Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012892

Physical Location & Seq

Genomic Coordinates Reverse (-)

5526622 .. 5528883

Gene Structure 2262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g09530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTGCAAAGCTTCTTGCCAATTTGCTTGTGGTTGGCTCAGGGGTGTTGGCCAGGGCTTTTGTTCAAGCATACCGCCAGGCACTGACGAATGCCTCAAAGACTGGCGTTGCTCATGAAGCAACACAGAGTCTTAGGAGAGCAAGCAAAACTATGGCTGAAGGAGAGGCAAGGCAGGTATTAGGTGTCACAGAGCATGCATCATGGGAGGAGATTGTGCAGCGATATGACAACATGTTCGAGAGGAATGCCAAAAGCGGAAGCTTCTATCTCCAGTCAAAGGTCCATCGAGCTAAAGAATGCTTAGAAGGCGTTTACAGAAAGAAGGTTGAGGGTGGGGATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

116

Amino Acids

12.69

Weight (kDa)

9.56

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 107	3.6e-19	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61880 AT5G61880 AT5G61880
fragaria_vesca	FvH4_5g09530
malus_domestica	MD06G1129700.v1.1 MD14G1147000.v1.1
prunus_persica	Prupe.5G141000_v2.0.a1 Prupe.5G141000_v2.0.a1
pyrus_communis	pycom06g12170 pycom14g12160
rosa_chinensis	RchiOBHm_Chr7g0188651
rosa_multiflora	Rmu_co8348777.1_g000001 Rmu_sc0001576.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266150
rosa_rugosa	Rorug06G0492100
rosa_samantha	Rh7AG096900 Rh7DG099000
rosa_wichuraiana	Rw7G008380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AciI	CCGC	2 cut(s)	76, 258
AcoI	YGGCCR	1 cut(s)	51
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	1 cut(s)	280
AflIII	ACRYGT	1 cut(s)	234
AgsI	TTSAA	1 cut(s)	68
AjnI	CCWGG	2 cut(s)	53, 78
AluBI	AGCT	3 cut(s)	13, 264, 293
AluI	AGCT	3 cut(s)	13, 264, 293
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	51
ApeKI	GCWGC	2 cut(s)	5, 220
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	283
BalI	TGGCCA	1 cut(s)	53
BbvI	GCAGC	1 cut(s)	232
BccI	CCATC	1 cut(s)	294
BcgI	CGANNNNNNTGC	2 cut(s)	230, 264
BciT130I	CCWGG	2 cut(s)	55, 80
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	6, 221
BlsI	GCNGC	2 cut(s)	7, 222
Bme1390I	CCNGG	2 cut(s)	55, 80
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmrFI	CCNGG	2 cut(s)	55, 80
BmsI	GCATC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	257
Bpu10I	CCTNAGC	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	2 cut(s)	109, 274
BseBI	CCWGG	2 cut(s)	55, 80
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	2 cut(s)	109, 274
BseRI	GAGGAG	1 cut(s)	224
BseXI	GCAGC	1 cut(s)	232
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	53
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmI	GAATGC	3 cut(s)	97, 253, 305
BsnI	GGCC	1 cut(s)	53
BspACI	CCGC	2 cut(s)	76, 258
BspANI	GGCC	1 cut(s)	53
BspCNI	CTCAG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	115
BspMI	ACCTGC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	109, 274
BssECI	CCNNGG	1 cut(s)	54
Bst2UI	CCWGG	2 cut(s)	55, 80
BstC8I	GCNNGC	2 cut(s)	145, 198
BstDEI	CTNAG	3 cut(s)	40, 134, 304
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 309
BstNI	CCWGG	2 cut(s)	55, 80
BstNSI	RCATGY	2 cut(s)	200, 238
BstSCI	CCNGG	2 cut(s)	53, 78
BstV1I	GCAGC	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	145, 198
CaiI	CAGNNNCTG	1 cut(s)	85
CciI	TCATGA	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	4 cut(s)	116, 197, 204, 235
CviJI	RGCY	8 cut(s)	5, 13, 39, 53, 59, 158, 264, 293
CviKI_1	RGCY	8 cut(s)	5, 13, 39, 53, 59, 158, 264, 293
DdeI	CTNAG	3 cut(s)	40, 134, 304
EaeI	YGGCCR	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	53, 78
EcoT22I	ATGCAT	1 cut(s)	202
FaeI	CATG	4 cut(s)	119, 200, 207, 238
FaiI	YATR	9 cut(s)	73, 117, 155, 198, 205, 228, 236, 344, 346
FatI	CATG	4 cut(s)	115, 196, 203, 234
Fnu4HI	GCNGC	2 cut(s)	6, 221
Fsp4HI	GCNGC	2 cut(s)	6, 221
GluI	GCNGC	2 cut(s)	6, 221
GsuI	CTGGAG	1 cut(s)	257
HaeIII	GGCC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	119, 200, 207, 238
HindIII	AAGCTT	2 cut(s)	11, 262
HinfI	GANTC	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188III	TCNNGA	2 cut(s)	116, 241
Hpy8I	GTNNAC	1 cut(s)	316
HpyAV	CCTTC	3 cut(s)	155, 302, 319
HpyCH4V	TGCA	3 cut(s)	8, 200, 220
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 309
HpyF3I	CTNAG	3 cut(s)	40, 134, 304
Hsp92II	CATG	4 cut(s)	119, 200, 207, 238
LpnPI	CCDG	8 cut(s)	27, 40, 65, 67, 90, 92, 161, 287
Lsp1109I	GCAGC	1 cut(s)	232
LweI	GCATC	1 cut(s)	209
MaeIII	GTNAC	1 cut(s)	187
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	1 cut(s)	22
MluNI	TGGCCA	1 cut(s)	53
MlyI	GAGTC	1 cut(s)	139
MnlI	CCTC	5 cut(s)	106, 160, 202, 237, 325
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	202
MscI	TGGCCA	1 cut(s)	53
Msp20I	TGGCCA	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	55, 80
Mva1269I	GAATGC	3 cut(s)	97, 253, 305
MvaI	CCWGG	2 cut(s)	55, 80
MwoI	GCNNNNNNNGC	2 cut(s)	119, 309
NlaIII	CATG	4 cut(s)	119, 200, 207, 238
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	2 cut(s)	200, 238
PaeI	GCATGC	1 cut(s)	200
PagI	TCATGA	1 cut(s)	115
PciI	ACATGT	1 cut(s)	234
PctI	GAATGC	3 cut(s)	97, 253, 305
PkrI	GCNGC	2 cut(s)	7, 222
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PscI	ACATGT	1 cut(s)	234
Psp6I	CCWGG	2 cut(s)	53, 78
PspGI	CCWGG	2 cut(s)	53, 78
PspPI	GGNCC	1 cut(s)	283
PstNI	CAGNNNCTG	1 cut(s)	85
SatI	GCNGC	2 cut(s)	6, 221
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	2 cut(s)	55, 80
SetI	ASST	7 cut(s)	15, 180, 187, 266, 285, 295, 330
SfaNI	GCATC	1 cut(s)	209
SinI	GGWCC	1 cut(s)	283
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	76, 258
StyD4I	CCNGG	2 cut(s)	53, 78
TaqI	TCGA	2 cut(s)	240, 289
TasI	AATT	1 cut(s)	22
TscAI	CASTG	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	2 cut(s)	5, 220
Tsp45I	GTSAC	1 cut(s)	187
TspDTI	ATGAA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	2 cut(s)	200, 238
XcmI	CCANNNNNNNNNTGG	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.