Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012892

Physical Location & Seq

Genomic Coordinates Forward (+)

24850211 .. 24851803

Gene Structure 1593 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCTGCAAGAGTTTTGGCAAGTGTGATTGTGATGGGCTCTGGAATCATAGCCAGGGCTTGTACTCAGGCATATCGTCAGGCGCTTGCAAATGCATCAAAAACCGGGGTTGCGCATGAAGCGACACAGACTATTAAGAGAGGGTTGACTATAGGTGAAGCAGAAGCTAGACAGATTCTTGGTGTAACTGAGAAATCATCTTGGGACGAGATTCTTAAGAAATACGACACGTTGTTCGAACGCAATGCGCAGAATGGAAGCTTCTATCTCCAATCTAAGGTCCATAGAGCTAAGGAATGCTTAGAGACTGCATACCAGAAGAGTACAACAACAAGCGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

113

Amino Acids

12.31

Weight (kDa)

9.43

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 95	3e-17	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0012892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61880 AT5G61880 AT5G61880
fragaria_vesca	FvH4_5g09530
malus_domestica	MD06G1129700.v1.1 MD14G1147000.v1.1
prunus_persica	Prupe.5G141000_v2.0.a1 Prupe.5G141000_v2.0.a1
pyrus_communis	pycom06g12170 pycom14g12160
rosa_chinensis	RchiOBHm_Chr7g0188651
rosa_multiflora	Rmu_co8348777.1_g000001 Rmu_sc0001576.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266150
rosa_rugosa	Rorug06G0492100
rosa_samantha	Rh7AG096900 Rh7DG099000
rosa_wichuraiana	Rw7G008380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	114, 249
AfaI	GTAC	2 cut(s)	64, 325
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflII	CTTAAG	1 cut(s)	215
AflIII	ACRYGT	1 cut(s)	228
AjnI	CCWGG	1 cut(s)	53
AluBI	AGCT	3 cut(s)	167, 261, 290
AluI	AGCT	3 cut(s)	167, 261, 290
Alw26I	GTCTC	1 cut(s)	299
ApeKI	GCWGC	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	218, 250
AspLEI	GCGC	4 cut(s)	85, 115, 250, 338
AspS9I	GGNCC	1 cut(s)	280
AsuC2I	CCSGG	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	167
AsuII	TTCGAA	1 cut(s)	237
AvaII	GGWCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	41
BccI	CCATC	1 cut(s)	28
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	1 cut(s)	55
BcnI	CCSGG	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	150
BfoI	RGCGCY	1 cut(s)	86
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	2 cut(s)	55, 106
Bme18I	GGWCC	1 cut(s)	280
BmgT120I	GGNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	55, 106
BmsI	GCATC	1 cut(s)	104
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	54, 105
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse3DI	GCAATG	1 cut(s)	250
BseBI	CCWGG	1 cut(s)	55
BseDI	CCNNGG	2 cut(s)	54, 105
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	1 cut(s)	250
BseMII	CTCAG	2 cut(s)	80, 180
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	218
BsmI	GAATGC	1 cut(s)	302
Bsp119I	TTCGAA	1 cut(s)	237
Bsp1286I	GDGCHC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	79, 181
BspT104I	TTCGAA	1 cut(s)	237
BspTI	CTTAAG	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	54, 105
Bst2UI	CCWGG	1 cut(s)	55
Bst6I	CTCTTC	1 cut(s)	314
BstAFI	CTTAAG	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	87
BstDEI	CTNAG	5 cut(s)	66, 189, 276, 291, 301
BstH2I	RGCGCY	1 cut(s)	86
BstHHI	GCGC	4 cut(s)	85, 115, 250, 338
BstMAI	GTCTC	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	55
BstSCI	CCNGG	2 cut(s)	53, 104
BstSFI	CTRYAG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	87
CfoI	GCGC	4 cut(s)	85, 115, 250, 338
Cfr13I	GGNCC	1 cut(s)	280
Csp6I	GTAC	2 cut(s)	63, 324
CviAII	CATG	2 cut(s)	116, 339
CviJI	RGCY	7 cut(s)	5, 39, 53, 59, 167, 261, 290
CviKI_1	RGCY	7 cut(s)	5, 39, 53, 59, 167, 261, 290
CviQI	GTAC	2 cut(s)	63, 324
DdeI	CTNAG	5 cut(s)	66, 189, 276, 291, 301
Eam1104I	CTCTTC	1 cut(s)	314
EarI	CTCTTC	1 cut(s)	314
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	280
EcoRII	CCWGG	1 cut(s)	53
EcoT22I	ATGCAT	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	2 cut(s)	119, 342
FaiI	YATR	7 cut(s)	50, 73, 117, 152, 285, 313, 340
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	115, 338
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	168
FspI	TGCGCA	2 cut(s)	114, 249
GlaI	GCGC	4 cut(s)	84, 114, 249, 337
GluI	GCNGC	1 cut(s)	6
HaeII	RGCGCY	1 cut(s)	86
HapII	CCGG	1 cut(s)	105
HhaI	GCGC	4 cut(s)	85, 115, 250, 338
Hin1II	CATG	2 cut(s)	119, 342
Hin6I	GCGC	4 cut(s)	83, 113, 248, 336
HinP1I	GCGC	4 cut(s)	83, 113, 248, 336
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	3 cut(s)	45, 175, 211
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	1 cut(s)	147
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	4 cut(s)	8, 89, 95, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	5 cut(s)	66, 189, 276, 291, 301
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	119, 342
HspAI	GCGC	4 cut(s)	83, 113, 248, 336
LpnPI	CCDG	7 cut(s)	27, 40, 53, 65, 67, 118, 329
LweI	GCATC	1 cut(s)	104
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	41
MnlI	CCTC	1 cut(s)	134
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	2 cut(s)	135, 216
MspCI	CTTAAG	1 cut(s)	215
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	2 cut(s)	55, 106
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	55
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	106
NlaIII	CATG	2 cut(s)	119, 342
NsbI	TGCGCA	2 cut(s)	114, 249
NsiI	ATGCAT	1 cut(s)	97
NspV	TTCGAA	1 cut(s)	237
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	45, 175, 211
PkrI	GCNGC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	53
PspPI	GGNCC	1 cut(s)	280
RsaI	GTAC	2 cut(s)	64, 325
RsaNI	GTAC	2 cut(s)	63, 324
SaqAI	TTAA	2 cut(s)	135, 216
SatI	GCNGC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	280
ScrFI	CCNGG	2 cut(s)	55, 106
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	157, 169, 233, 263, 282, 292
SfaNI	GCATC	1 cut(s)	104
SfcI	CTRYAG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	237
SinI	GGWCC	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	215
SmoI	CTYRAG	1 cut(s)	215
SspMI	CTAG	1 cut(s)	168
StyD4I	CCNGG	2 cut(s)	53, 104
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	237
TatI	WGTACW	2 cut(s)	62, 323
TfiI	GAWTC	3 cut(s)	45, 175, 211
Tru1I	TTAA	2 cut(s)	135, 216
Tru9I	TTAA	2 cut(s)	135, 216
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	132
Vha464I	CTTAAG	1 cut(s)	215
VpaK11BI	GGWCC	1 cut(s)	280
XspI	CTAG	1 cut(s)	168
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.