Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012892

Physical Location & Seq

Genomic Coordinates Reverse (-)

59523070 .. 59525063

Gene Structure 1994 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00266150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGCAAAGATTCTTGCCAACTTGCTTGTGGTTGGCTCAGGAGTGTTGGCTAGGGCTTTTGTTCAAGCATACCGCCAGGCACTTACAAATGCCTCAAAGACTGGCGTTGCTCATGAAGCAGCACAGAGTATTCGGAGAGCAAGCAAAACTATGGCTGAAGGAGAAGCAAGGCAGGTATTAGGTGTCACTGAGCATGCATCATGGGAGGAGATTGTGCAGAGATATGACACCATGTTCGAGCGGAATGCGAAAAACGGAAGCTTTTATCTCCAGTCAAAGGTCCATAGAGCTAAAGAATGCTTAGAAGATGTTTACGGAAAGAAGGCTGAGGGGATTACTGATCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

116

Amino Acids

12.74

Weight (kDa)

9.13

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 105	6e-19	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61880 AT5G61880 AT5G61880
fragaria_vesca	FvH4_5g09530
malus_domestica	MD06G1129700.v1.1 MD14G1147000.v1.1
prunus_persica	Prupe.5G141000_v2.0.a1 Prupe.5G141000_v2.0.a1
pyrus_communis	pycom06g12170 pycom14g12160
rosa_chinensis	RchiOBHm_Chr7g0188651
rosa_multiflora	Rmu_co8348777.1_g000001 Rmu_sc0001576.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266150
rosa_rugosa	Rorug06G0492100
rosa_samantha	Rh7AG096900 Rh7DG099000
rosa_wichuraiana	Rw7G008380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	244
AciI	CCGC	2 cut(s)	76, 244
AclWI	GGATC	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	2 cut(s)	264, 293
AluI	AGCT	2 cut(s)	264, 293
AlwI	GGATC	1 cut(s)	338
ApeKI	GCWGC	2 cut(s)	5, 122
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	1 cut(s)	80
BfaI	CTAG	1 cut(s)	54
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	6, 123
BlsI	GCNGC	2 cut(s)	7, 124
Bme1390I	CCNGG	1 cut(s)	80
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	1 cut(s)	80
BmsI	GCATC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	2 cut(s)	40, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	109, 274
BseBI	CCWGG	1 cut(s)	80
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	54, 183, 321
BseNI	ACTGG	2 cut(s)	109, 274
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	134
BsgI	GTGCAG	1 cut(s)	239
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmI	GAATGC	2 cut(s)	253, 305
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	2 cut(s)	76, 244
BspCNI	CTCAG	3 cut(s)	53, 184, 322
BspHI	TCATGA	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	1 cut(s)	338
BsrBI	CCGCTC	1 cut(s)	244
BsrI	ACTGG	2 cut(s)	109, 274
BssMI	GATC	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	80
BstC8I	GCNNGC	2 cut(s)	145, 198
BstDEI	CTNAG	4 cut(s)	40, 192, 304, 330
BstKTI	GATC	1 cut(s)	346
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstNI	CCWGG	1 cut(s)	80
BstNSI	RCATGY	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	145, 198
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	4 cut(s)	116, 197, 204, 235
CviJI	RGCY	8 cut(s)	5, 39, 53, 59, 158, 264, 293, 329
CviKI_1	RGCY	8 cut(s)	5, 39, 53, 59, 158, 264, 293, 329
DdeI	CTNAG	4 cut(s)	40, 192, 304, 330
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	1 cut(s)	78
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	4 cut(s)	119, 200, 207, 238
FaiI	YATR	9 cut(s)	73, 117, 155, 198, 205, 228, 236, 288, 349
FatI	CATG	4 cut(s)	115, 196, 203, 234
Fnu4HI	GCNGC	2 cut(s)	6, 123
Fsp4HI	GCNGC	2 cut(s)	6, 123
FspBI	CTAG	1 cut(s)	54
GluI	GCNGC	2 cut(s)	6, 123
GsuI	CTGGAG	1 cut(s)	257
Hin1II	CATG	4 cut(s)	119, 200, 207, 238
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	1 cut(s)	13
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	2 cut(s)	42, 116
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	2 cut(s)	155, 319
HpyCH4V	TGCA	3 cut(s)	8, 200, 220
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	4 cut(s)	40, 192, 304, 330
Hsp92II	CATG	4 cut(s)	119, 200, 207, 238
Kzo9I	GATC	1 cut(s)	343
LpnPI	CCDG	6 cut(s)	27, 65, 90, 92, 161, 287
Lsp1109I	GCAGC	1 cut(s)	134
LweI	GCATC	1 cut(s)	209
MaeI	CTAG	1 cut(s)	54
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	345
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	1 cut(s)	343
MboII	GAAGA	1 cut(s)	320
MnlI	CCTC	3 cut(s)	106, 202, 325
Mph1103I	ATGCAT	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	80
Mva1269I	GAATGC	2 cut(s)	253, 305
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	119
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	4 cut(s)	119, 200, 207, 238
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PagI	TCATGA	1 cut(s)	115
PctI	GAATGC	2 cut(s)	253, 305
PfeI	GAWTC	1 cut(s)	13
PkrI	GCNGC	2 cut(s)	7, 124
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	283
SatI	GCNGC	2 cut(s)	6, 123
Sau3AI	GATC	1 cut(s)	343
Sau96I	GGNCC	1 cut(s)	283
ScrFI	CCNGG	1 cut(s)	80
SetI	ASST	5 cut(s)	180, 187, 266, 285, 295
SfaNI	GCATC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	283
SphI	GCATGC	1 cut(s)	200
SsiI	CCGC	2 cut(s)	76, 244
SspMI	CTAG	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	78
TaqI	TCGA	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	13
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	5, 122
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	132
TspGWI	ACGGA	2 cut(s)	273, 333
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	200
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
XspI	CTAG	1 cut(s)	54
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.