut(s) 1002, 1317
MseI TTAA 4 cut(s) 222, 254, 726, 1149
MslI CAYNNNNRTG 1 cut(s) 1071
MspA1I CMGCKG 1 cut(s) 1383
MspI CCGG 4 cut(s) 83, 94, 141, 1180
MspR9I CCNGG 1 cut(s) 449
Mva1269I GAATGC 1 cut(s) 1437
MvaI CCWGG 1 cut(s) 449
MwoI GCNNNNNNNGC 4 cut(s) 94, 628, 1380, 1443
NdeII GATC 5 cut(s) 106, 217, 243, 468, 1227
NlaIV GGNNCC 3 cut(s) 81, 446, 1035
NmuCI GTSAC 3 cut(s) 698, 842, 1430
NsbI TGCGCA 1 cut(s) 171
NsiI ATGCAT 2 cut(s) 265, 792
NspI RCATGY 5 cut(s) 267, 354, 461, 970, 1211
PaeI GCATGC 1 cut(s) 267
PciI ACATGT 2 cut(s) 457, 966
PctI GAATGC 1 cut(s) 1437
PdmI GAANNNNTTC 2 cut(s) 1002, 1317
PfeI GAWTC 3 cut(s) 111, 875, 1019
PkrI GCNGC 6 cut(s) 890, 1162, 1165, 1382, 1402, 1445
PleI GAGTC 3 cut(s) 13, 808, 1315
PpsI GAGTC 3 cut(s) 13, 808, 1315
Ppu21I YACGTR 1 cut(s) 566
PpuMI RGGWCCY 1 cut(s) 445
PscI ACATGT 2 cut(s) 457, 966
PsiI TTATAA 1 cut(s) 1269
Psp124BI GAGCTC 2 cut(s) 48, 1179
Psp5II RGGWCCY 1 cut(s) 445
Psp6I CCWGG 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 489
PspGI CCWGG 1 cut(s) 447
PspN4I GGNNCC 3 cut(s) 81, 446, 1035
PspPI GGNCC 2 cut(s) 445, 1182
PspPPI RGGWCCY 1 cut(s) 445
PstNI CAGNNNCTG 1 cut(s) 1280
PsuI RGATCY 2 cut(s) 217, 243
RsaI GTAC 2 cut(s) 435, 677
RsaNI GTAC 2 cut(s) 434, 676
RseI CAYNNNNRTG 1 cut(s) 1071
SacI GAGCTC 2 cut(s) 48, 1179
SaqAI TTAA 4 cut(s) 222, 254, 726, 1149
SatI GCNGC 6 cut(s) 889, 1161, 1164, 1381, 1401, 1444
Sau3AI GATC 5 cut(s) 106, 217, 243, 468, 1227
Sau96I GGNCC 2 cut(s) 445, 1182
ScaI AGTACT 1 cut(s) 435
SchI GAGTC 3 cut(s) 14, 808, 1316
ScrFI CCNGG 1 cut(s) 449
SduI GDGCHC 3 cut(s) 48, 1179, 1192
SfaNI GCATC 5 cut(s) 718, 799, 921, 1135, 1405
SfcI CTRYAG 1 cut(s) 1047
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 1 cut(s) 1071
SmlI CTYRAG 4 cut(s) 680, 809, 869, 1195
SmoI CTYRAG 4 cut(s) 680, 809, 869, 1195
SnaBI TACGTA 1 cut(s) 566
SphI GCATGC 1 cut(s) 267
Sse9I AATT 6 cut(s) 745, 822, 936, 942, 1098, 1223
SsiI CCGC 5 cut(s) 1106, 1163, 1381, 1395, 1444
SspI AATATT 1 cut(s) 865
SspMI CTAG 4 cut(s) 383, 713, 917, 1448
SstI GAGCTC 2 cut(s) 48, 1179
StyD4I CCNGG 1 cut(s) 447
TaaI ACNGT 2 cut(s) 600, 1459
TaiI ACGT 3 cut(s) 39, 254, 568
TaqI TCGA 3 cut(s) 99, 109, 413
TasI AATT 6 cut(s) 745, 822, 936, 942, 1098, 1223
TatI WGTACW 1 cut(s) 433
TauI GCSGC 3 cut(s) 1166, 1383, 1446
TfiI GAWTC 3 cut(s) 111, 875, 1019
Tru1I TTAA 4 cut(s) 222, 254, 726, 1149
Tru9I TTAA 4 cut(s) 222, 254, 726, 1149
TseFI GTSAC 3 cut(s) 698, 842, 1430
TseI GCWGC 3 cut(s) 888, 1160, 1400
Tsp45I GTSAC 3 cut(s) 698, 842, 1430
TspDTI ATGAA 9 cut(s) 124, 311, 320, 390, 606, 1055, 1184, 1330, 1416
VneI GTGCAC 1 cut(s) 1188
VpaK11BI GGWCC 1 cut(s) 445
XagI CCTNNNNNAGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 822
XbaI TCTAGA 1 cut(s) 382
XceI RCATGY 5 cut(s) 267, 354, 461, 970, 1211
XmnI GAANNNNTTC 2 cut(s) 1002, 1317
XspI CTAG 4 cut(s) 383, 713, 917, 1448
ZrmI AGTACT 1 cut(s) 435
Zsp2I ATGCAT 2 cut(s) 265, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.