Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0013670

Physical Location & Seq

Genomic Coordinates Reverse (-)

4773666 .. 4776366

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08220.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGCAGAGTTTATGGGGTCATCTACCGCTACTGCTCCGGTCTTCCAAGGACTCGGTGGAGTACATTCTTCAAACCCTTTGGAGGACCCGAAAGACCGGTCTTGACCGACCCGACTGGGACATGATCCGAGACATGCTTCAGCTTCAAAACGAATCCGACCTCGACCCGCTTTTGGTGTGTCTTCGGATTTTGATTCGGAGATGCGTGTACGAAAATGTGAAGAGGGATGAGATTCAGAGGCTGTTTCCCGATGAGGTGTCGCCGGAATTGCAGAGGCTGTTGACGCTTTTGCTCCAGAAGTTTCAGAGAGAATGGCGGGAAGATGCAATCAAGGACCAGGGTGGTTTGCCGCGGTTGAAGACGATGACGTGGGACATGGCGATTCCGGAGGCAGAGTTTGCTGCCCCTGTTGCTGTTATCAACTTGAAGCTAGTAAATGATTCTCAGACTTGTGTTAAAGAAACAGAAGTGAAGTTTGAATTGGCTAACGATACTCTAGAAACGATGCTGAATTCCATGTATTGCATCAGGGATCAGTTTTCTAATGTGGGTGAGGCATCAAATGATCATTTATCTCAAGATGCTAATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COMM_domain

Protein Analysis

199

Amino Acids

23.11

Weight (kDa)

4.83

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013670)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08220 FvH4_5g08220
malus_domestica	MD06G1142500.v1.1
prunus_persica	Prupe.5G151800_v2.0.a1 Prupe.5G151800_v2.0.a1 Prupe.5G151800_v2.0.a1
pyrus_communis	pycom06g13230
rosa_chinensis	RchiOBHm_Chr7g0190301
rosa_laevigata	RLG00000004544
rosa_multiflora	Rmu_sc0005487.1_g000004
rosa_roxburghii	Rroxscaffold_3G00264750
rosa_rugosa	Rorug06G0503600 Rorug06G0503700 Rorug06G0503800
rosa_samantha	Rh7BG111700 Rh7CG114100 Rh7DG112300
rosa_wichuraiana	Rw7G009480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	355
AccIII	TCCGGA	1 cut(s)	388
AciI	CCGC	5 cut(s)	29, 170, 319, 353, 355
AclWI	GGATC	2 cut(s)	121, 543
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	125
AfaI	GTAC	2 cut(s)	65, 212
AfiI	CCNNNNNNNGG	2 cut(s)	84, 175
AgeI	ACCGGT	1 cut(s)	98
AgsI	TTSAA	5 cut(s)	74, 149, 361, 430, 482
AjiI	CACGTC	1 cut(s)	372
AjnI	CCWGG	1 cut(s)	339
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	2 cut(s)	145, 433
AluI	AGCT	2 cut(s)	145, 433
Alw26I	GTCTC	1 cut(s)	126
AlwI	GGATC	2 cut(s)	121, 543
AlwNI	CAGNNNCTG	2 cut(s)	244, 280
Aor13HI	TCCGGA	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AsiGI	ACCGGT	1 cut(s)	98
AspS9I	GGNCC	2 cut(s)	87, 337
AsuHPI	GGTGA	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	87, 337
BbsI	GAAGAC	3 cut(s)	36, 176, 368
BbvI	GCAGC	1 cut(s)	391
BciT130I	CCWGG	1 cut(s)	341
BclI	TGATCA	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	126
BfaI	CTAG	2 cut(s)	434, 500
BisI	GCNGC	2 cut(s)	353, 405
BlsI	GCNGC	2 cut(s)	354, 406
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	2 cut(s)	87, 337
BmgBI	CACGTC	1 cut(s)	372
BmgT120I	GGNCC	2 cut(s)	87, 337
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	341
BmrI	ACTGGG	1 cut(s)	127
BmsI	GCATC	6 cut(s)	194, 316, 498, 537, 569, 574
BmuI	ACTGGG	1 cut(s)	127
BpiI	GAAGAC	3 cut(s)	36, 176, 368
BpmI	CTGGAG	1 cut(s)	281
BpuEI	CTTGAG	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	48, 340, 353
BsaWI	WCCGGW	3 cut(s)	39, 98, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	84, 175
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	122
BseAI	TCCGGA	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	341
BseDI	CCNNGG	3 cut(s)	48, 340, 353
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	84, 175
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	391
Bsh1236I	CGCG	1 cut(s)	355
BshTI	ACCGGT	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	40, 99, 266, 389
BslFI	GGGAC	2 cut(s)	134, 389
BslI	CCNNNNNNNGG	2 cut(s)	84, 175
BsmAI	GTCTC	1 cut(s)	126
BsmFI	GGGAC	2 cut(s)	134, 389
Bsp13I	TCCGGA	1 cut(s)	388
Bsp143I	GATC	3 cut(s)	126, 535, 568
BspACI	CCGC	5 cut(s)	29, 170, 319, 353, 355
BspCNI	CTCAG	1 cut(s)	460
BspEI	TCCGGA	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	2 cut(s)	121, 543
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	98
BssECI	CCNNGG	3 cut(s)	48, 340, 353
BssMI	GATC	3 cut(s)	126, 535, 568
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	218
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstDEI	CTNAG	1 cut(s)	447
BstDSI	CCRYGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	355
BstKTI	GATC	3 cut(s)	129, 538, 571
BstMAI	GTCTC	1 cut(s)	126
BstMBI	GATC	3 cut(s)	126, 535, 568
BstMWI	GCNNNNNNNGC	4 cut(s)	271, 286, 401, 413
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	339
BstUI	CGCG	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	3 cut(s)	36, 176, 368
BtgI	CCRYGG	1 cut(s)	353
BtrI	CACGTC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	235
CaiI	CAGNNNCTG	2 cut(s)	244, 280
Cfr10I	RCCGGY	1 cut(s)	98
Cfr13I	GGNCC	2 cut(s)	87, 337
Cfr42I	CCGCGG	1 cut(s)	356
CseI	GACGC	1 cut(s)	295
Csp6I	GTAC	2 cut(s)	64, 211
CspAI	ACCGGT	1 cut(s)	98
CviAII	CATG	4 cut(s)	124, 136, 379, 520
CviJI	RGCY	5 cut(s)	145, 244, 280, 433, 488
CviKI_1	RGCY	5 cut(s)	145, 244, 280, 433, 488
CviQI	GTAC	2 cut(s)	64, 211
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	128, 537, 570
DpnII	GATC	3 cut(s)	126, 535, 568
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	2 cut(s)	87, 337
Eco57I	CTGAAG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	48
EcoT22I	ATGCAT	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	127, 139, 382, 523
FaiI	YATR	6 cut(s)	16, 125, 137, 380, 521, 595
FaqI	GGGAC	2 cut(s)	134, 389
FatI	CATG	4 cut(s)	123, 135, 378, 519
FauI	CCCGC	2 cut(s)	177, 312
FbaI	TGATCA	1 cut(s)	568
Fnu4HI	GCNGC	2 cut(s)	353, 405
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	353, 405
FspBI	CTAG	2 cut(s)	434, 500
GluI	GCNGC	2 cut(s)	353, 405
GsuI	CTGGAG	1 cut(s)	281
HapII	CCGG	4 cut(s)	40, 99, 266, 389
HgaI	GACGC	1 cut(s)	295
Hin1II	CATG	4 cut(s)	127, 139, 382, 523
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HinfI	GANTC	6 cut(s)	53, 155, 196, 235, 385, 443
HpaII	CCGG	4 cut(s)	40, 99, 266, 389
HphI	GGTGA	1 cut(s)	566
Hpy166II	GTNNAC	2 cut(s)	211, 285
Hpy188I	TCNGA	7 cut(s)	131, 160, 189, 201, 240, 309, 450
Hpy188III	TCNNGA	6 cut(s)	104, 251, 298, 389, 500, 581
Hpy8I	GTNNAC	2 cut(s)	211, 285
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	274, 329, 528, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	271, 286, 401, 413
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	4 cut(s)	127, 139, 382, 523
Kpn2I	TCCGGA	1 cut(s)	388
Ksp22I	TGATCA	1 cut(s)	568
KspI	CCGCGG	1 cut(s)	356
Kzo9I	GATC	3 cut(s)	126, 535, 568
LmnI	GCTCC	3 cut(s)	4, 42, 300
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	6 cut(s)	194, 316, 498, 537, 569, 574
MaeI	CTAG	2 cut(s)	434, 500
MaeII	ACGT	1 cut(s)	371
MalI	GATC	3 cut(s)	128, 537, 570
MboI	GATC	3 cut(s)	126, 535, 568
MboII	GAAGA	6 cut(s)	36, 62, 176, 235, 335, 373
MluCI	AATT	3 cut(s)	269, 482, 514
MlyI	GAGTC	1 cut(s)	47
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	8 cut(s)	78, 173, 219, 234, 250, 270, 385, 550
Mph1103I	ATGCAT	1 cut(s)	595
MroI	TCCGGA	1 cut(s)	388
MseI	TTAA	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	4 cut(s)	40, 99, 266, 389
MspR9I	CCNGG	1 cut(s)	341
MvaI	CCWGG	1 cut(s)	341
MvnI	CGCG	1 cut(s)	355
MwoI	GCNNNNNNNGC	4 cut(s)	271, 286, 401, 413
NdeII	GATC	3 cut(s)	126, 535, 568
NlaIII	CATG	4 cut(s)	127, 139, 382, 523
NlaIV	GGNNCC	1 cut(s)	89
NsiI	ATGCAT	1 cut(s)	595
NspI	RCATGY	1 cut(s)	139
PfeI	GAWTC	5 cut(s)	155, 196, 235, 385, 443
PinAI	ACCGGT	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	354, 406
PleI	GAGTC	1 cut(s)	47
PpsI	GAGTC	1 cut(s)	47
PpuMI	RGGWCCY	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	339
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	2 cut(s)	87, 337
PspPPI	RGGWCCY	1 cut(s)	87
PstNI	CAGNNNCTG	2 cut(s)	244, 280
RsaI	GTAC	2 cut(s)	65, 212
RsaNI	GTAC	2 cut(s)	64, 211
SacII	CCGCGG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	2 cut(s)	353, 405
Sau3AI	GATC	3 cut(s)	126, 535, 568
Sau96I	GGNCC	2 cut(s)	87, 337
SchI	GAGTC	1 cut(s)	47
ScrFI	CCNGG	1 cut(s)	341
SetI	ASST	5 cut(s)	147, 165, 261, 374, 435
SfaNI	GCATC	6 cut(s)	194, 316, 498, 537, 569, 574
Sfr303I	CCGCGG	1 cut(s)	356
SgrBI	CCGCGG	1 cut(s)	356
SinI	GGWCC	2 cut(s)	87, 337
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	3 cut(s)	269, 482, 514
SsiI	CCGC	5 cut(s)	29, 170, 319, 353, 355
SspMI	CTAG	2 cut(s)	434, 500
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	48
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	1 cut(s)	165
TaqII	GACCGA	1 cut(s)	123
TasI	AATT	3 cut(s)	269, 482, 514
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	5 cut(s)	155, 196, 235, 385, 443
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TseI	GCWGC	1 cut(s)	404
VpaK11BI	GGWCC	2 cut(s)	87, 337
XapI	RAATTY	1 cut(s)	514
XbaI	TCTAGA	1 cut(s)	499
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	2 cut(s)	434, 500
Zsp2I	ATGCAT	1 cut(s)	595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.