FvH4_5g09540

F-box FBD LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0020325
Physical Location & Seq
Reverse (-)
5530158 .. 5532585
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g09540.t1

Sequence Viewer

Length: 1467 bp
ATGGCGTTGGACAGGATAAGCAACTTCGAAATTGATATTACAAAGAAAATTTTCTCATATTTGTCCATCAAGGAGGCAGCAAGGACCAGTGTTGTATCGAAAAACTGGAGGCACAAATGGACTGTGCTTCCATGTCTTGTGTTTGATGATGAAAATGGCTTCTCCACTGAGATAATCATATCTGATGTTCTTCTATATCATAGTGGCTCAATAGACAGTTTCAAGCTTTCCAGTCGAAAAAATCTCCACGATGGTTATATTGAGCAATGGCTCCAAAATCTATCAATAAACTCTATCAAAGAGATTATAGTGAAAAAAAGGGATAGGTACTCATCATCCTATAGAATCTCCTCCCATTTGTATTCTTGTCGAGAATTGACTCATTTAGAGTTGTACAATTGTTCGCTGAAACCCCCATTGAAACCCCCATCGACATCAAAAGGCTTTGAGATGTTGAAGAGCCTTCGTATTCGAAGAGTTATTGTAGCCCGGGATGTGTTAGAAGAAGTGATTTCTCACTGTCCTCAGCTTGAGAAGATAAGTTTATGCAACTTACGTGGTATGGAAAATCTAAAGATTGATGCACCCAATGTCCAATTTCTTGAACTTCGAGATGGTTTTGACGATGTTGTACTTGAGAATACCCTAGATCTTGTTGATGTTTCGATTAACCGAAAACGGGGTTCTACCGATTCTAGCACATTGCTCAAGTTTTTCTTGAATCTTCCTAGTATTGAGAGGCTCACACTCGAGGATAGTTTCTTAGAGTGTGCTAATGGTTCGTTGCCGGAGAAGTTACCTGATCCAATTCTAGCCCTAAAATTTCTTTCTATAAGCATACGCTTGAATAATCTGGAGGATATTTCAACCGCTATGTGCCTTCTGAGGAGCTCACCTGCTCTACAAGAATTAGAAATTTCGGTTAACAAAGACCGAAATGTGGCTGATGATACCGAAGAAGCAACCTGCAATTGGTTAAATAACAAGCAGAATCGCGCAGTCACTCAACTGCGAGTTTTGAAAGTAACAGGCTTCTCATGTGTCAAAGCCGAACTGGACTTCATCGTATTTCTGCTTTCAAGCTCCCCTGCTCTTCAACAACTAGAAATTTCGTTTGCGCGGAAAGTTGTTGAAGCTGAGAACTATTCTTGGTTATTTGATAATCAGAACAATATTGGTGCATTCATGCAACTGCGACTTGTGAAAGTAACTAGATTATCTGGTAACAAAGCTGAAGTAAATTTCATCAGATTTGTTCTATATAGTACTTCACCTATGCTTGAGAAGCTGACTCTTCAACCTGCTGCTTCTGCCAAAGCACTTTGGGAATTATTTAAAATGTTAGGCGAGTTCATCAACCGCGTCTCAGAACCTGCAGACTTGGAGTTCTTGGACCCATCAATTCGTGGGCATGAGTCTGATAACTCGTCTTCTTCCGATTCCGATGATGATACGGATTGGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

489

Amino Acids

55.65

Weight (kDa)

5.52

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 42 1.3e-06 F-box domain
LRR_At1g61320_AtMIF1 PF23622 67 - 193 1e-08 At1g61320/AtMIF1, LRR domain
LRR_At5g56370 PF24758 88 - 306 9.6e-18 FBD-associated F-box protein At5g56370, LRR repeats
LRR_At1g61320_AtMIF1 PF23622 188 - 374 4e-10 At1g61320/AtMIF1, LRR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020325)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g09540
rosa_chinensis RchiOBHm_Chr7g0188641
rosa_laevigata RLG00000004673
rosa_rugosa Rorug06G0492100
rosa_samantha Rh7DG098900
rosa_wichuraiana Rw7G008370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 904
Acc36I ACCTGC 4 cut(s) 904, 974, 1309, 1381
AccII CGCG 3 cut(s) 996, 1120, 1362
AciI CCGC 3 cut(s) 870, 1120, 1360
AclWI GGATC 1 cut(s) 797
AcsI RAATTY 5 cut(s) 48, 821, 915, 1107, 1240
AcuI CTGAAG 1 cut(s) 1254
AfaI GTAC 4 cut(s) 329, 395, 633, 1267
AfiI CCNNNNNNNGG 3 cut(s) 679, 940, 972
AluBI AGCT 7 cut(s) 226, 529, 891, 1083, 1136, 1232, 1288
AluI AGCT 7 cut(s) 226, 529, 891, 1083, 1136, 1232, 1288
Alw21I GWGCWC 1 cut(s) 893
Alw26I GTCTC 1 cut(s) 1369
AlwI GGATC 1 cut(s) 797
AlwNI CAGNNNCTG 1 cut(s) 1373
Ama87I CYCGRG 2 cut(s) 489, 749
ApeKI GCWGC 2 cut(s) 77, 1304
ApoI RAATTY 5 cut(s) 48, 821, 915, 1107, 1240
Asp700I GAANNNNTTC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 998, 1120
AspS9I GGNCC 2 cut(s) 84, 1393
AsuC2I CCSGG 2 cut(s) 490, 491
AsuHPI GGTGA 2 cut(s) 885, 1263
AsuII TTCGAA 2 cut(s) 27, 472
AvaI CYCGRG 2 cut(s) 489, 749
AvaII GGWCC 2 cut(s) 84, 1393
BanII GRGCYC 1 cut(s) 893
BbsI GAAGAC 1 cut(s) 1422
Bbv12I GWGCWC 1 cut(s) 893
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 2 cut(s) 89, 1291
BccI CCATC 5 cut(s) 74, 245, 436, 608, 1405
BcnI CCSGG 2 cut(s) 490, 491
BcoDI GTCTC 1 cut(s) 1369
BfaI CTAG 6 cut(s) 647, 696, 729, 812, 1103, 1212
BfmI CTRYAG 2 cut(s) 340, 1374
BfuAI ACCTGC 4 cut(s) 904, 974, 1309, 1381
BglII AGATCT 1 cut(s) 649
BisI GCNGC 2 cut(s) 78, 1305
BlsI GCNGC 2 cut(s) 79, 1306
BmcAI AGTACT 1 cut(s) 1267
Bme1390I CCNGG 2 cut(s) 490, 491
Bme18I GGWCC 2 cut(s) 84, 1393
BmeT110I CYCGRG 2 cut(s) 489, 749
BmgT120I GGNCC 2 cut(s) 84, 1393
BmiI GGNNCC 2 cut(s) 272, 1395
BmrFI CCNGG 2 cut(s) 490, 491
BmsI GCATC 1 cut(s) 571
BpiI GAAGAC 1 cut(s) 1422
BpmI CTGGAG 2 cut(s) 127, 875
Bpu10I CCTNAGC 1 cut(s) 525
Bpu14I TTCGAA 2 cut(s) 27, 472
BpuEI CTTGAG 4 cut(s) 551, 656, 692, 1301
BpuMI CCSGG 2 cut(s) 490, 491
BsaAI YACGTR 1 cut(s) 557
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 3 cut(s) 679, 940, 972
Bse1I ACTGG 4 cut(s) 87, 110, 231, 1059
Bse3DI GCAATG 2 cut(s) 272, 701
BseDI CCNNGG 1 cut(s) 489
BseGI GGATG 2 cut(s) 335, 499
BseLI CCNNNNNNNGG 3 cut(s) 679, 940, 972
BseMI GCAATG 2 cut(s) 272, 701
BseMII CTCAG 5 cut(s) 159, 539, 875, 1128, 1380
BseNI ACTGG 4 cut(s) 87, 110, 231, 1059
BseRI GAGGAG 2 cut(s) 340, 901
BseXI GCAGC 2 cut(s) 89, 1291
Bsh1236I CGCG 3 cut(s) 996, 1120, 1362
BsiHKAI GWGCWC 1 cut(s) 893
BsiHKCI CYCGRG 2 cut(s) 489, 749
BsiSI CCGG 2 cut(s) 490, 788
BslI CCNNNNNNNGG 3 cut(s) 679, 940, 972
BsmAI GTCTC 1 cut(s) 1369
BsmBI CGTCTC 1 cut(s) 1369
BsmI GAATGC 1 cut(s) 1181
BsoBI CYCGRG 2 cut(s) 489, 749
Bsp119I TTCGAA 2 cut(s) 27, 472
Bsp1286I GDGCHC 1 cut(s) 893
Bsp1407I TGTACA 1 cut(s) 393
Bsp143I GATC 2 cut(s) 649, 802
BspACI CCGC 3 cut(s) 870, 1120, 1360
BspCNI CTCAG 5 cut(s) 160, 538, 876, 1129, 1379
BspFNI CGCG 3 cut(s) 996, 1120, 1362
BspLI GGNNCC 2 cut(s) 272, 1395
BspMAI CTGCAG 1 cut(s) 1378
BspMI ACCTGC 4 cut(s) 904, 974, 1309, 1381
BspPI GGATC 1 cut(s) 797
BspQI GCTCTTC 2 cut(s) 452, 1098
BspT104I TTCGAA 2 cut(s) 27, 472
BsrDI GCAATG 2 cut(s) 272, 701
BsrGI TGTACA 1 cut(s) 393
BsrI ACTGG 4 cut(s) 87, 110, 231, 1059
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 2 cut(s) 649, 802
Bst4CI ACNGT 3 cut(s) 124, 218, 521
Bst6I CTCTTC 4 cut(s) 452, 469, 1098, 1299
BstAUI TGTACA 1 cut(s) 393
BstBAI YACGTR 1 cut(s) 557
BstBI TTCGAA 2 cut(s) 27, 472
BstDEI CTNAG 6 cut(s) 168, 525, 763, 884, 1137, 1366
BstF5I GGATG 2 cut(s) 335, 499
BstFNI CGCG 3 cut(s) 996, 1120, 1362
BstHHI GCGC 2 cut(s) 998, 1120
BstKTI GATC 2 cut(s) 652, 805
BstMAI GTCTC 1 cut(s) 1369
BstMBI GATC 2 cut(s) 649, 802
BstMWI GCNNNNNNNGC 2 cut(s) 1285, 1310
BstSCI CCNGG 2 cut(s) 488, 489
BstSFI CTRYAG 2 cut(s) 340, 1374
BstUI CGCG 3 cut(s) 996, 1120, 1362
BstV1I GCAGC 2 cut(s) 89, 1291
BstV2I GAAGAC 1 cut(s) 1422
BstX2I RGATCY 1 cut(s) 649
BstYI RGATCY 1 cut(s) 649
BtsCI GGATG 2 cut(s) 335, 499
BtsIMutI CAGTG 3 cut(s) 94, 165, 517
BveI ACCTGC 4 cut(s) 904, 974, 1309, 1381
CaiI CAGNNNCTG 1 cut(s) 1373
CfoI GCGC 2 cut(s) 998, 1120
Cfr13I GGNCC 2 cut(s) 84, 1393
Cfr9I CCCGGG 1 cut(s) 489
CseI GACGC 1 cut(s) 1351
Csp6I GTAC 4 cut(s) 328, 394, 632, 1266
CspCI CAANNNNNGTGG 2 cut(s) 538, 573
CviAII CATG 4 cut(s) 132, 1038, 1186, 1412
CviQI GTAC 4 cut(s) 328, 394, 632, 1266
DdeI CTNAG 6 cut(s) 168, 525, 763, 884, 1137, 1366
DpnI GATC 2 cut(s) 651, 804
DpnII GATC 2 cut(s) 649, 802
DraI TTTAAA 1 cut(s) 1336
Eam1104I CTCTTC 4 cut(s) 452, 469, 1098, 1299
EarI CTCTTC 4 cut(s) 452, 469, 1098, 1299
Ecl136II GAGCTC 1 cut(s) 891
Eco24I GRGCYC 1 cut(s) 893
Eco47I GGWCC 2 cut(s) 84, 1393
Eco53kI GAGCTC 1 cut(s) 891
Eco57I CTGAAG 1 cut(s) 1254
Eco88I CYCGRG 2 cut(s) 489, 749
EcoICRI GAGCTC 1 cut(s) 891
EcoT38I GRGCYC 1 cut(s) 893
Esp3I CGTCTC 1 cut(s) 1369
FaeI CATG 4 cut(s) 135, 1041, 1189, 1415
FalI AAGNNNNNCTT 2 cut(s) 701, 733
FatI CATG 4 cut(s) 131, 1037, 1185, 1411
Fnu4HI GCNGC 2 cut(s) 78, 1305
FokI GGATG 2 cut(s) 322, 506
FriOI GRGCYC 1 cut(s) 893
Fsp4HI GCNGC 2 cut(s) 78, 1305
FspBI CTAG 6 cut(s) 647, 696, 729, 812, 1103, 1212
GlaI GCGC 2 cut(s) 997, 1119
GluI GCNGC 2 cut(s) 78, 1305
GsuI CTGGAG 2 cut(s) 127, 875
HapII CCGG 2 cut(s) 490, 788
HgaI GACGC 1 cut(s) 1351
HhaI GCGC 2 cut(s) 998, 1120
Hin1II CATG 4 cut(s) 135, 1041, 1189, 1415
Hin6I GCGC 2 cut(s) 996, 1118
HinP1I GCGC 2 cut(s) 996, 1118
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 8 cut(s) 345, 379, 692, 721, 991, 1291, 1415, 1439
HpaI GTTAAC 1 cut(s) 925
HpaII CCGG 2 cut(s) 490, 788
HphI GGTGA 2 cut(s) 885, 1263
Hpy166II GTNNAC 1 cut(s) 925
Hpy188I TCNGA 8 cut(s) 184, 885, 1167, 1250, 1369, 1420, 1438, 1444
Hpy188III TCNNGA 5 cut(s) 371, 602, 611, 718, 854
Hpy8I GTNNAC 1 cut(s) 925
HpyAV CCTTC 2 cut(s) 473, 890
HpyCH4III ACNGT 3 cut(s) 124, 218, 521
HpyCH4IV ACGT 1 cut(s) 556
HpyCH4V TGCA 6 cut(s) 549, 584, 969, 1181, 1189, 1376
HpyF10VI GCNNNNNNNGC 2 cut(s) 1285, 1310
HpyF3I CTNAG 6 cut(s) 168, 525, 763, 884, 1137, 1366
HpySE526I ACGT 1 cut(s) 556
Hsp92II CATG 4 cut(s) 135, 1041, 1189, 1415
HspAI GCGC 2 cut(s) 996, 1118
KspAI GTTAAC 1 cut(s) 925
Kzo9I GATC 2 cut(s) 649, 802
LguI GCTCTTC 2 cut(s) 452, 1098
LmnI GCTCC 3 cut(s) 276, 888, 1088
Lsp1109I GCAGC 2 cut(s) 89, 1291
LweI GCATC 1 cut(s) 571
MaeI CTAG 6 cut(s) 647, 696, 729, 812, 1103, 1212
MaeII ACGT 1 cut(s) 556
MaeIII GTNAC 5 cut(s) 795, 1000, 1024, 1207, 1223
MalI GATC 2 cut(s) 651, 804
MboI GATC 2 cut(s) 649, 802
MfeI CAATTG 2 cut(s) 397, 970
MflI RGATCY 1 cut(s) 649
MhlI GDGCHC 1 cut(s) 893
MlyI GAGTC 3 cut(s) 373, 1285, 1424
MnlI CCTC 8 cut(s) 67, 102, 361, 534, 732, 745, 850, 879
MroXI GAANNNNTTC 1 cut(s) 50
MseI TTAA 4 cut(s) 669, 924, 977, 1335
MspI CCGG 2 cut(s) 490, 788
MspR9I CCNGG 2 cut(s) 490, 491
MunI CAATTG 2 cut(s) 397, 970
Mva1269I GAATGC 1 cut(s) 1181
MvnI CGCG 3 cut(s) 996, 1120, 1362
MwoI GCNNNNNNNGC 2 cut(s) 1285, 1310
NciI CCSGG 2 cut(s) 490, 491
NdeII GATC 2 cut(s) 649, 802
NlaIII CATG 4 cut(s) 135, 1041, 1189, 1415
NlaIV GGNNCC 2 cut(s) 272, 1395
NmuCI GTSAC 1 cut(s) 1000
NspV TTCGAA 2 cut(s) 27, 472
PaeR7I CTCGAG 1 cut(s) 749
PaqCI CACCTGC 1 cut(s) 904
PciSI GCTCTTC 2 cut(s) 452, 1098
PctI GAATGC 1 cut(s) 1181
PdmI GAANNNNTTC 1 cut(s) 50
PfeI GAWTC 5 cut(s) 345, 692, 721, 991, 1439
PkrI GCNGC 2 cut(s) 79, 1306
PleI GAGTC 3 cut(s) 373, 1285, 1423
PpsI GAGTC 3 cut(s) 373, 1285, 1423
Ppu21I YACGTR 1 cut(s) 557
Psp124BI GAGCTC 1 cut(s) 893
PspN4I GGNNCC 2 cut(s) 272, 1395
PspPI GGNCC 2 cut(s) 84, 1393
PspXI VCTCGAGB 1 cut(s) 749
PstI CTGCAG 1 cut(s) 1378
PstNI CAGNNNCTG 1 cut(s) 1373
PsuI RGATCY 1 cut(s) 649
RsaI GTAC 4 cut(s) 329, 395, 633, 1267
RsaNI GTAC 4 cut(s) 328, 394, 632, 1266
SacI GAGCTC 1 cut(s) 893
SapI GCTCTTC 2 cut(s) 452, 1098
SaqAI TTAA 4 cut(s) 669, 924, 977, 1335
SatI GCNGC 2 cut(s) 78, 1305
Sau3AI GATC 2 cut(s) 649, 802
Sau96I GGNCC 2 cut(s) 84, 1393
ScaI AGTACT 1 cut(s) 1267
SchI GAGTC 3 cut(s) 373, 1285, 1424
ScrFI CCNGG 2 cut(s) 490, 491
SduI GDGCHC 1 cut(s) 893
SfaNI GCATC 1 cut(s) 571
SfcI CTRYAG 2 cut(s) 340, 1374
Sfr274I CTCGAG 1 cut(s) 749
SfuI TTCGAA 2 cut(s) 27, 472
SinI GGWCC 2 cut(s) 84, 1393
SlaI CTCGAG 1 cut(s) 749
SmaI CCCGGG 1 cut(s) 491
SmlI CTYRAG 5 cut(s) 530, 635, 707, 749, 1280
SmoI CTYRAG 5 cut(s) 530, 635, 707, 749, 1280
SsiI CCGC 3 cut(s) 870, 1120, 1360
SspI AATATT 1 cut(s) 1174
SspMI CTAG 6 cut(s) 647, 696, 729, 812, 1103, 1212
SstI GAGCTC 1 cut(s) 893
StyD4I CCNGG 2 cut(s) 488, 489
TaaI ACNGT 3 cut(s) 124, 218, 521
TaiI ACGT 1 cut(s) 559
TaqI TCGA 9 cut(s) 27, 98, 235, 370, 431, 472, 610, 665, 750
TaqII GACCGA 1 cut(s) 948
TatI WGTACW 3 cut(s) 393, 631, 1265
TfiI GAWTC 5 cut(s) 345, 692, 721, 991, 1439
Tru1I TTAA 4 cut(s) 669, 924, 977, 1335
Tru9I TTAA 4 cut(s) 669, 924, 977, 1335
TscAI CASTG 3 cut(s) 94, 172, 524
TseFI GTSAC 1 cut(s) 1000
TseI GCWGC 2 cut(s) 77, 1304
Tsp45I GTSAC 1 cut(s) 1000
TspDTI ATGAA 5 cut(s) 165, 1051, 1174, 1234, 1342
TspMI CCCGGG 1 cut(s) 489
TspRI CASTG 3 cut(s) 94, 172, 524
VpaK11BI GGWCC 2 cut(s) 84, 1393
XapI RAATTY 5 cut(s) 48, 821, 915, 1107, 1240
XhoI CTCGAG 1 cut(s) 749
XmaI CCCGGG 1 cut(s) 489
XmnI GAANNNNTTC 1 cut(s) 50
XspI CTAG 6 cut(s) 647, 696, 729, 812, 1103, 1212
ZrmI AGTACT 1 cut(s) 1267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.