MD06G1142500.v1.1

COMM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0013670
Physical Location & Seq
Forward (+)
28617382 .. 28619360
1979 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1142500.v1.1.491

Sequence Viewer

Length: 600 bp
ATGGAGCACACGCTGTGGAGCCACTTGCCGCTACTGGTCCGGTCCAATTCGAAGGAGTCGGTGGAGTACATTCTTCAGGCCCTTTGGAGGACCCGAAAAACCGGTCTCGACCCGGCCGACCGAGACATAATCCGAGATATGCTCCAGCTCCAGAATGAATCGGACATCGACCCGCTTTTGGTGTGCCTGCGAATGTTGATTCGGCGATGTGTTTACGATAACGTCAAGAGGGAGGAGATTCAGAAGCTGTTTCCCAGCGAGGTGTTGCCTGAGTTGCAGAGGCTGTTGACGCTTTTGCTGCAGAAGTTTCAGGGAGAATGGCGGCGAGATGCACTCAAAGATCAGGGTGCTTTGCCACGGTTAAAGACGATGACATGGGACATGGCGAATCCGGACGCTGAATTCACAGTCCCCATGGCTGTGATCAACTTGAAGTTACTAAATGATTCGCAGTCCCGCTCAAAAGAATCGGAAGTGAAGTTCGAATTAGCTAATGATACTCTTGAAACAATGCTGAATTCCATGTATTGCATAAGAGACCAGTTCTCTAACTCGGGTGAGGCATCAAATGACCAGTTATATCAAGATGTGAATATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

200

Amino Acids

23.27

Weight (kDa)

5.08

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 391
AciI CCGC 4 cut(s) 29, 173, 322, 457
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 401, 517
AcuI CTGAAG 1 cut(s) 59
AdeI CACNNNGTG 1 cut(s) 15
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 87, 178
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 2 cut(s) 433, 506
AloI GAACNNNNNNTCC 2 cut(s) 464, 496
AluBI AGCT 3 cut(s) 148, 247, 491
AluI AGCT 3 cut(s) 148, 247, 491
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 3 cut(s) 110, 117, 531
AlwNI CAGNNNCTG 2 cut(s) 247, 283
Ama87I CYCGRG 1 cut(s) 553
Aor13HI TCCGGA 1 cut(s) 391
AoxI GGCC 2 cut(s) 78, 114
ApeKI GCWGC 1 cut(s) 298
ApoI RAATTY 2 cut(s) 401, 517
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 4 cut(s) 37, 42, 79, 90
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 569
AsuII TTCGAA 2 cut(s) 50, 483
AvaI CYCGRG 1 cut(s) 553
AvaII GGWCC 3 cut(s) 37, 42, 90
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 285
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 3 cut(s) 110, 117, 531
BfmI CTRYAG 1 cut(s) 299
BisI GCNGC 3 cut(s) 29, 299, 323
BlsI GCNGC 3 cut(s) 30, 300, 324
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 3 cut(s) 37, 42, 90
BmeT110I CYCGRG 1 cut(s) 553
BmgT120I GGNCC 4 cut(s) 37, 42, 79, 90
BmiI GGNNCC 2 cut(s) 20, 92
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 319, 572
BplI GAGNNNNNCTC 4 cut(s) 126, 158, 318, 350
BpmI CTGGAG 2 cut(s) 128, 134
Bpu14I TTCGAA 2 cut(s) 50, 483
BpuMI CCSGG 1 cut(s) 113
BsaI GGTCTC 2 cut(s) 110, 531
BsaJI CCNNGG 2 cut(s) 356, 414
BsaWI WCCGGW 3 cut(s) 39, 101, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 178
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 3 cut(s) 39, 541, 574
BseAI TCCGGA 1 cut(s) 391
BseDI CCNNGG 2 cut(s) 356, 414
BseLI CCNNNNNNNGG 2 cut(s) 87, 178
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 3 cut(s) 39, 541, 574
BseRI GAGGAG 1 cut(s) 248
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 285
BseYI CCCAGC 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 117, 121
BshFI GGCC 2 cut(s) 80, 116
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 2 cut(s) 117, 121
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 1 cut(s) 553
BsiSI CCGG 4 cut(s) 40, 102, 113, 392
BslFI GGGAC 3 cut(s) 392, 395, 439
BslI CCNNNNNNNGG 2 cut(s) 87, 178
BsmAI GTCTC 3 cut(s) 110, 117, 531
BsmFI GGGAC 3 cut(s) 392, 395, 439
BsnI GGCC 2 cut(s) 80, 116
Bso31I GGTCTC 2 cut(s) 110, 531
BsoBI CYCGRG 1 cut(s) 553
Bsp119I TTCGAA 2 cut(s) 50, 483
Bsp1286I GDGCHC 1 cut(s) 9
Bsp13I TCCGGA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 340, 423
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 4 cut(s) 29, 173, 322, 457
BspANI GGCC 2 cut(s) 80, 116
BspCNI CTCAG 1 cut(s) 262
BspEI TCCGGA 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 20, 92
BspMAI CTGCAG 1 cut(s) 303
BspT104I TTCGAA 2 cut(s) 50, 483
BspTNI GGTCTC 2 cut(s) 110, 531
BsrBI CCGCTC 1 cut(s) 459
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 3 cut(s) 39, 541, 574
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 2 cut(s) 356, 414
BssMI GATC 2 cut(s) 340, 423
BssT1I CCWWGG 1 cut(s) 414
Bst4CI ACNGT 2 cut(s) 360, 409
BstBI TTCGAA 2 cut(s) 50, 483
BstC8I GCNNGC 1 cut(s) 188
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 2 cut(s) 356, 414
BstKTI GATC 2 cut(s) 343, 426
BstMAI GTCTC 3 cut(s) 110, 117, 531
BstMBI GATC 2 cut(s) 340, 423
BstMCI CGRYCG 2 cut(s) 117, 121
BstMWI GCNNNNNNNGC 3 cut(s) 274, 289, 298
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 1 cut(s) 285
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 2 cut(s) 80, 116
BtgI CCRYGG 2 cut(s) 356, 414
BtgZI GCGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 188
CaiI CAGNNNCTG 2 cut(s) 247, 283
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 4 cut(s) 37, 42, 79, 90
CseI GACGC 2 cut(s) 298, 404
Csp6I GTAC 1 cut(s) 67
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 4 cut(s) 375, 382, 415, 523
CviJI RGCY 8 cut(s) 21, 80, 116, 148, 247, 283, 419, 491
CviKI_1 RGCY 8 cut(s) 21, 80, 116, 148, 247, 283, 419, 491
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 1 cut(s) 270
DpnI GATC 2 cut(s) 342, 425
DpnII GATC 2 cut(s) 340, 423
DraIII CACNNNGTG 1 cut(s) 15
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 414
Eco31I GGTCTC 2 cut(s) 110, 531
Eco47I GGWCC 3 cut(s) 37, 42, 90
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 553
EcoO109I RGGNCCY 2 cut(s) 79, 90
EcoRI GAATTC 2 cut(s) 401, 517
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 4 cut(s) 378, 385, 418, 526
FaqI GGGAC 3 cut(s) 392, 395, 439
FatI CATG 4 cut(s) 374, 381, 414, 522
FauI CCCGC 2 cut(s) 180, 464
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 29, 299, 323
Fsp4HI GCNGC 3 cut(s) 29, 299, 323
GluI GCNGC 3 cut(s) 29, 299, 323
GsaI CCCAGC 1 cut(s) 258
GsuI CTGGAG 2 cut(s) 128, 134
HaeIII GGCC 2 cut(s) 80, 116
HapII CCGG 4 cut(s) 40, 102, 113, 392
HgaI GACGC 2 cut(s) 298, 404
Hin1II CATG 4 cut(s) 378, 385, 418, 526
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HinfI GANTC 7 cut(s) 56, 158, 199, 238, 388, 446, 467
HpaII CCGG 4 cut(s) 40, 102, 113, 392
HphI GGTGA 1 cut(s) 569
Hpy166II GTNNAC 2 cut(s) 214, 288
Hpy188I TCNGA 4 cut(s) 134, 163, 243, 472
Hpy188III TCNNGA 6 cut(s) 107, 151, 226, 392, 503, 584
Hpy8I GTNNAC 2 cut(s) 214, 288
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 2 cut(s) 360, 409
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 4 cut(s) 277, 301, 332, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 289, 298
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 4 cut(s) 378, 385, 418, 526
Kpn2I TCCGGA 1 cut(s) 391
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 2 cut(s) 340, 423
LmnI GCTCC 4 cut(s) 4, 18, 147, 153
Lsp1109I GCAGC 1 cut(s) 285
LweI GCATC 2 cut(s) 319, 572
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 435
MalI GATC 2 cut(s) 342, 425
MbiI CCGCTC 1 cut(s) 459
MboI GATC 2 cut(s) 340, 423
MboII GAAGA 1 cut(s) 65
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 46, 401, 485, 517
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 6 cut(s) 81, 222, 226, 253, 273, 553
MroI TCCGGA 1 cut(s) 391
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 419
MspI CCGG 4 cut(s) 40, 102, 113, 392
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 274, 289, 298
NciI CCSGG 1 cut(s) 113
NcoI CCATGG 1 cut(s) 414
NdeII GATC 2 cut(s) 340, 423
NlaIII CATG 4 cut(s) 378, 385, 418, 526
NlaIV GGNNCC 2 cut(s) 20, 92
NspV TTCGAA 2 cut(s) 50, 483
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 6 cut(s) 158, 199, 238, 388, 446, 467
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 30, 300, 324
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
PspFI CCCAGC 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 20, 92
PspPI GGNCC 4 cut(s) 37, 42, 79, 90
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 1 cut(s) 303
PstNI CAGNNNCTG 2 cut(s) 247, 283
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 3 cut(s) 29, 299, 323
Sau3AI GATC 2 cut(s) 340, 423
Sau96I GGNCC 4 cut(s) 37, 42, 79, 90
SchI GAGTC 1 cut(s) 65
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 150, 225, 249, 264, 493
SfaNI GCATC 2 cut(s) 319, 572
SfcI CTRYAG 1 cut(s) 299
SfuI TTCGAA 2 cut(s) 50, 483
SinI GGWCC 3 cut(s) 37, 42, 90
SmiMI CAYNNNNRTG 1 cut(s) 419
Sse9I AATT 4 cut(s) 46, 401, 485, 517
SsiI CCGC 4 cut(s) 29, 173, 322, 457
StyD4I CCNGG 1 cut(s) 111
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 2 cut(s) 360, 409
TaiI ACGT 1 cut(s) 225
TaqI TCGA 4 cut(s) 50, 108, 168, 483
TaqII GACCGA 1 cut(s) 135
TasI AATT 4 cut(s) 46, 401, 485, 517
TatI WGTACW 1 cut(s) 66
TauI GCSGC 2 cut(s) 31, 325
TfiI GAWTC 6 cut(s) 158, 199, 238, 388, 446, 467
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TseI GCWGC 1 cut(s) 298
TspDTI ATGAA 1 cut(s) 171
VpaK11BI GGWCC 3 cut(s) 37, 42, 90
XapI RAATTY 2 cut(s) 401, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.