Rw4G033810

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0018031
Physical Location & Seq
Reverse (-)
60949736 .. 60951267
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G033810.1

Sequence Viewer

Length: 1500 bp
ATGATGGAGTCATCTCCAGCGTCTAGTCTCCTCCCTCAACAACACCACGCCTACGTCTCTGAGCTCCTCTCCTTCCCCCTCGCTCGCCTTAACAAGGAACCGGAGCTTCTCCGGCTCCACGGGGACCGAATCCAGAGCCAAATCCAAGACTTGATGGCTGGTAATTACCGAGCATTAGTTCACGCTGCACATACCTCTTTGTCAGTTCAAGACGAACTATCTTCCATTGACAAGAATCTTAAATCTCTGACGTTGGAGAAGATCCCTGAGTTAACGAATGCATGCACCGAGTTTGTTGACACTTTGGAGAAGAGGAAGAAGATGAACCAAACACAGCACTTACTTGAAATCCCTCAACTAATGGCTCTAGAGTTAGAAGCCTTTGTTCGCAAGCTTTCGACTATGCACCCCAAATTGGCAGTTGTTAGAGATCTGGCTGAACAGGTCAGGAAGATCACTCAATCTCTTGTGTCCCAGCTTCTTCAGAAACTTCGTTCGGATTTCGAGAAACCCGAGGCTGAATACTGCCTCCAGATTGTAGGATATTTACGTAGAGCAGAAGTGTATAGTGAGTATGAACTGCGGTTGCAGTTTTTGAGATGTAGGCAAGCATGGCTTACAGGAATGTTGGAGGATTTGGATGAAAGAAACCCTTACGAGTACCTCAAGGGGATGATTAGTTGTCACAGAAAGCATCTAGTTGATATTGTTAATCAATGTGTGTTGGTAAATTACGATGAAGATGATGGTGGTCTTCTCAATAGTTGGCTTATGCACCAAGTAACCTCACACCTTGAGACTCTCAAAATTCTGCTTCCAAATATCAGCGACGGAGTGTCGCTATCTAATATTCTAGAGGAATCCATGTATTGCGGCATGGTGCTTGGTAGGGTGATTGGGCTAGATTTCAGGGGTATGCTACCACCAATTTTCGAAGAGGCGGTTGTCAACATGTTCTCAAACAATGTGAGTAGAGCAGTTGAAGGTTTTCAGTTGGTTTTGGATTCACATCGTTGGGTTCTACTACCAGCTATAGCAAATAGTAGTGTTGGTGGTGGTGGTAATGATGATGATGATGACGTAATTGAACCTCCGTATTGTCTCATGGATCATCCACCTCTGGCTGTTTTTGTTAATGGAGTGTCTGCGGCGATGAATGAGCTCCGGCCCTGTGCACCCTTAAGTTTGAAGCATGAGCTTTCTAAAGAGTTGATCAAGGGATTGAAGGCTGTTTCCGACTATTTGATGACTTACGATGCAACATCTGGGATACTACTGAGAGAAAACAAAGAGTCTGAACTTTTTCTCTCACTTTGTCAAGCATTCATTGAGATTACTTACCCACACTGTGCCAAGTGCTTTGGTCGCTGTTACCCTGGCGGAGCTGCTTCAATCATGGATGCTAAGAGTTTATGTGACAGCATTCGCCGCCTAGTGATGACAGTCTCTCCCAGACCAAAACCTCCAATTGGTAATAGAGACGGAAATGAAAACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

499

Amino Acids

56.23

Weight (kDa)

5.52

Isoelectric Point (pI)

48.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 19 - 328 2.9e-75 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018031)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g33140
rosa_chinensis RchiOBHm_Chr4g0442191
rosa_laevigata RLG00000006025 RLG00000006028 RLG00000006031
rosa_multiflora Rmu_sc0010284.1_g000005
rosa_roxburghii Rroxscaffold_5G00383110
rosa_rugosa Rorug04G0339400
rosa_samantha Rh4BG404800 Rh4CG419800
rosa_wichuraiana Rw4G033810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 583, 873, 941, 1148, 1380, 1429
AclWI GGATC 2 cut(s) 256, 1116
AcsI RAATTY 1 cut(s) 807
AcuI CTGAAG 1 cut(s) 467
AdeI CACNNNGTG 1 cut(s) 1349
AfaI GTAC 1 cut(s) 662
AfiI CCNNNNNNNGG 3 cut(s) 94, 415, 1469
AflII CTTAAG 1 cut(s) 1180
AflIII ACRYGT 1 cut(s) 951
AgsI TTSAA 7 cut(s) 209, 347, 983, 1088, 1189, 1225, 1392
AhdI GACNNNNNGTC 1 cut(s) 835
AjnI CCWGG 1 cut(s) 1375
AluBI AGCT 8 cut(s) 64, 106, 394, 478, 1031, 1162, 1198, 1385
AluI AGCT 8 cut(s) 64, 106, 394, 478, 1031, 1162, 1198, 1385
Alw21I GWGCWC 3 cut(s) 66, 1164, 1177
Alw26I GTCTC 6 cut(s) 32, 61, 791, 1106, 1450, 1473
Alw44I GTGCAC 1 cut(s) 1173
AlwI GGATC 2 cut(s) 256, 1116
Ama87I CYCGRG 1 cut(s) 512
AoxI GGCC 1 cut(s) 1166
ApaLI GTGCAC 1 cut(s) 1173
ApeKI GCWGC 2 cut(s) 185, 1385
ApoI RAATTY 1 cut(s) 807
Asp700I GAANNNNTTC 2 cut(s) 987, 1302
AspS9I GGNCC 2 cut(s) 124, 1167
AsuHPI GGTGA 1 cut(s) 904
AsuII TTCGAA 1 cut(s) 933
AvaI CYCGRG 1 cut(s) 512
AvaII GGWCC 1 cut(s) 124
BaeGI GKGCMC 1 cut(s) 1177
BanII GRGCYC 2 cut(s) 66, 1164
BbsI GAAGAC 1 cut(s) 746
Bbv12I GWGCWC 3 cut(s) 66, 1164, 1177
BbvI GCAGC 2 cut(s) 172, 1372
BccI CCATC 2 cut(s) 148, 740
BciT130I CCWGG 1 cut(s) 1377
BciVI GTATCC 1 cut(s) 1263
BclI TGATCA 1 cut(s) 1212
BcoDI GTCTC 6 cut(s) 32, 61, 791, 1106, 1450, 1473
BfaI CTAG 6 cut(s) 24, 368, 698, 854, 902, 1433
BfmI CTRYAG 1 cut(s) 1032
BfrI CTTAAG 1 cut(s) 1180
BfuI GTATCC 1 cut(s) 1263
BglII AGATCT 1 cut(s) 430
BisI GCNGC 5 cut(s) 186, 874, 1149, 1386, 1429
BlsI GCNGC 5 cut(s) 187, 875, 1150, 1387, 1430
Bme1390I CCNGG 1 cut(s) 1377
Bme18I GGWCC 1 cut(s) 124
BmeRI GACNNNNNGTC 1 cut(s) 835
BmeT110I CYCGRG 1 cut(s) 512
BmgT120I GGNCC 2 cut(s) 124, 1167
BmiI GGNNCC 3 cut(s) 99, 116, 125
BmrFI CCNGG 1 cut(s) 1377
BmsI GCATC 3 cut(s) 703, 1246, 1390
BpiI GAAGAC 1 cut(s) 746
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 515
Bpu14I TTCGAA 1 cut(s) 933
BpuEI CTTGAG 2 cut(s) 650, 815
BsaAI YACGTR 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 1008
BsaJI CCNNGG 3 cut(s) 118, 513, 1375
BsaWI WCCGGW 1 cut(s) 100
BsaXI ACNNNNNCTCC 2 cut(s) 1432, 1462
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 415, 1469
Bse8I GATNNNNATC 1 cut(s) 1008
BseBI CCWGG 1 cut(s) 1377
BseDI CCNNGG 3 cut(s) 118, 513, 1375
BseGI GGATG 4 cut(s) 646, 678, 1111, 1405
BseJI GATNNNNATC 1 cut(s) 1008
BseLI CCNNNNNNNGG 3 cut(s) 94, 415, 1469
BseMII CTCAG 3 cut(s) 51, 258, 1268
BseRI GAGGAG 2 cut(s) 20, 56
BseSI GKGCMC 1 cut(s) 1177
BseXI GCAGC 2 cut(s) 172, 1372
BseYI CCCAGC 1 cut(s) 474
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 1 cut(s) 1168
BsiHKAI GWGCWC 3 cut(s) 66, 1164, 1177
BsiHKCI CYCGRG 1 cut(s) 512
BsiSI CCGG 3 cut(s) 101, 112, 1165
BslFI GGGAC 2 cut(s) 137, 457
BslI CCNNNNNNNGG 3 cut(s) 94, 415, 1469
BsmAI GTCTC 6 cut(s) 32, 61, 791, 1106, 1450, 1473
BsmBI CGTCTC 2 cut(s) 61, 1473
BsmFI GGGAC 2 cut(s) 137, 457
BsmI GAATGC 3 cut(s) 283, 1322, 1422
BsnI GGCC 1 cut(s) 1168
BsoBI CYCGRG 1 cut(s) 512
Bsp119I TTCGAA 1 cut(s) 933
Bsp1286I GDGCHC 3 cut(s) 66, 1164, 1177
Bsp143I GATC 5 cut(s) 261, 430, 453, 1108, 1212
BspACI CCGC 6 cut(s) 583, 873, 941, 1148, 1380, 1429
BspANI GGCC 1 cut(s) 1168
BspCNI CTCAG 3 cut(s) 52, 259, 1269
BspLI GGNNCC 3 cut(s) 99, 116, 125
BspPI GGATC 2 cut(s) 256, 1116
BspT104I TTCGAA 1 cut(s) 933
BspTI CTTAAG 1 cut(s) 1180
BssECI CCNNGG 3 cut(s) 118, 513, 1375
BssMI GATC 5 cut(s) 261, 430, 453, 1108, 1212
Bst2UI CCWGG 1 cut(s) 1377
Bst4CI ACNGT 2 cut(s) 1349, 1444
Bst6I CTCTTC 2 cut(s) 305, 930
BstAFI CTTAAG 1 cut(s) 1180
BstBAI YACGTR 1 cut(s) 551
BstBI TTCGAA 1 cut(s) 933
BstC8I GCNNGC 4 cut(s) 85, 283, 392, 609
BstDEI CTNAG 4 cut(s) 60, 267, 1277, 1404
BstDSI CCRYGG 1 cut(s) 118
BstENI CCTNNNNNAGG 1 cut(s) 92
BstF5I GGATG 4 cut(s) 646, 678, 1111, 1405
BstKTI GATC 5 cut(s) 264, 433, 456, 1111, 1215
BstMAI GTCTC 6 cut(s) 32, 61, 791, 1106, 1450, 1473
BstMBI GATC 5 cut(s) 261, 430, 453, 1108, 1212
BstMWI GCNNNNNNNGC 4 cut(s) 112, 613, 1365, 1428
BstNI CCWGG 1 cut(s) 1377
BstNSI RCATGY 2 cut(s) 285, 955
BstSCI CCNGG 1 cut(s) 1375
BstSFI CTRYAG 1 cut(s) 1032
BstSLI GKGCMC 1 cut(s) 1177
BstSNI TACGTA 1 cut(s) 551
BstV1I GCAGC 2 cut(s) 172, 1372
BstV2I GAAGAC 1 cut(s) 746
BstX2I RGATCY 2 cut(s) 261, 430
BstYI RGATCY 2 cut(s) 261, 430
BsuI GTATCC 1 cut(s) 1263
BsuRI GGCC 1 cut(s) 1168
BtgI CCRYGG 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 1166
BtsCI GGATG 4 cut(s) 646, 678, 1111, 1405
BtsIMutI CAGTG 1 cut(s) 1345
Cac8I GCNNGC 4 cut(s) 85, 283, 392, 609
Cfr13I GGNCC 2 cut(s) 124, 1167
CseI GACGC 1 cut(s) 9
Csp6I GTAC 1 cut(s) 661
CviAII CATG 8 cut(s) 282, 612, 865, 877, 952, 1105, 1193, 1396
CviQI GTAC 1 cut(s) 661
DdeI CTNAG 4 cut(s) 60, 267, 1277, 1404
DpnI GATC 5 cut(s) 263, 432, 455, 1110, 1214
DpnII GATC 5 cut(s) 261, 430, 453, 1108, 1212
DraIII CACNNNGTG 1 cut(s) 1349
DriI GACNNNNNGTC 1 cut(s) 835
Eam1104I CTCTTC 2 cut(s) 305, 930
Eam1105I GACNNNNNGTC 1 cut(s) 835
EarI CTCTTC 2 cut(s) 305, 930
EciI GGCGGA 1 cut(s) 1395
Ecl136II GAGCTC 2 cut(s) 64, 1162
Eco105I TACGTA 1 cut(s) 551
Eco24I GRGCYC 2 cut(s) 66, 1164
Eco47I GGWCC 1 cut(s) 124
Eco53kI GAGCTC 2 cut(s) 64, 1162
Eco57I CTGAAG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 512
EcoICRI GAGCTC 2 cut(s) 64, 1162
EcoNI CCTNNNNNAGG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 1375
EcoT22I ATGCAT 1 cut(s) 283
EcoT38I GRGCYC 2 cut(s) 66, 1164
Esp3I CGTCTC 2 cut(s) 61, 1473
FaeI CATG 8 cut(s) 285, 615, 868, 880, 955, 1108, 1196, 1399
FalI AAGNNNNNCTT 4 cut(s) 600, 632, 637, 669
FaqI GGGAC 2 cut(s) 137, 457
FatI CATG 8 cut(s) 281, 611, 864, 876, 951, 1104, 1192, 1395
FbaI TGATCA 1 cut(s) 1212
Fnu4HI GCNGC 5 cut(s) 186, 874, 1149, 1386, 1429
FokI GGATG 4 cut(s) 653, 685, 1098, 1412
FriOI GRGCYC 2 cut(s) 66, 1164
Fsp4HI GCNGC 5 cut(s) 186, 874, 1149, 1386, 1429
FspBI CTAG 6 cut(s) 24, 368, 698, 854, 902, 1433
GluI GCNGC 5 cut(s) 186, 874, 1149, 1386, 1429
GsaI CCCAGC 1 cut(s) 478
GsuI CTGGAG 1 cut(s) 515
HaeIII GGCC 1 cut(s) 1168
HapII CCGG 3 cut(s) 101, 112, 1165
HgaI GACGC 1 cut(s) 9
Hin1II CATG 8 cut(s) 285, 615, 868, 880, 955, 1108, 1196, 1399
HincII GTYRAC 3 cut(s) 273, 298, 949
HindII GTYRAC 3 cut(s) 273, 298, 949
HindIII AAGCTT 1 cut(s) 392
HinfI GANTC 7 cut(s) 8, 129, 235, 799, 860, 1004, 1292
HpaI GTTAAC 1 cut(s) 273
HpaII CCGG 3 cut(s) 101, 112, 1165
HphI GGTGA 1 cut(s) 904
Hpy166II GTNNAC 5 cut(s) 181, 273, 298, 949, 1175
Hpy188I TCNGA 6 cut(s) 61, 249, 486, 499, 1237, 1297
Hpy188III TCNNGA 7 cut(s) 133, 209, 368, 448, 505, 532, 854
Hpy8I GTNNAC 5 cut(s) 181, 273, 298, 949, 1175
Hpy99I CGWCG 1 cut(s) 833
HpyAV CCTTC 3 cut(s) 82, 977, 1219
HpyCH4III ACNGT 2 cut(s) 1349, 1444
HpyCH4IV ACGT 4 cut(s) 54, 251, 550, 1080
HpyCH4V TGCA 8 cut(s) 188, 281, 285, 406, 589, 775, 1175, 1259
HpyF10VI GCNNNNNNNGC 4 cut(s) 112, 613, 1365, 1428
HpyF3I CTNAG 4 cut(s) 60, 267, 1277, 1404
HpySE526I ACGT 4 cut(s) 54, 251, 550, 1080
Hsp92II CATG 8 cut(s) 285, 615, 868, 880, 955, 1108, 1196, 1399
Ksp22I TGATCA 1 cut(s) 1212
KspAI GTTAAC 1 cut(s) 273
Kzo9I GATC 5 cut(s) 261, 430, 453, 1108, 1212
LmnI GCTCC 5 cut(s) 69, 103, 120, 1167, 1382
Lsp1109I GCAGC 2 cut(s) 172, 1372
LweI GCATC 3 cut(s) 703, 1246, 1390
MaeI CTAG 6 cut(s) 24, 368, 698, 854, 902, 1433
MaeII ACGT 4 cut(s) 54, 251, 550, 1080
MaeIII GTNAC 4 cut(s) 683, 781, 1370, 1415
MalI GATC 5 cut(s) 263, 432, 455, 1110, 1214
MboI GATC 5 cut(s) 261, 430, 453, 1108, 1212
MfeI CAATTG 1 cut(s) 1467
MflI RGATCY 2 cut(s) 261, 430
MhlI GDGCHC 3 cut(s) 66, 1164, 1177
MluCI AATT 7 cut(s) 163, 413, 730, 807, 927, 1083, 1467
MlyI GAGTC 3 cut(s) 17, 793, 1301
MmeI TCCRAC 3 cut(s) 234, 609, 1260
Mph1103I ATGCAT 1 cut(s) 283
MroXI GAANNNNTTC 2 cut(s) 987, 1302
MseI TTAA 6 cut(s) 90, 240, 272, 711, 1134, 1181
MspCI CTTAAG 1 cut(s) 1180
MspI CCGG 3 cut(s) 101, 112, 1165
MspR9I CCNGG 1 cut(s) 1377
MunI CAATTG 1 cut(s) 1467
Mva1269I GAATGC 3 cut(s) 283, 1322, 1422
MvaI CCWGG 1 cut(s) 1377
MwoI GCNNNNNNNGC 4 cut(s) 112, 613, 1365, 1428
NdeII GATC 5 cut(s) 261, 430, 453, 1108, 1212
NlaIII CATG 8 cut(s) 285, 615, 868, 880, 955, 1108, 1196, 1399
NlaIV GGNNCC 3 cut(s) 99, 116, 125
NmuCI GTSAC 2 cut(s) 683, 1415
NsiI ATGCAT 1 cut(s) 283
NspI RCATGY 2 cut(s) 285, 955
NspV TTCGAA 1 cut(s) 933
PaeI GCATGC 1 cut(s) 285
PciI ACATGT 1 cut(s) 951
PcsI WCGNNNNNNNCGW 1 cut(s) 510
PctI GAATGC 3 cut(s) 283, 1322, 1422
PdmI GAANNNNTTC 2 cut(s) 987, 1302
PfeI GAWTC 4 cut(s) 129, 235, 860, 1004
PkrI GCNGC 5 cut(s) 187, 875, 1150, 1387, 1430
PleI GAGTC 3 cut(s) 16, 793, 1300
PpsI GAGTC 3 cut(s) 16, 793, 1300
Ppu21I YACGTR 1 cut(s) 551
PscI ACATGT 1 cut(s) 951
Psp124BI GAGCTC 2 cut(s) 66, 1164
Psp6I CCWGG 1 cut(s) 1375
PspFI CCCAGC 1 cut(s) 474
PspGI CCWGG 1 cut(s) 1375
PspN4I GGNNCC 3 cut(s) 99, 116, 125
PspPI GGNCC 2 cut(s) 124, 1167
PsuI RGATCY 2 cut(s) 261, 430
RsaI GTAC 1 cut(s) 662
RsaNI GTAC 1 cut(s) 661
SacI GAGCTC 2 cut(s) 66, 1164
SaqAI TTAA 6 cut(s) 90, 240, 272, 711, 1134, 1181
SatI GCNGC 5 cut(s) 186, 874, 1149, 1386, 1429
Sau3AI GATC 5 cut(s) 261, 430, 453, 1108, 1212
Sau96I GGNCC 2 cut(s) 124, 1167
SchI GAGTC 3 cut(s) 17, 793, 1301
ScrFI CCNGG 1 cut(s) 1377
SduI GDGCHC 3 cut(s) 66, 1164, 1177
SfaNI GCATC 3 cut(s) 703, 1246, 1390
SfcI CTRYAG 1 cut(s) 1032
SfuI TTCGAA 1 cut(s) 933
SinI GGWCC 1 cut(s) 124
SmlI CTYRAG 3 cut(s) 665, 794, 1180
SmoI CTYRAG 3 cut(s) 665, 794, 1180
SnaBI TACGTA 1 cut(s) 551
SphI GCATGC 1 cut(s) 285
Sse9I AATT 7 cut(s) 163, 413, 730, 807, 927, 1083, 1467
SsiI CCGC 6 cut(s) 583, 873, 941, 1148, 1380, 1429
SspI AATATT 1 cut(s) 850
SspMI CTAG 6 cut(s) 24, 368, 698, 854, 902, 1433
SstI GAGCTC 2 cut(s) 66, 1164
StyD4I CCNGG 1 cut(s) 1375
TaaI ACNGT 2 cut(s) 1349, 1444
TaiI ACGT 4 cut(s) 57, 254, 553, 1083
TaqI TCGA 3 cut(s) 398, 504, 933
TaqII GACCGA 1 cut(s) 141
TasI AATT 7 cut(s) 163, 413, 730, 807, 927, 1083, 1467
TauI GCSGC 3 cut(s) 876, 1151, 1431
TfiI GAWTC 4 cut(s) 129, 235, 860, 1004
Tru1I TTAA 6 cut(s) 90, 240, 272, 711, 1134, 1181
Tru9I TTAA 6 cut(s) 90, 240, 272, 711, 1134, 1181
TscAI CASTG 1 cut(s) 1352
TseFI GTSAC 2 cut(s) 683, 1415
TseI GCWGC 2 cut(s) 185, 1385
Tsp45I GTSAC 2 cut(s) 683, 1415
TspDTI ATGAA 6 cut(s) 338, 591, 657, 753, 1169, 1315
TspGWI ACGGA 3 cut(s) 846, 1083, 1497
TspRI CASTG 1 cut(s) 1352
Vha464I CTTAAG 1 cut(s) 1180
VneI GTGCAC 1 cut(s) 1173
VpaK11BI GGWCC 1 cut(s) 124
XagI CCTNNNNNAGG 1 cut(s) 92
XapI RAATTY 1 cut(s) 807
XbaI TCTAGA 2 cut(s) 367, 853
XceI RCATGY 2 cut(s) 285, 955
XmnI GAANNNNTTC 2 cut(s) 987, 1302
XspI CTAG 6 cut(s) 24, 368, 698, 854, 902, 1433
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.