Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012892

Physical Location & Seq

Genomic Coordinates Forward (+)

61000083 .. 61008486

Gene Structure 8404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0492100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGTGCGCTTCTTGCTTCAGATCAGGGCCAAACTCCAGAGCCTCACTAACCTTCAGCCCCAAGGAGGCTGCAAGGACCCCGACTTTACCTACCTCTTCAAGCTGAAATGTGAGGGCTGCGGAGAGCTAAGCGAGAAAGAAGCTGGTGTGAGATTGAACCTGGGAAAACGCAAGGGTGCCCCTGATCTTGTTCGGAAGCTGGGACTTGAGTGCAAGTTTTGTGAGAGGGAAGGGAGTGTGAGAATGATGCCAGAACATAATAGACCCCTGACCCAGACAGGGGTTTATTGCCCCTTGATGATGTTCGACTGCAAGGGTTATGAGCCTGTGGATTTCGTTTTCAGTGGTGGGTGGAAGGTTGAATCTGTGGCAGGGACAACTTTTGACAATGTTGACTTATCGAAGGGGAAGTTTGCTGAGTACGATGAGAGGGGAGAGCGTCCAGTTAAGATTTCCAATCTCCATGCTACTTTTACTGTTCTTAGGCCTGGATATACATGTAGGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

169

Amino Acids

19.15

Weight (kDa)

8.77

Isoelectric Point (pI)

35.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CXXC_Zn-b_euk	PF05907	6 - 158	1.7e-37	CXXC motif containing zinc binding protein, eukaryotic

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61880 AT5G61880 AT5G61880
fragaria_vesca	FvH4_5g09530
malus_domestica	MD06G1129700.v1.1 MD14G1147000.v1.1
prunus_persica	Prupe.5G141000_v2.0.a1 Prupe.5G141000_v2.0.a1
pyrus_communis	pycom06g12170 pycom14g12160
rosa_chinensis	RchiOBHm_Chr7g0188651
rosa_multiflora	Rmu_co8348777.1_g000001 Rmu_sc0001576.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266150
rosa_rugosa	Rorug06G0492100
rosa_samantha	Rh7AG096900 Rh7DG099000
rosa_wichuraiana	Rw7G008380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AciI	CCGC	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	1 cut(s)	422
AfiI	CCNNNNNNNGG	3 cut(s)	65, 279, 280
AflIII	ACRYGT	1 cut(s)	497
AgsI	TTSAA	3 cut(s)	100, 157, 362
AjnI	CCWGG	2 cut(s)	159, 487
AluBI	AGCT	4 cut(s)	103, 127, 143, 199
AluI	AGCT	4 cut(s)	103, 127, 143, 199
AoxI	GGCC	2 cut(s)	27, 485
ApeKI	GCWGC	2 cut(s)	69, 117
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	2 cut(s)	27, 76
AvaII	GGWCC	1 cut(s)	76
BaeGI	GKGCMC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	176
BbvI	GCAGC	2 cut(s)	56, 104
BciT130I	CCWGG	2 cut(s)	161, 489
BisI	GCNGC	2 cut(s)	70, 118
BlpI	GCTNAGC	1 cut(s)	128
BlsI	GCNGC	2 cut(s)	71, 119
Bme1390I	CCNGG	2 cut(s)	161, 489
Bme18I	GGWCC	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	27, 76
BmiI	GGNNCC	2 cut(s)	78, 178
BmrFI	CCNGG	2 cut(s)	161, 489
BmsI	GCATC	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	227
BsaJI	CCNNGG	2 cut(s)	61, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 279, 280
Bse1I	ACTGG	1 cut(s)	443
BseBI	CCWGG	2 cut(s)	161, 489
BseDI	CCNNGG	2 cut(s)	61, 160
BseLI	CCNNNNNNNGG	3 cut(s)	65, 279, 280
BseMII	CTCAG	1 cut(s)	408
BseNI	ACTGG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	2 cut(s)	56, 104
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	2 cut(s)	29, 487
BshNI	GGYRCC	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	216, 388
BslI	CCNNNNNNNGG	3 cut(s)	65, 279, 280
BsmFI	GGGAC	2 cut(s)	216, 388
BsnI	GGCC	2 cut(s)	29, 487
Bsp1286I	GDGCHC	1 cut(s)	181
Bsp143I	GATC	2 cut(s)	21, 184
Bsp1720I	GCTNAGC	1 cut(s)	128
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	2 cut(s)	29, 487
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	78, 178
BspT107I	GGYRCC	1 cut(s)	176
BsrI	ACTGG	1 cut(s)	443
BssECI	CCNNGG	2 cut(s)	61, 160
BssMI	GATC	2 cut(s)	21, 184
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	161, 489
Bst4CI	ACNGT	1 cut(s)	478
Bst6I	CTCTTC	1 cut(s)	101
BstDEI	CTNAG	3 cut(s)	128, 417, 482
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	2 cut(s)	24, 187
BstMBI	GATC	2 cut(s)	21, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	2 cut(s)	161, 489
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	2 cut(s)	159, 487
BstSLI	GKGCMC	1 cut(s)	181
BstV1I	GCAGC	2 cut(s)	56, 104
BsuRI	GGCC	2 cut(s)	29, 487
BtsIMutI	CAGTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	9
Cfr13I	GGNCC	2 cut(s)	27, 76
CseI	GACGC	1 cut(s)	428
Csp6I	GTAC	1 cut(s)	421
CviAII	CATG	2 cut(s)	464, 498
CviQI	GTAC	1 cut(s)	421
DdeI	CTNAG	3 cut(s)	128, 417, 482
DpnI	GATC	2 cut(s)	23, 186
DpnII	GATC	2 cut(s)	21, 184
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Eco130I	CCWWGG	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	487
Eco47I	GGWCC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	38
EcoO109I	RGGNCCY	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	159, 487
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	2 cut(s)	467, 501
FaiI	YATR	5 cut(s)	258, 321, 465, 495, 499
FaqI	GGGAC	2 cut(s)	216, 388
FatI	CATG	2 cut(s)	463, 497
Fnu4HI	GCNGC	2 cut(s)	70, 118
Fsp4HI	GCNGC	2 cut(s)	70, 118
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	2 cut(s)	70, 118
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	20
HaeIII	GGCC	2 cut(s)	29, 487
HgaI	GACGC	1 cut(s)	428
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	467, 501
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	1 cut(s)	362
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	2 cut(s)	21, 195
Hpy188III	TCNNGA	1 cut(s)	37
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	4 cut(s)	62, 224, 349, 397
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4V	TGCA	3 cut(s)	72, 213, 312
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	3 cut(s)	128, 417, 482
Hsp92II	CATG	2 cut(s)	467, 501
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	2 cut(s)	21, 184
Lsp1109I	GCAGC	2 cut(s)	56, 104
LweI	GCATC	1 cut(s)	237
MalI	GATC	2 cut(s)	23, 186
MboI	GATC	2 cut(s)	21, 184
MboII	GAAGA	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	53, 59, 104, 106, 219, 423
MseI	TTAA	1 cut(s)	447
MslI	CAYNNNNRTG	1 cut(s)	502
MspR9I	CCNGG	2 cut(s)	161, 489
MvaI	CCWGG	2 cut(s)	161, 489
MwoI	GCNNNNNNNGC	1 cut(s)	13
NdeII	GATC	2 cut(s)	21, 184
NlaIII	CATG	2 cut(s)	467, 501
NlaIV	GGNNCC	2 cut(s)	78, 178
NspI	RCATGY	1 cut(s)	501
PceI	AGGCCT	1 cut(s)	487
PciI	ACATGT	1 cut(s)	497
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	71, 119
PpuMI	RGGWCCY	1 cut(s)	76
PscI	ACATGT	1 cut(s)	497
Psp5II	RGGWCCY	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	159, 487
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	2 cut(s)	159, 487
PspN4I	GGNNCC	2 cut(s)	78, 178
PspPI	GGNCC	2 cut(s)	27, 76
PspPPI	RGGWCCY	1 cut(s)	76
RsaI	GTAC	1 cut(s)	422
RsaNI	GTAC	1 cut(s)	421
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	2 cut(s)	70, 118
Sau3AI	GATC	2 cut(s)	21, 184
Sau96I	GGNCC	2 cut(s)	27, 76
ScrFI	CCNGG	2 cut(s)	161, 489
SduI	GDGCHC	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	237
SinI	GGWCC	1 cut(s)	76
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	1 cut(s)	120
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	2 cut(s)	159, 487
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	478
TaqI	TCGA	2 cut(s)	306, 401
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	1 cut(s)	349
TseI	GCWGC	2 cut(s)	69, 117
TspRI	CASTG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	76
XceI	RCATGY	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.