FvH4_5g05650

Belongs to the GDA1 CD39 NTPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0012614
Physical Location & Seq
Forward (+)
3323899 .. 3327570
3672 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05650.t1

Sequence Viewer

Length: 1632 bp
ATGGAACCTGAATCGCCTTCCAAACTTAGGCTTTCGGGCATGGGTTTTACTCAACATAAACAGGCATTGAACACAAGTGTTCTGGTTTTAGTTACAGGACTCCTCTTGTTTGGTGTCTATTTTGCATTCAAATATGGGAGAAGCCATAGTGTATCTAAAGGGCCATATTATACCGTGGTTGTGGATTGTGGGAGCACGGGGACCCGAGTGAATGTGTATGAGTGGCTGGTGGAAGAGAGTAATAAGGAACTACCTGTTTTGTTGTATACTTATCCCGACAATTCAACTGAGAGTATGCTTTTGAAAAGTTGCAAGTATCACTGTCTGCAAACTGAGCCTGGTTTGGATAAATTTGTTGGTAACTTGTCAGGTATAAGAGCGTCTTTGGAACCGTTAATTACATGGGCAAAACATAAGGTTCCAGTTGAAAGACATGGAGACACCCCTATTTTTGTTCTAGCTACTGCTGGATTACGGAGGTTGCCTGTGGAAGATGCTAGACGGGTCTTAGATGATGTGGACGCTGTTGTGAAGCAACATTCTTTTTTTCATAAGAAGAGTTGGATAAGGGTGCTGAGTGGCAAAGAAGAAGCTTATTATGGTTGGGTGGCTCTAAATTATAAAATGGATAGCTTTAGGAATCATTCAAGATTGCCCACTTTAGGACTTCTCGACTTGGGAGGTTCGTCATTGCAGGTTGTTGTGGAAATTGAGGATGCAAGAGAAGACACACACATGGTGAGATCAAAGTTTGGCTTCGTTGAACATGATATTTTGGCATACTCGTTACCAGCATTTGGATTGAATGAAGCATTTGATAGGACGGTTGTTATGCTCAGCAACATGGAACAACTCAAAGAAAGTAGAATTGGTAAATTGGAGATCAGACATCCTTGTCTTAGCTCAGATATCGTGCATAATTATACATGCAGTAGTTGCTTTCAGCCACATGCTGGCGGTCAGGAAAATATGACTAGTAAGGTGCAGGAATCTAAATTGTCTTCTGTGCGTCTGGTTGGAGAACAAAACTGGGAGCAATGTAGAAGACTTGCAAGGGCTGCTGCTATGAATTCAAGCACACCGGACACAGCAAGGTGCTCTCATAGGGGCAGAGATATAATAAACCTGACGGCTGTTGCTCATCCCACAGCCCACTTTCATGCCCTATCTGGTTTCTTTGCTGTTTATGACAAACTAAATTTGAGTTCAAGAGCCACCTTGTCAAAGGTTTGGGAGAAAGGCCAGCAGTTATGCTCTAGATCATGGACCAACCTCTCACAAAATGGATATTTTGCTTGGCAATATTGTTTTCGGGTGCCTTATATGGCATCACTCATTGAAGATGGTCTGTGTCTTGGCGACAAAGAGATAATTTTTGGTCCTGGGGATGTTAGTTGGACATTAGGAGCTGCATTGGTAGAGGGGGAATATTTATGGCTAAGTTCTTCTCAATCTCAAAGTGGCATTTTGAACTTCAGTTTGAAGGTTGTATCCTCTCCGATTTTTGTACTGGTTTCACTTCTGTGTCTTCTACTCATTGTCTACTGTAGTAAAGTGAAGCTGCCTATGATAGGTAGCAAGGTTGCGGCTAGAGCTTCTTTGTCAGCAAGAGGACAGAAGATGATGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003006 GO:0003674 GO:0003824 GO:0004382 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006139 GO:0006152 GO:0006163 GO:0006195 GO:0006213 GO:0006220 GO:0006244 GO:0006256 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0007548 GO:0008150 GO:0008152 GO:0008406 GO:0009056 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009123 GO:0009125 GO:0009126 GO:0009128 GO:0009132 GO:0009134 GO:0009135 GO:0009137 GO:0009138 GO:0009140 GO:0009150 GO:0009154 GO:0009158 GO:0009161 GO:0009164 GO:0009166 GO:0009167 GO:0009169 GO:0009179 GO:0009181 GO:0009185 GO:0009191 GO:0009193 GO:0009195 GO:0009218 GO:0009222 GO:0009259 GO:0009261 GO:0009653 GO:0009887 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010556 GO:0010557 GO:0010559 GO:0010560 GO:0010604 GO:0012505 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0018130 GO:0019222 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0022414 GO:0030173 GO:0030334 GO:0031090 GO:0031224 GO:0031228 GO:0031300 GO:0031301 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031984 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0032879 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0034656 GO:0035262 GO:0040012 GO:0042278 GO:0042454 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043262 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044282 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045134 GO:0045137 GO:0046031 GO:0046032 GO:0046048 GO:0046128 GO:0046130 GO:0046131 GO:0046133 GO:0046135 GO:0046434 GO:0046483 GO:0046700 GO:0046710 GO:0046712 GO:0048513 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051270 GO:0055086 GO:0060049 GO:0060050 GO:0060255 GO:0061458 GO:0065007 GO:0071704 GO:0072521 GO:0072523 GO:0072527 GO:0072529 GO:0080090 GO:0098588 GO:0098791 GO:1901068 GO:1901069 GO:1901135 GO:1901136 GO:1901292 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901657 GO:1901658 GO:1903018 GO:1903020 GO:2000112 GO:2000145
KEGG Pathways
Metabolic & Signaling
ko00230 ko00240 ko05169 map00230 map00240 map05169
Pfam Domains
Protein Families
GDA1_CD39

Protein Analysis

544

Amino Acids

60.61

Weight (kDa)

8.55

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GDA1_CD39 PF01150 56 - 473 5.3e-56 GDA1/CD39 (nucleoside phosphatase) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 621
AasI GACNNNNNNGTC 1 cut(s) 894
Acc36I ACCTGC 1 cut(s) 685
AccB1I GGYRCC 1 cut(s) 1315
AccB7I CCANNNNNTGG 2 cut(s) 797, 953
AccI GTMKAC 2 cut(s) 266, 1542
AciI CCGC 2 cut(s) 957, 1586
AcsI RAATTY 3 cut(s) 350, 1069, 1198
AcuI CTGAAG 1 cut(s) 1459
AdeI CACNNNGTG 1 cut(s) 739
AfaI GTAC 1 cut(s) 1509
AfiI CCNNNNNNNGG 5 cut(s) 27, 662, 797, 953, 1571
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 2 cut(s) 337, 1381
AjuI GAANNNNNNNTTGG 2 cut(s) 852, 884
AleI CACNNNNGTG 1 cut(s) 1522
AluBI AGCT 7 cut(s) 461, 593, 633, 903, 1409, 1561, 1595
AluI AGCT 7 cut(s) 461, 593, 633, 903, 1409, 1561, 1595
Alw21I GWGCWC 2 cut(s) 197, 1100
Alw26I GTCTC 1 cut(s) 432
Ama87I CYCGRG 1 cut(s) 204
AoxI GGCC 2 cut(s) 161, 1240
ApeKI GCWGC 4 cut(s) 1058, 1061, 1409, 1561
ApoI RAATTY 3 cut(s) 350, 1069, 1198
AspS9I GGNCC 4 cut(s) 161, 201, 1266, 1379
AsuHPI GGTGA 1 cut(s) 751
AvaI CYCGRG 1 cut(s) 204
AvaII GGWCC 3 cut(s) 201, 1266, 1379
BanI GGYRCC 1 cut(s) 1315
BbsI GAAGAC 4 cut(s) 732, 993, 1051, 1520
Bbv12I GWGCWC 2 cut(s) 197, 1100
BbvI GCAGC 4 cut(s) 1045, 1048, 1396, 1548
BccI CCATC 2 cut(s) 1337, 1618
BceAI ACGGC 1 cut(s) 1146
BciT130I CCWGG 2 cut(s) 339, 1383
BciVI GTATCC 1 cut(s) 1501
BcoDI GTCTC 1 cut(s) 432
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 5 cut(s) 458, 498, 975, 1257, 1590
BfmI CTRYAG 1 cut(s) 1546
BfuAI ACCTGC 1 cut(s) 685
BfuI GTATCC 1 cut(s) 1501
BisI GCNGC 5 cut(s) 1059, 1062, 1410, 1562, 1587
BlpI GCTNAGC 1 cut(s) 836
BlsI GCNGC 5 cut(s) 1060, 1063, 1411, 1563, 1588
Bme1390I CCNGG 2 cut(s) 339, 1383
Bme18I GGWCC 3 cut(s) 201, 1266, 1379
BmeT110I CYCGRG 1 cut(s) 204
BmgT120I GGNCC 4 cut(s) 161, 201, 1266, 1379
BmiI GGNNCC 6 cut(s) 6, 202, 203, 390, 420, 1317
BmrFI CCNGG 2 cut(s) 339, 1383
BmrI ACTGGG 1 cut(s) 1039
BmsI GCATC 3 cut(s) 484, 706, 1337
BmuI ACTGGG 1 cut(s) 1039
BpiI GAAGAC 4 cut(s) 732, 993, 1051, 1520
Bpu1102I GCTNAGC 1 cut(s) 836
BsaJI CCNNGG 2 cut(s) 174, 1382
BsaWI WCCGGW 1 cut(s) 1081
Bsc4I CCNNNNNNNGG 5 cut(s) 27, 662, 797, 953, 1571
Bse1I ACTGG 3 cut(s) 422, 1034, 1515
Bse3DI GCAATG 2 cut(s) 689, 1043
BseBI CCWGG 2 cut(s) 339, 1383
BseDI CCNNGG 2 cut(s) 174, 1382
BseGI GGATG 4 cut(s) 721, 889, 1141, 1393
BseLI CCNNNNNNNGG 5 cut(s) 27, 662, 797, 953, 1571
BseMI GCAATG 2 cut(s) 689, 1043
BseMII CTCAG 5 cut(s) 279, 324, 566, 850, 918
BseNI ACTGG 3 cut(s) 422, 1034, 1515
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 1045, 1048, 1396, 1548
BsgI GTGCAG 1 cut(s) 1004
BshFI GGCC 2 cut(s) 163, 1242
BshNI GGYRCC 1 cut(s) 1315
BsiHKAI GWGCWC 2 cut(s) 197, 1100
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 1 cut(s) 1082
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 5 cut(s) 27, 662, 797, 953, 1571
BsmAI GTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 2 cut(s) 163, 1242
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 197, 1100
Bsp143I GATC 3 cut(s) 743, 882, 1259
Bsp1720I GCTNAGC 1 cut(s) 836
BspACI CCGC 2 cut(s) 957, 1586
BspANI GGCC 2 cut(s) 163, 1242
BspCNI CTCAG 5 cut(s) 280, 325, 567, 849, 917
BspLI GGNNCC 6 cut(s) 6, 202, 203, 390, 420, 1317
BspMI ACCTGC 1 cut(s) 685
BspT107I GGYRCC 1 cut(s) 1315
BsrDI GCAATG 2 cut(s) 689, 1043
BsrI ACTGG 3 cut(s) 422, 1034, 1515
BssECI CCNNGG 2 cut(s) 174, 1382
BssMI GATC 3 cut(s) 743, 882, 1259
BssNAI GTATAC 1 cut(s) 267
Bst1107I GTATAC 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 339, 1383
Bst4CI ACNGT 5 cut(s) 175, 323, 393, 826, 1547
Bst6I CTCTTC 2 cut(s) 228, 551
BstAPI GCANNNNNTGC 2 cut(s) 936, 1058
BstC8I GCNNGC 2 cut(s) 955, 1244
BstDEI CTNAG 9 cut(s) 26, 288, 333, 508, 575, 836, 899, 904, 1439
BstDSI CCRYGG 1 cut(s) 174
BstENI CCTNNNNNAGG 1 cut(s) 1569
BstF5I GGATG 4 cut(s) 721, 889, 1141, 1393
BstKTI GATC 3 cut(s) 746, 885, 1262
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 3 cut(s) 743, 882, 1259
BstMWI GCNNNNNNNGC 4 cut(s) 334, 936, 1058, 1592
BstNI CCWGG 2 cut(s) 339, 1383
BstNSI RCATGY 2 cut(s) 930, 953
BstSCI CCNGG 2 cut(s) 337, 1381
BstSFI CTRYAG 1 cut(s) 1546
BstV1I GCAGC 4 cut(s) 1045, 1048, 1396, 1548
BstV2I GAAGAC 4 cut(s) 732, 993, 1051, 1520
BstZ17I GTATAC 1 cut(s) 267
BsuI GTATCC 1 cut(s) 1501
BsuRI GGCC 2 cut(s) 163, 1242
BtgI CCRYGG 1 cut(s) 174
BtsCI GGATG 4 cut(s) 721, 889, 1141, 1393
BtsIMutI CAGTG 1 cut(s) 319
BveI ACCTGC 1 cut(s) 685
Cac8I GCNNGC 2 cut(s) 955, 1244
Cfr13I GGNCC 4 cut(s) 161, 201, 1266, 1379
CseI GACGC 3 cut(s) 369, 530, 998
Csp6I GTAC 1 cut(s) 1508
CviQI GTAC 1 cut(s) 1508
DdeI CTNAG 9 cut(s) 26, 288, 333, 508, 575, 836, 899, 904, 1439
DpnI GATC 3 cut(s) 745, 884, 1261
DpnII GATC 3 cut(s) 743, 882, 1259
DraIII CACNNNGTG 1 cut(s) 739
DrdI GACNNNNNNGTC 1 cut(s) 894
DseDI GACNNNNNNGTC 1 cut(s) 894
Eam1104I CTCTTC 2 cut(s) 228, 551
EarI CTCTTC 2 cut(s) 228, 551
Eco32I GATATC 1 cut(s) 910
Eco47I GGWCC 3 cut(s) 201, 1266, 1379
Eco57I CTGAAG 1 cut(s) 1459
Eco88I CYCGRG 1 cut(s) 204
EcoNI CCTNNNNNAGG 1 cut(s) 1569
EcoO109I RGGNCCY 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 1069
EcoRII CCWGG 2 cut(s) 337, 1381
EcoRV GATATC 1 cut(s) 910
FalI AAGNNNNNCTT 4 cut(s) 367, 399, 740, 772
FaqI GGGAC 1 cut(s) 214
FblI GTMKAC 2 cut(s) 266, 1542
Fnu4HI GCNGC 5 cut(s) 1059, 1062, 1410, 1562, 1587
FokI GGATG 4 cut(s) 728, 876, 1128, 1400
Fsp4HI GCNGC 5 cut(s) 1059, 1062, 1410, 1562, 1587
FspBI CTAG 5 cut(s) 458, 498, 975, 1257, 1590
GluI GCNGC 5 cut(s) 1059, 1062, 1410, 1562, 1587
HaeIII GGCC 2 cut(s) 163, 1242
HapII CCGG 1 cut(s) 1082
HgaI GACGC 3 cut(s) 369, 530, 998
HindIII AAGCTT 1 cut(s) 591
HinfI GANTC 4 cut(s) 11, 99, 640, 989
HpaII CCGG 1 cut(s) 1082
HphI GGTGA 1 cut(s) 751
Hpy166II GTNNAC 3 cut(s) 267, 520, 1543
Hpy188I TCNGA 3 cut(s) 887, 907, 1500
Hpy188III TCNNGA 6 cut(s) 275, 648, 671, 962, 1209, 1257
Hpy8I GTNNAC 3 cut(s) 267, 520, 1543
HpyAV CCTTC 2 cut(s) 27, 1477
HpyCH4III ACNGT 5 cut(s) 175, 323, 393, 826, 1547
HpyF10VI GCNNNNNNNGC 4 cut(s) 334, 936, 1058, 1592
HpyF3I CTNAG 9 cut(s) 26, 288, 333, 508, 575, 836, 899, 904, 1439
KflI GGGWCCC 1 cut(s) 201
Kzo9I GATC 3 cut(s) 743, 882, 1259
LmnI GCTCC 3 cut(s) 192, 1033, 1406
Lsp1109I GCAGC 4 cut(s) 1045, 1048, 1396, 1548
LweI GCATC 3 cut(s) 484, 706, 1337
MaeI CTAG 5 cut(s) 458, 498, 975, 1257, 1590
MaeIII GTNAC 3 cut(s) 91, 359, 786
MalI GATC 3 cut(s) 745, 884, 1261
MboI GATC 3 cut(s) 743, 882, 1259
MhlI GDGCHC 2 cut(s) 197, 1100
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 3 cut(s) 542, 997, 1376
MnlI CCTC 8 cut(s) 113, 471, 674, 706, 1283, 1414, 1504, 1604
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 3 cut(s) 734, 1158, 1522
MspI CCGG 1 cut(s) 1082
MspR9I CCNGG 2 cut(s) 339, 1383
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 2 cut(s) 339, 1383
MwoI GCNNNNNNNGC 4 cut(s) 334, 936, 1058, 1592
NdeII GATC 3 cut(s) 743, 882, 1259
NlaIV GGNNCC 6 cut(s) 6, 202, 203, 390, 420, 1317
NspI RCATGY 2 cut(s) 930, 953
OliI CACNNNNGTG 1 cut(s) 1522
PctI GAATGC 1 cut(s) 125
PfeI GAWTC 3 cut(s) 11, 640, 989
PflMI CCANNNNNTGG 2 cut(s) 797, 953
PkrI GCNGC 5 cut(s) 1060, 1063, 1411, 1563, 1588
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
PpuMI RGGWCCY 1 cut(s) 201
PsiI TTATAA 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 201
Psp6I CCWGG 2 cut(s) 337, 1381
PspGI CCWGG 2 cut(s) 337, 1381
PspN4I GGNNCC 6 cut(s) 6, 202, 203, 390, 420, 1317
PspPI GGNCC 4 cut(s) 161, 201, 1266, 1379
PspPPI RGGWCCY 1 cut(s) 201
RsaI GTAC 1 cut(s) 1509
RsaNI GTAC 1 cut(s) 1508
RseI CAYNNNNRTG 3 cut(s) 734, 1158, 1522
SaqAI TTAA 1 cut(s) 395
SatI GCNGC 5 cut(s) 1059, 1062, 1410, 1562, 1587
Sau3AI GATC 3 cut(s) 743, 882, 1259
Sau96I GGNCC 4 cut(s) 161, 201, 1266, 1379
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 339, 1383
SduI GDGCHC 2 cut(s) 197, 1100
SfaNI GCATC 3 cut(s) 484, 706, 1337
SfcI CTRYAG 1 cut(s) 1546
SinI GGWCC 3 cut(s) 201, 1266, 1379
SmiMI CAYNNNNRTG 3 cut(s) 734, 1158, 1522
SpeI ACTAGT 1 cut(s) 974
SsiI CCGC 2 cut(s) 957, 1586
SspI AATATT 2 cut(s) 1304, 1430
SspMI CTAG 5 cut(s) 458, 498, 975, 1257, 1590
StyD4I CCNGG 2 cut(s) 337, 1381
TaaI ACNGT 5 cut(s) 175, 323, 393, 826, 1547
TaqI TCGA 1 cut(s) 672
TatI WGTACW 1 cut(s) 1507
TauI GCSGC 1 cut(s) 1589
TfiI GAWTC 3 cut(s) 11, 640, 989
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TscAI CASTG 1 cut(s) 326
TseI GCWGC 4 cut(s) 1058, 1061, 1409, 1561
TspDTI ATGAA 4 cut(s) 539, 822, 1082, 1148
TspGWI ACGGA 1 cut(s) 490
TspRI CASTG 1 cut(s) 326
Van91I CCANNNNNTGG 2 cut(s) 797, 953
VpaK11BI GGWCC 3 cut(s) 201, 1266, 1379
XagI CCTNNNNNAGG 1 cut(s) 1569
XapI RAATTY 3 cut(s) 350, 1069, 1198
XbaI TCTAGA 1 cut(s) 1256
XceI RCATGY 2 cut(s) 930, 953
XmiI GTMKAC 2 cut(s) 266, 1542
XspI CTAG 5 cut(s) 458, 498, 975, 1257, 1590
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.