Rw7G009480

COMM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0013670
Physical Location & Seq
Forward (+)
8876279 .. 8877970
1692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G009480.1

Sequence Viewer

Length: 537 bp
ATGGAACAGACTTTATGGGGTCATTTACCGCTACTGGTCCGGTCAAATTCCAAGGACTCGGTGGAGTACATTCTTCAAACCCTTTGGAGGACCCGAAAGACCGGTCTGGACCGGGCCGATCGGGACATAATCCAAGATATGCTCCAGCTTCAAAACGAATCGGACCTCGACCCGCTTTTGGTGTGTCTTCGGATTTTGATTCGGAGATGCGTGCACGAAAATGTGAAGAGGGATGAGATTCAGAAGCTGCTGTTGACGCTTTTGCTGCAGAAGTTTCAAAGAGAATGGCGGGAAGATGCACTCAAGGACCAGGGTGATTTGCCGCGGTTGAAGACGATGACATGGGACATGGCGAATCAGGAGGCAGAGTTTGCTGAGCCTGTTGCTGTTATCAACTTGAAGCTCCTAAATGATTCTCAGTCTCGTGTTAAAGAAACAGAAGTGAAGTTTGAATTGGCTAATGATACTCTAGAAACCATGCTGAATTCCATGTATTGCATTAGAGATCAGTTTTCTAACGTGATGAGAGGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
COMM_domain

Protein Analysis

178

Amino Acids

21.04

Weight (kDa)

5.48

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 325
AciI CCGC 5 cut(s) 29, 173, 289, 323, 325
AcsI RAATTY 2 cut(s) 46, 484
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 2 cut(s) 87, 178
AgeI ACCGGT 1 cut(s) 101
AgsI TTSAA 6 cut(s) 77, 152, 278, 331, 400, 452
AjnI CCWGG 1 cut(s) 309
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AluBI AGCT 3 cut(s) 148, 247, 403
AluI AGCT 3 cut(s) 148, 247, 403
Alw21I GWGCWC 1 cut(s) 216
Alw26I GTCTC 1 cut(s) 426
Alw44I GTGCAC 1 cut(s) 212
AlwNI CAGNNNCTG 1 cut(s) 247
AoxI GGCC 1 cut(s) 114
ApaLI GTGCAC 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 247, 265
ApoI RAATTY 2 cut(s) 46, 484
ArsI GACNNNNNNTTYG 2 cut(s) 88, 120
AsiGI ACCGGT 1 cut(s) 101
AspS9I GGNCC 6 cut(s) 37, 90, 109, 114, 163, 307
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 1 cut(s) 326
AvaII GGWCC 5 cut(s) 37, 90, 109, 163, 307
BaeGI GKGCMC 1 cut(s) 216
BauI CACGAG 1 cut(s) 423
BbsI GAAGAC 2 cut(s) 179, 338
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 2 cut(s) 234, 252
BciT130I CCWGG 1 cut(s) 311
BcnI CCSGG 1 cut(s) 113
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 1 cut(s) 470
BfmI CTRYAG 1 cut(s) 266
BisI GCNGC 3 cut(s) 248, 266, 323
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 3 cut(s) 249, 267, 324
Bme1390I CCNGG 2 cut(s) 113, 311
Bme18I GGWCC 5 cut(s) 37, 90, 109, 163, 307
BmgT120I GGNCC 6 cut(s) 37, 90, 109, 114, 163, 307
BmiI GGNNCC 1 cut(s) 92
BmrFI CCNGG 2 cut(s) 113, 311
BmsI GCATC 2 cut(s) 197, 286
BpiI GAAGAC 2 cut(s) 179, 338
BpmI CTGGAG 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 113
BsaJI CCNNGG 3 cut(s) 51, 310, 323
BsaWI WCCGGW 2 cut(s) 39, 101
BsaXI ACNNNNNCTCC 2 cut(s) 353, 383
Bsc4I CCNNNNNNNGG 2 cut(s) 87, 178
Bse118I RCCGGY 1 cut(s) 101
Bse1I ACTGG 1 cut(s) 39
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 51, 310, 323
BseGI GGATG 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 87, 178
BseMII CTCAG 2 cut(s) 366, 431
BseNI ACTGG 1 cut(s) 39
BseSI GKGCMC 1 cut(s) 216
BseXI GCAGC 2 cut(s) 234, 252
Bsh1236I CGCG 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 1 cut(s) 116
BshTI ACCGGT 1 cut(s) 101
BsiEI CGRYCG 1 cut(s) 121
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 3 cut(s) 40, 102, 112
BslFI GGGAC 2 cut(s) 137, 359
BslI CCNNNNNNNGG 2 cut(s) 87, 178
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 2 cut(s) 137, 359
BsnI GGCC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 216
Bsp143I GATC 2 cut(s) 118, 505
Bsp1720I GCTNAGC 1 cut(s) 375
BspACI CCGC 5 cut(s) 29, 173, 289, 323, 325
BspANI GGCC 1 cut(s) 116
BspCNI CTCAG 2 cut(s) 367, 430
BspFNI CGCG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 92
BspMAI CTGCAG 1 cut(s) 270
BsrFI RCCGGY 1 cut(s) 101
BsrI ACTGG 1 cut(s) 39
BssAI RCCGGY 1 cut(s) 101
BssECI CCNNGG 3 cut(s) 51, 310, 323
BssMI GATC 2 cut(s) 118, 505
BssSI CACGAG 1 cut(s) 423
BssT1I CCWWGG 1 cut(s) 51
Bst2BI CACGAG 1 cut(s) 423
Bst2UI CCWGG 1 cut(s) 311
Bst6I CTCTTC 1 cut(s) 221
BstAPI GCANNNNNTGC 1 cut(s) 371
BstC8I GCNNGC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 375, 417
BstDSI CCRYGG 1 cut(s) 323
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 325
BstKTI GATC 2 cut(s) 121, 508
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 2 cut(s) 118, 505
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 3 cut(s) 256, 265, 371
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 111, 309
BstSFI CTRYAG 1 cut(s) 266
BstSLI GKGCMC 1 cut(s) 216
BstUI CGCG 1 cut(s) 325
BstV1I GCAGC 2 cut(s) 234, 252
BstV2I GAAGAC 2 cut(s) 179, 338
BsuRI GGCC 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 323
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 212
CaiI CAGNNNCTG 1 cut(s) 247
Cfr10I RCCGGY 1 cut(s) 101
Cfr13I GGNCC 6 cut(s) 37, 90, 109, 114, 163, 307
Cfr42I CCGCGG 1 cut(s) 326
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 67
CspAI ACCGGT 1 cut(s) 101
CviAII CATG 4 cut(s) 342, 349, 478, 490
CviJI RGCY 6 cut(s) 116, 148, 247, 379, 403, 458
CviKI_1 RGCY 6 cut(s) 116, 148, 247, 379, 403, 458
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 2 cut(s) 375, 417
DpnI GATC 2 cut(s) 120, 507
DpnII GATC 2 cut(s) 118, 505
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 51
Eco47I GGWCC 5 cut(s) 37, 90, 109, 163, 307
EcoO109I RGGNCCY 1 cut(s) 90
EcoRI GAATTC 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 51
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 345, 352, 481, 493
FaiI YATR 7 cut(s) 16, 128, 140, 343, 350, 479, 491
FaqI GGGAC 2 cut(s) 137, 359
FatI CATG 4 cut(s) 341, 348, 477, 489
FauI CCCGC 2 cut(s) 180, 282
Fnu4HI GCNGC 3 cut(s) 248, 266, 323
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 3 cut(s) 248, 266, 323
FspBI CTAG 1 cut(s) 470
GluI GCNGC 3 cut(s) 248, 266, 323
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 116
HapII CCGG 3 cut(s) 40, 102, 112
HgaI GACGC 1 cut(s) 265
Hin1II CATG 4 cut(s) 345, 352, 481, 493
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HinfI GANTC 6 cut(s) 56, 158, 199, 238, 355, 413
HpaII CCGG 3 cut(s) 40, 102, 112
HphI GGTGA 1 cut(s) 326
Hpy166II GTNNAC 2 cut(s) 214, 255
Hpy188I TCNGA 4 cut(s) 163, 192, 204, 243
Hpy188III TCNNGA 4 cut(s) 107, 122, 359, 470
Hpy8I GTNNAC 2 cut(s) 214, 255
HpyCH4IV ACGT 1 cut(s) 519
HpyCH4V TGCA 4 cut(s) 214, 268, 299, 498
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 265, 371
HpyF3I CTNAG 2 cut(s) 375, 417
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 345, 352, 481, 493
KspI CCGCGG 1 cut(s) 326
Kzo9I GATC 2 cut(s) 118, 505
LmnI GCTCC 2 cut(s) 147, 408
Lsp1109I GCAGC 2 cut(s) 234, 252
LweI GCATC 2 cut(s) 197, 286
MaeI CTAG 1 cut(s) 470
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 530
MalI GATC 2 cut(s) 120, 507
MboI GATC 2 cut(s) 118, 505
MboII GAAGA 5 cut(s) 65, 179, 238, 305, 343
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 3 cut(s) 46, 452, 484
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 5 cut(s) 81, 176, 222, 355, 521
MseI TTAA 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 219
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 3 cut(s) 40, 102, 112
MspR9I CCNGG 2 cut(s) 113, 311
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 1 cut(s) 325
MwoI GCNNNNNNNGC 3 cut(s) 256, 265, 371
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 118, 505
NlaIII CATG 4 cut(s) 345, 352, 481, 493
NlaIV GGNNCC 1 cut(s) 92
NmuCI GTSAC 1 cut(s) 530
PfeI GAWTC 5 cut(s) 158, 199, 238, 355, 413
PinAI ACCGGT 1 cut(s) 101
PkrI GCNGC 3 cut(s) 249, 267, 324
Ple19I CGATCG 1 cut(s) 121
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PpuMI RGGWCCY 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 92
PspPI GGNCC 6 cut(s) 37, 90, 109, 114, 163, 307
PspPPI RGGWCCY 1 cut(s) 90
PstI CTGCAG 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 247
PvuI CGATCG 1 cut(s) 121
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 219
SacII CCGCGG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 3 cut(s) 248, 266, 323
Sau3AI GATC 2 cut(s) 118, 505
Sau96I GGNCC 6 cut(s) 37, 90, 109, 114, 163, 307
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 2 cut(s) 113, 311
SduI GDGCHC 1 cut(s) 216
SetI ASST 6 cut(s) 150, 168, 249, 405, 522, 532
SfaNI GCATC 2 cut(s) 197, 286
SfcI CTRYAG 1 cut(s) 266
Sfr303I CCGCGG 1 cut(s) 326
SgrBI CCGCGG 1 cut(s) 326
SinI GGWCC 5 cut(s) 37, 90, 109, 163, 307
SmiMI CAYNNNNRTG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 46, 452, 484
SsiI CCGC 5 cut(s) 29, 173, 289, 323, 325
SspMI CTAG 1 cut(s) 470
StyD4I CCNGG 2 cut(s) 111, 309
StyI CCWWGG 1 cut(s) 51
TaiI ACGT 1 cut(s) 522
TaqI TCGA 1 cut(s) 168
TasI AATT 3 cut(s) 46, 452, 484
TatI WGTACW 1 cut(s) 66
TauI GCSGC 1 cut(s) 325
TfiI GAWTC 5 cut(s) 158, 199, 238, 355, 413
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TseFI GTSAC 1 cut(s) 530
TseI GCWGC 2 cut(s) 247, 265
Tsp45I GTSAC 1 cut(s) 530
VneI GTGCAC 1 cut(s) 212
VpaK11BI GGWCC 5 cut(s) 37, 90, 109, 163, 307
XapI RAATTY 2 cut(s) 46, 484
XbaI TCTAGA 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 58
XspI CTAG 1 cut(s) 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.