Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0012892

Physical Location & Seq

Genomic Coordinates Forward (+)

17316154 .. 17317271

Gene Structure 1118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCTGCAAAAATTCTTGCCAACGTGCTTGTGATGGGCTCAGCAATAGTGGGCAGGGCTGTGCTCCGTGCATACCGTCAGGCAATCTCAAATGCCTCAAAGAACGGTGTTGCTAACGAAGCAGTAAACAATATTAGAAGAGCTAGCAAAATAATGGCTGAACCAGAGGCGAGGCAGGTTCTAGGTGTCACGGAGCATGCATCATGGGAGGAGATCTTGCAGAGGTATGACAACTTGTTTGAGCGGAATGCCAAAAACGGAAGCTTTTATCTTCAGTCAAAGGTCCATAGAGCTAAAGAAGTCTTAGAAGGTGCTTATGCAAAAAAGGCTCAGGGAACTCCGGATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0006605 GO:0006626 GO:0006810 GO:0006839 GO:0006886 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0017038 GO:0019866 GO:0030150 GO:0031090 GO:0031347 GO:0031348 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045184 GO:0046907 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0065007 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072655 GO:0080134 GO:0098796 GO:0098798 GO:0098800 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pam16

Protein Analysis

117

Amino Acids

12.71

Weight (kDa)

9.84

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pam16	PF03656	1 - 111	7.2e-20	Pam16

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0012892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61880 AT5G61880 AT5G61880
fragaria_vesca	FvH4_5g09530
malus_domestica	MD06G1129700.v1.1 MD14G1147000.v1.1
prunus_persica	Prupe.5G141000_v2.0.a1 Prupe.5G141000_v2.0.a1
pyrus_communis	pycom06g12170 pycom14g12160
rosa_chinensis	RchiOBHm_Chr7g0188651
rosa_multiflora	Rmu_co8348777.1_g000001 Rmu_sc0001576.1_g000024
rosa_roxburghii	Rroxscaffold_3G00266150
rosa_rugosa	Rorug06G0492100
rosa_samantha	Rh7AG096900 Rh7DG099000
rosa_wichuraiana	Rw7G008380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	244
AccIII	TCCGGA	1 cut(s)	340
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	257
AluBI	AGCT	3 cut(s)	143, 264, 293
AluI	AGCT	3 cut(s)	143, 264, 293
Alw21I	GWGCWC	1 cut(s)	66
Aor13HI	TCCGGA	1 cut(s)	340
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	12
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
AspS9I	GGNCC	1 cut(s)	283
AsuNHI	GCTAGC	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	283
BanII	GRGCYC	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	66
BccI	CCATC	1 cut(s)	28
BfaI	CTAG	2 cut(s)	144, 182
BfuAI	ACCTGC	1 cut(s)	166
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	1 cut(s)	6
BlpI	GCTNAGC	1 cut(s)	40
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmsI	GCATC	2 cut(s)	209, 334
BmtI	GCTAGC	1 cut(s)	147
Bpu10I	CCTNAGC	1 cut(s)	330
Bpu1102I	GCTNAGC	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	340
BseAI	TCCGGA	1 cut(s)	340
BseGI	GGATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	54, 344
BseRI	GAGGAG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	341
BsmI	GAATGC	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	41, 66
Bsp13I	TCCGGA	1 cut(s)	340
Bsp143I	GATC	1 cut(s)	213
Bsp1720I	GCTNAGC	1 cut(s)	40
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	2 cut(s)	53, 343
BspEI	TCCGGA	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	147
BspQI	GCTCTTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	244
BssMI	GATC	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	77, 107
Bst6I	CTCTTC	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	145, 198
BstDEI	CTNAG	3 cut(s)	40, 304, 330
BstF5I	GGATG	1 cut(s)	349
BstKTI	GATC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	213
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 326
BstNSI	RCATGY	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	145, 198
Cfr13I	GGNCC	1 cut(s)	283
CviAII	CATG	2 cut(s)	197, 204
CviJI	RGCY	8 cut(s)	5, 39, 59, 143, 158, 264, 293, 329
CviKI_1	RGCY	8 cut(s)	5, 39, 59, 143, 158, 264, 293, 329
DdeI	CTNAG	3 cut(s)	40, 304, 330
DpnI	GATC	1 cut(s)	215
DpnII	GATC	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	133
Eco24I	GRGCYC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	257
EcoT22I	ATGCAT	1 cut(s)	202
EcoT38I	GRGCYC	1 cut(s)	41
FaeI	CATG	2 cut(s)	200, 207
FaiI	YATR	6 cut(s)	73, 198, 205, 228, 288, 318
FatI	CATG	2 cut(s)	196, 203
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	1 cut(s)	41
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	144, 182
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	2 cut(s)	200, 207
HindIII	AAGCTT	1 cut(s)	262
HpaII	CCGG	1 cut(s)	341
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188III	TCNNGA	1 cut(s)	341
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	2 cut(s)	77, 107
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	5 cut(s)	8, 71, 200, 220, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 326
HpyF3I	CTNAG	3 cut(s)	40, 304, 330
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	200, 207
Kpn2I	TCCGGA	1 cut(s)	340
Kzo9I	GATC	1 cut(s)	213
LguI	GCTCTTC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	69, 193
LpnPI	CCDG	5 cut(s)	40, 65, 161, 177, 317
LweI	GCATC	2 cut(s)	209, 334
MaeI	CTAG	2 cut(s)	144, 182
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	187
MalI	GATC	1 cut(s)	215
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	1 cut(s)	213
MboII	GAAGA	2 cut(s)	150, 263
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	41, 66
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	5 cut(s)	106, 160, 165, 202, 216
Mph1103I	ATGCAT	1 cut(s)	202
MroI	TCCGGA	1 cut(s)	340
MspI	CCGG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	253
MwoI	GCNNNNNNNGC	2 cut(s)	119, 326
NdeII	GATC	1 cut(s)	213
NheI	GCTAGC	1 cut(s)	143
NlaIII	CATG	2 cut(s)	200, 207
NmuCI	GTSAC	1 cut(s)	187
NsiI	ATGCAT	1 cut(s)	202
NspI	RCATGY	1 cut(s)	200
PaeI	GCATGC	1 cut(s)	200
PciSI	GCTCTTC	1 cut(s)	133
PctI	GAATGC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	283
PsuI	RGATCY	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	133
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	1 cut(s)	213
Sau96I	GGNCC	1 cut(s)	283
SduI	GDGCHC	2 cut(s)	41, 66
SetI	ASST	9 cut(s)	27, 145, 180, 187, 227, 266, 285, 295, 313
SfaNI	GCATC	2 cut(s)	209, 334
SinI	GGWCC	1 cut(s)	283
SphI	GCATGC	1 cut(s)	200
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	244
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	2 cut(s)	144, 182
TaaI	ACNGT	2 cut(s)	77, 107
TaiI	ACGT	1 cut(s)	27
TasI	AATT	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	187
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	187
TspGWI	ACGGA	3 cut(s)	56, 206, 273
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	12
XceI	RCATGY	1 cut(s)	200
XspI	CTAG	2 cut(s)	144, 182
Zsp2I	ATGCAT	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.